CmoCh19G001260 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G001260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L23
LocationCmo_Chr19: 731829 .. 734832 (-)
RNA-Seq ExpressionCmoCh19G001260
SyntenyCmoCh19G001260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTTGAAAATATTTGCCGGCGAGAAATTTGGCTTCCTTTTGATCCATGTACCAGCATGCTCCTTAAACGACGTCGTCTCGCGGCGTCTACATGTTTTTTATCGGATAAAAAAATATAAATTTATCCTTCCGTCAATTTCACTATTAAATTTATGAAACGGCGTCGTATTATCTGTGAAACGCTTGTTTTGGCTTGGCAATACGCGGGCAGGATAGTAAATAACTGCATCCAAACAGAGTGCCTAAAACCCTAACCCCAGAAAGTCTATGCCGTCGTCTTTCATAAATTAGGAAGTGCATTCGTTTTCTGGTCGGAGGAGAGAGAGAGAGACGGCAGCCGGAGAGTCCGTCAACAATGTCGAAGCGAGGTATGATCTGATTGTTCAGTTCATACGCTAATGTTTATGCAATATTTGATTCGATCTTCTTTTTGCTACTGTTTTTATACTCTTAGATTTGAGATTTGAGACTTGTTATTGTTGTGTATCGATTTAGGTAGGGGAGGTTCCGCAGGGAACAAATTTAGGATGTCGCTGGGTCTACCTGTGGCGGCTACAGTTAACTGTGCCGACAATACAGGAGCTAAGAACCTGTATATCATTTCGGTGAAGGGGATCAAGGGCCGCCTCAACCGATTGCCATCAGCTTGTGTTGGTGACATGGTCATGGCGACGGTCAAGAAGGGAAAACCTGACCTCAGGAAGAAGGTGCTTCCTGCTGTTATTGTCAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTCATGTACTTTGAAGGTCATACACAACTCAATTTATCTGTCTTGTTTCGCTTTCGATTAAATTTTTTGTTCTAACTTTTCTCCCCCGTGTTATCTGCTTCCTATTAGGTTACTTTGTCCATGGTTAATCGTCATAATTGACCTTGATCGGCTGGATTCTTGTTTTTTTTATGTATTATATGAATGTTTAACGTTTTTCATTAATGTTAGTGATGCGTTGTGTCCGTGGATATTTCAAATTTATGAGATTTTAATTCTTAATGCAACATGTGTCGTGGATAAGCATAGTTTTTTTAAATAATTAAAAAAAACAACTCGATAAACCAACCCAAAAATAAGGTTGGGTTGAGTTATAAACTCCGTTTAGATTGCTCTAGTCACCCTTAAATAGCATTTCATGTGAAGGGTTATTTCAAATGGTTTGTGAAGGTTGTTATCTATTCTAATTCTATGGGAGAATTATGTGCTTAGGATAGTTTTGTTGCCATTTTATGTGAAGGGTTGTTTCATGTAATGGAGACGAGGTAGCTGTCTTGTACTCGAAATATATCCATATAGAATTGAACGTTACAGTTGTTGAATAAGAGTTTTCTTGTTTTTGCAGATAACGCTGGTGTCATTGTGAACCCCAAAGGAGAGATGAAGGGTATGATCTTTTCCATTTCCGAACTTTAGAGTATCAAGTCCGTATGTGGTCTTAATAAAATGATAGTAACGTGCTAGAAGAAGTGTGAGATCTAACATCGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCAAACATGTTTTAACATCTTGAGGGGAAGTTTAGAAGGGAAAGGCCAAAGAAGACAATATCTGCTAGCGGTTGGTTTCGGCTGTTACAAATAGTATCAGAGCCCGTCATCGGGCGGTGTGCTAGCGGACACTGGTCCGTAATGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGTATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACTTGTTCTAAAACCTTGAGGGAAAGCCCAGAAGGGAAAGGTCAAAGAAGACAATATTTGCTAGCGGTGAATTTCGACTGTTACAAATAGTATCAGAGTCAGTCATCGAACGATGTGCTAGCGATGATGCTGGTCCCCAAGGGAAGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGAAGCATTCCTGATAAGGGTGTGTTAACCTCTCCCTAGCATACATGTTTTAAAACCTTGAGGGGAAACCCAAAAAAGACAATATTTGCTGTTTGAGCTGTTAAAAATAGTATCGGAGCCAGTCACTAGGCAGTGTGCCAGTGAGAACGTTGGTCCCCAAGGGTGGTGGATTGTGAGATCTCACGTCAATTGGACAGGGGCACGAAACATTCCTTATAAGGGTGTGAAAACCTCTCCCTCTCGAGGGGAAGCCCAGAAGGACAGCCCAAAGAGGACAATATTTACTAGTGGTGAGCTTGAGCTACTACCGTTTGGAGATCATTATGCTCCGAATTATAAATTTTCCATGGAAGTTTAATTTTGGAGTGATGATATTGTACCATCTTGATTGTTGTCGCTATACCTTGGAGTTGTTTTAGCATTTAAACTATCGTTCATTTTGCTTTCATGTACTTGGAACAGTTATTTTCTTGGGGTGTGCAGGTTCTGCTATAACAGGCCCAATTGGAAAGGAATGTGCTGATCTCTGGCCCAGAATTGCCAGTGCAGCTAATGCTATTGTTTGAACACCAAATCAAGTGACTTAGTTTCGTTTCTGTCCTTTTATAGACTAGGATTTTAAGATTCAATTTCATTGTCTGGGATTAACTTATTTTATCTTGATTTATATGATCGTTATGAGTTTTGGTTCATATCACATGTTTATCCCTATAGATGAAGTTAACTGCAAGGGAACCTTGTTATTTCTGGACTTCGCAGCTCGGGTTAGTATTGTGGATATGGATTCTCTCAGAAAGCTAACGAGGTACTCGAGTTTTAACTGAAATTTTCATACTTGTCAACTCGAGTATAACTAGAGAGAGAGAACCTATGAGAAGAGTTTATGTTGCACAGCTTGTTATCATACGCGTTTTTGAGTCGAGGTTTATTATCTCGTAAACACAAGGGGTTGTCGTTAGTGGGCAATAGAGCTTTTCTGTCGATGGTCGTTCTCCGTGAATAAGTTAGGGTTAGAAGTCTAAGTACCACATAAG

mRNA sequence

GGGTTGAAAATATTTGCCGGCGAGAAATTTGGCTTCCTTTTGATCCATGTACCAGCATGCTCCTTAAACGACGTCGTCTCGCGGCGTCTACATGTTTTTTATCGGATAAAAAAATATAAATTTATCCTTCCGTCAATTTCACTATTAAATTTATGAAACGGCGTCGTATTATCTGTGAAACGCTTGTTTTGGCTTGGCAATACGCGGGCAGGATAGTAAATAACTGCATCCAAACAGAGTGCCTAAAACCCTAACCCCAGAAAGTCTATGCCGTCGTCTTTCATAAATTAGGAAGTGCATTCGTTTTCTGGTCGGAGGAGAGAGAGAGAGACGGCAGCCGGAGAGTCCGTCAACAATGTCGAAGCGAGGTAGGGGAGGTTCCGCAGGGAACAAATTTAGGATGTCGCTGGGTCTACCTGTGGCGGCTACAGTTAACTGTGCCGACAATACAGGAGCTAAGAACCTGTATATCATTTCGGTGAAGGGGATCAAGGGCCGCCTCAACCGATTGCCATCAGCTTGTGTTGGTGACATGGTCATGGCGACGGTCAAGAAGGGAAAACCTGACCTCAGGAAGAAGGTGCTTCCTGCTGTTATTGTCAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTCATGTACTTTGAAGATAACGCTGGTGTCATTGTGAACCCCAAAGGAGAGATGAAGGGTTCTGCTATAACAGGCCCAATTGGAAAGGAATGTGCTGATCTCTGGCCCAGAATTGCCAGTGCAGCTAATGCTATTGTTTGAACACCAAATCAAGTGACTTAGTTTCGTTTCTGTCCTTTTATAGACTAGGATTTTAAGATTCAATTTCATTGTCTGGGATTAACTTATTTTATCTTGATTTATATGATCGTTATGAGTTTTGGTTCATATCACATGTTTATCCCTATAGATGAAGTTAACTGCAAGGGAACCTTGTTATTTCTGGACTTCGCAGCTCGGGTTAGTATTGTGGATATGGATTCTCTCAGAAAGCTAACGAGGTACTCGAGTTTTAACTGAAATTTTCATACTTGTCAACTCGAGTATAACTAGAGAGAGAGAACCTATGAGAAGAGTTTATGTTGCACAGCTTGTTATCATACGCGTTTTTGAGTCGAGGTTTATTATCTCGTAAACACAAGGGGTTGTCGTTAGTGGGCAATAGAGCTTTTCTGTCGATGGTCGTTCTCCGTGAATAAGTTAGGGTTAGAAGTCTAAGTACCACATAAG

Coding sequence (CDS)

ATGTCGAAGCGAGGTAGGGGAGGTTCCGCAGGGAACAAATTTAGGATGTCGCTGGGTCTACCTGTGGCGGCTACAGTTAACTGTGCCGACAATACAGGAGCTAAGAACCTGTATATCATTTCGGTGAAGGGGATCAAGGGCCGCCTCAACCGATTGCCATCAGCTTGTGTTGGTGACATGGTCATGGCGACGGTCAAGAAGGGAAAACCTGACCTCAGGAAGAAGGTGCTTCCTGCTGTTATTGTCAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTCATGTACTTTGAAGATAACGCTGGTGTCATTGTGAACCCCAAAGGAGAGATGAAGGGTTCTGCTATAACAGGCCCAATTGGAAAGGAATGTGCTGATCTCTGGCCCAGAATTGCCAGTGCAGCTAATGCTATTGTTTGA

Protein sequence

MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Homology
[Close]
BLAST of CmoCh19G001260 vs. ExPASy Swiss-Prot
Match: P49690 (60S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3)

HSP 1 Score: 281.2 bits (718), Expect = 6.5e-75
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. ExPASy Swiss-Prot
Match: Q07760 (60S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.2e-74
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. ExPASy Swiss-Prot
Match: Q9XEK8 (60S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-68
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 139

[Close]
BLAST of CmoCh19G001260 vs. ExPASy Swiss-Prot
Match: Q6PC14 (60S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-63
Identity = 119/139 (85.61%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 140
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]
BLAST of CmoCh19G001260 vs. ExPASy Swiss-Prot
Match: Q3T057 (60S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 4.4e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 140
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]
BLAST of CmoCh19G001260 vs. ExPASy TrEMBL
Match: A0A6J1HWG1 (60S ribosomal protein L23 OS=Cucurbita maxima OX=3661 GN=LOC111466895 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. ExPASy TrEMBL
Match: M5WP13 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G047000 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. ExPASy TrEMBL
Match: A0A6A5ND05 (Putative ribosomal protein L14P OS=Lupinus albus OX=3870 GN=Lal_00022109 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. ExPASy TrEMBL
Match: A0A5N5FNP6 (60S ribosomal protein L23-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_010165 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. ExPASy TrEMBL
Match: A0A7J6G5C7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_009005 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.2 bits (718), Expect = 4.6e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. TAIR 10
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.2 bits (718), Expect = 4.6e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. TAIR 10
Match: AT3G04400.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.2 bits (718), Expect = 4.6e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmoCh19G001260 vs. TAIR 10
Match: AT3G04400.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 255.0 bits (650), Expect = 3.5e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60

Query: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120

Query: 136 ANAIV 141
           ANAIV
Sbjct: 121 ANAIV 125

[Close]
BLAST of CmoCh19G001260 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-12
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 0 

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNR----RYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIV 67

Query: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 141
           R  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct: 68  RTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122

The following BLAST results are available for this feature:
BLAST of CmoCh19G001260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P496906.5e-7598.5760S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3[more]
Q077603.2e-7497.1460S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1[more]
Q9XEK83.4e-6890.7160S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1[more]
Q6PC142.0e-6385.6160S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1[more]
Q3T0574.4e-6384.8960S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2[more]
BLAST of CmoCh19G001260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HWG14.8e-73100.0060S ribosomal protein L23 OS=Cucurbita maxima OX=3661 GN=LOC111466895 PE=3 SV=1[more]
M5WP134.8e-73100.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G047000 PE=3 SV=1[more]
A0A6A5ND054.8e-73100.00Putative ribosomal protein L14P OS=Lupinus albus OX=3870 GN=Lal_00022109 PE=3 SV... [more]
A0A5N5FNP64.8e-73100.0060S ribosomal protein L23-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 ... [more]
A0A7J6G5C74.8e-73100.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_009005 PE=3 SV=1[more]
BLAST of CmoCh19G001260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G04480.14.6e-7698.57Ribosomal protein L14p/L23e family protein [more]
AT2G33370.14.6e-7698.57Ribosomal protein L14p/L23e family protein [more]
AT3G04400.14.6e-7698.57Ribosomal protein L14p/L23e family protein [more]
AT3G04400.23.5e-68100.00Ribosomal protein L14p/L23e family protein [more]
ATCG00780.16.1e-1233.61ribosomal protein L14 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 19..140
e-value: 3.2E-60
score: 216.1
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 22..140
e-value: 6.5E-36
score: 123.0
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 1..140
IPR000218Ribosomal protein L14PHAMAPMF_01367Ribosomal_L14coord: 19..140
score: 19.384665
IPR036853Ribosomal protein L14 superfamilyGENE3D2.40.150.20Ribosomal protein L14coord: 1..140
e-value: 5.9E-56
score: 190.0
IPR036853Ribosomal protein L14 superfamilySUPERFAMILY50193Ribosomal protein L14coord: 11..140
NoneNo IPR availablePANTHERPTHR11761:SF1960S RIBOSOMAL PROTEIN L23coord: 1..140
IPR019972Ribosomal protein L14P, conserved sitePROSITEPS00049RIBOSOMAL_L14coord: 79..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G001260.1CmoCh19G001260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070180 large ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome