CmoCh19G001740 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G001740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPoly(A)-specific ribonuclease
LocationCmo_Chr19: 1091961 .. 1092284 (+)
RNA-Seq ExpressionCmoCh19G001740
SyntenyCmoCh19G001740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTACCAACATAATGTGCATGCCTACGTCGTCTATCTTCGCCACCACTGATACACATCTATTAAGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCTGACTATCTTCTCAATGACAACTTAGGCTTAAAAAACTGTCGAAGCTGCTCCAAGTTAATGGCATTGGTACTGCCCACTTTGCTGGGTCTGATAGTTTGCTTACCGCTTCCGTTTATGCCAAGATAAAAGTAATTCTCAATGTTGAACGTAAGATATACGAAAGCTTTTTATATAGATTACGATAACCCATTCAAGATTAACGACGACCAATTATAA

mRNA sequence

ATGAAGTTTACCAACATAATGTGCATGCCTACGTCGTCTATCTTCGCCACCACTGATACACATCTATTAAGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCTGACTATCTTCTCAATGACAACTTAGGCTTAAAAAACTGTCGAAGCTGCTCCAAGTTAATGGCATTGGTACTGCCCACTTTGCTGGATTACGATAACCCATTCAAGATTAACGACGACCAATTATAA

Coding sequence (CDS)

ATGAAGTTTACCAACATAATGTGCATGCCTACGTCGTCTATCTTCGCCACCACTGATACACATCTATTAAGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCTGACTATCTTCTCAATGACAACTTAGGCTTAAAAAACTGTCGAAGCTGCTCCAAGTTAATGGCATTGGTACTGCCCACTTTGCTGGATTACGATAACCCATTCAAGATTAACGACGACCAATTATAA

Protein sequence

MKFTNIMCMPTSSIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLKNCRSCSKLMALVLPTLLDYDNPFKINDDQL
Homology
[Close]
BLAST of CmoCh19G001740 vs. ExPASy TrEMBL
Match: A0A6J1ILC5 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111475640 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 1   MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK 48
           MKFT+I+CMPTS SIFA    HLL TVTDLKHMARYSDYLLN NLGLK
Sbjct: 166 MKFTSIICMPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLK 213

[Close]
BLAST of CmoCh19G001740 vs. ExPASy TrEMBL
Match: A0A6J1IIN1 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 1   MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK 48
           MKFT+I+CMPTS SIFA    HLL TVTDLKHMARYSDYLLN NLGLK
Sbjct: 166 MKFTSIICMPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLK 213

[Close]
BLAST of CmoCh19G001740 vs. ExPASy TrEMBL
Match: A0A6J1HXB4 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467089 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1   MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK 48
           MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Sbjct: 166 MKFTNIICMPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLK 213

[Close]
BLAST of CmoCh19G001740 vs. ExPASy TrEMBL
Match: A0A6J1HSR3 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1   MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK 48
           MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Sbjct: 166 MKFTNIICMPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLK 213

[Close]
BLAST of CmoCh19G001740 vs. ExPASy TrEMBL
Match: A0A6J1HRD6 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 1   MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK 48
           MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Sbjct: 166 MKFTNIICMPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLK 213

The following BLAST results are available for this feature:
BLAST of CmoCh19G001740 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G001740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ILC52.4e-1081.25Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111475640 PE=3 S... [more]
A0A6J1IIN12.4e-1081.25Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 S... [more]
A0A6J1HXB44.2e-1081.25Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467089 PE=3 S... [more]
A0A6J1HSR34.2e-1081.25Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 S... [more]
A0A6J1HRD64.2e-1081.25Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 S... [more]
BLAST of CmoCh19G001740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G001740.1CmoCh19G001740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006402 mRNA catabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component GO:0030014 CCR4-NOT complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity