CmoCh19G001110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G001110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DUF1681 domain-containing protein
Location	Cmo_Chr19: 651535 .. 654660 (+)
RNA-Seq Expression	CmoCh19G001110
Synteny	CmoCh19G001110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTGCACCTTCGTGTTTGATGCCTTCTTCTCACCTTAATTCCATTAAATTCAATTTTGTTTGGAAATCCATTCCCCCACTTCCATTTCTTTGAATCCTCAAGCTTTCTGTGAATCAATCGCCATGTCGTTTGAGGAGGACGAAGAGACCTTCGAGCACACTCTCCTTGTTGTTCGTGAGGTTTCCGTCTACAAAATCCCTCCTCGAACCACATCCGGCGGCTGCAAATGCGGCGAGTGGCTACAATCCGACAAGATCTGGTCCGGCCGCCTTCGTGTTGTGTCGTGTAAGGACCGATGTGAGATCCGGTTGGAAGATCCGAACTCCGGTGAGCTTTTTGCTGCTTGTTTTGTTAATCCGGGTCAGAGGGAGAACTCCGTTGAGGCCGTTCTTGACTCCTCGCGATACTTCGTTTTGAAGATCGAGGATGGCCAGGGTAAGCACGCTTTTGTAGGTTTAGGTTTCGCTGAACGAAATGAAGCTTTTGATTTTAATGTGGCACTGTCCGATCATGAGAAGTATGTCAGGAGGGATCATGAGAAGGACCCGACTGGTGGCGGCGATGTCAATGAAGAGAGCCACATTGATATCCATCCTGCTGTGAATCACAGATTGAAGGTATTCATTCCTCTGGTTTTATTTTCACCAAGCAATGAAGATGATTGTCTGCTGGGTTCTTGATTATGAACTGATCTTATTAATGAAATCTTCTGATCCAACCATTTGGAAAACAAATCATTCACATGGAAGGTTAGGAATCACGAACCTCCACAATGGTATGATATTGTCTACTTTGAGCATGGAAAGCCTATATGAATTCCTTAGTTATAACATCAACCCCTTAATTAGTCTAATTAGTCGACGTGGGAATCCTCTCCCAACAATTCTCCCCTCGAACAAAGTACACTATGGAGCCTCCCCTGAGGCCTATGGAGCCCTTGAACAACCTCCCCTTAATCGAAGCTCGACTCCCAACAATTCCCCCTCGAACAAAGTACGCTATACAGCCTCCCCTGAGGCCTATGAAGCCCTCGAACAGCCTCCTTAATCGAGGCTGACTTCTTCTCAAGAACCCTCAAACAAAGTACACCCTTTGTTCCACACTCGAGTTGCTTTTGACTACACCTTTAAGGCCACAACTTCTTTGTTCGACATCTGAGGATTCTATTGACATGGCTAAGTTAAGGGCATGACTCTGATACCATGTTAGGAATCACGAACCTCCACAATTGTATGATATTGTCCACCTTGAGCATTAGCTTTCATGACTTTGCTTTTGTTTTCCTGGGCCTTATACCAATGGAGATGTATTCCTTGTTTATAAACTCATAACATTTTATAGCTTGTAGCTTGCAAGTAATTACTATGAGTAGCTGTGAAATCATAACGTTTTATATTGACATTGTGATTGTGCTTCTTTACAATGGGCTGGATGATAGGAAGGTGAAACAATTCGGATCAATGTGAAGCATAAACCATCTAGTGGAACTGGTATGCTATCAGCTGCTGGCTTGTCAGGGTCTGGTACTGGAAAGCCAAAAACTCTGAGCCTTGCTCCACCACCAACTGGAGCTAGGAAAATCAGTTCTCCTCTTCCACCCCCTCCAAATGATCCAGCTGCGCGGAAATTATCTGCCAGCACGTGTCGGGATGTCGGTCGTGAAGGAAAAAGAGACAATGTAAGCACTGCGAGCAATCCTTTATCAGATCTTTCCCAACTTGAGGTATAGTGTCTACTGCTAGTTGCTCATTTCCTGACAGAGAAACATGTTTGATGAGGATAATGTCGTTCTTAAGTAATATGAATTGACTCTTTAACTTACATATTATGGTTCCTCTGTCCTTTATGCACAACCCATTTAAATCTAGATTAGTTTTATGAAACACGTTACTAAGTTTGATTCGACTCGAGTATTGGTTTCTCTCCTTTGTGATTGGAATTGACTGCTATCTTAGATTCTTATTGTGATATCTCACATTGGTTGGAGAGGGGAACGAAGCATTTACTATAAAGGTGTGGAAATCTCTCCTTTGTGATTGGAATTGACTGCTATCTTAGATTCTTATTGTGATATCTCACATTGGTTGGAGAGGGGAACGAAGCATTTACTATAAAGGTGTGGAAATCTCTAACTAGTAGGCGCATTTTAAAAACCTTGAGGGAAAACCCAAAAAGGACAATATTTGCTAGTGATGGGCTTGGACTGTTGCTAGTGATGGGCTTGGACTGTTGCTAGTGATGGGCAGTGTGCCAGCGAGGACGTTGGGTCCCCAAGGGGGTGAATTGTGCAATCTCACATCAGTTGGAGAGGGAACAAAGCATTCCTTATAAGGGTGCGGAAACCTCTCCCTAATAGACGCGTTTTAAAAACCTTGAGGGAAAGTCCAAAGAAGACAATATCTTCTAGTGGTGGGCTTGAGCTGTCACAAAATGTGGTAATAGAGCCAAGCACCGAGCGGTGTGCCAGCGACGATGCTAGGCCCCCAAGGGAGGTGGATTGTGAGATCCCACGTTGGTTGGGGAGGAGAACAAAGCATTTCTTACAAGAGTATGGAAACTTCTCCCAAAAAAACGTGTTTTAAAACCTTGAGGGGGAAGTTCGAAAGGAAAAGCTCAAAGAGGAAGTGTCTAGTGCGACGGAGTTTATTGAGTTTTTCAAATGCTTGAGCTATAGCCTTACGATTTCTTATTTCTTGAAGATAATCTGATATCGATCCACATTCTTTAGGTTCACTTAGAACATACATGAGTGCATGTATCCTTAGGAACTCATGTCAATGAACAAATCTAGAACAATTTTAACTCGTGATTCGTCGCATTTGCAGAGAAATCTTCCTTCGGCGCCGAGTTCGACAACAGCAGCAGCATCAGGATGGGCGGCATTCTGATCAAAGTAAGCTGGTGTTTGTTATTTAAAACAAAAAGTCTTAGTTTTATGTAATCTTCATTTTTTGTTCCTCTTGAGGGTGAAATGAGAGGGGAGGAGGAATGAGATGGAAGGGAAGCTATAAGTGATAATACCATATTGGAAAATAATCTTGGAATACTTATGTATACTTCTCCACTTATTTTCCCTATCTATCTTGAGTTGTCTCTTTAGCCCTTTTGCTTCTGTTCTTCATTGC

mRNA sequence

GTGTGCACCTTCGTGTTTGATGCCTTCTTCTCACCTTAATTCCATTAAATTCAATTTTGTTTGGAAATCCATTCCCCCACTTCCATTTCTTTGAATCCTCAAGCTTTCTGTGAATCAATCGCCATGTCGTTTGAGGAGGACGAAGAGACCTTCGAGCACACTCTCCTTGTTGTTCGTGAGGTTTCCGTCTACAAAATCCCTCCTCGAACCACATCCGGCGGCTGCAAATGCGGCGAGTGGCTACAATCCGACAAGATCTGGTCCGGCCGCCTTCGTGTTGTGTCGTGTAAGGACCGATGTGAGATCCGGTTGGAAGATCCGAACTCCGGTGAGCTTTTTGCTGCTTGTTTTGTTAATCCGGGTCAGAGGGAGAACTCCGTTGAGGCCGTTCTTGACTCCTCGCGATACTTCGTTTTGAAGATCGAGGATGGCCAGGGTAAGCACGCTTTTGTAGGTTTAGGTTTCGCTGAACGAAATGAAGCTTTTGATTTTAATGTGGCACTGTCCGATCATGAGAAGTATGTCAGGAGGGATCATGAGAAGGACCCGACTGGTGGCGGCGATGTCAATGAAGAGAGCCACATTGATATCCATCCTGCTGTGAATCACAGATTGAAGGAAGGTGAAACAATTCGGATCAATGTGAAGCATAAACCATCTAGTGGAACTGGTATGCTATCAGCTGCTGGCTTGTCAGGGTCTGGTACTGGAAAGCCAAAAACTCTGAGCCTTGCTCCACCACCAACTGGAGCTAGGAAAATCAGTTCTCCTCTTCCACCCCCTCCAAATGATCCAGCTGCGCGGAAATTATCTGCCAGCACGTGTCGGGATGTCGGTCGTGAAGGAAAAAGAGACAATGTAAGCACTGCGAGCAATCCTTTATCAGATCTTTCCCAACTTGAGAGAAATCTTCCTTCGGCGCCGAGTTCGACAACAGCAGCAGCATCAGGATGGGCGGCATTCTGATCAAAGTAAGCTGGTGTTTGTTATTTAAAACAAAAAGTCTTAGTTTTATGTAATCTTCATTTTTTGTTCCTCTTGAGGGTGAAATGAGAGGGGAGGAGGAATGAGATGGAAGGGAAGCTATAAGTGATAATACCATATTGGAAAATAATCTTGGAATACTTATGTATACTTCTCCACTTATTTTCCCTATCTATCTTGAGTTGTCTCTTTAGCCCTTTTGCTTCTGTTCTTCATTGC

Coding sequence (CDS)

ATGTCGTTTGAGGAGGACGAAGAGACCTTCGAGCACACTCTCCTTGTTGTTCGTGAGGTTTCCGTCTACAAAATCCCTCCTCGAACCACATCCGGCGGCTGCAAATGCGGCGAGTGGCTACAATCCGACAAGATCTGGTCCGGCCGCCTTCGTGTTGTGTCGTGTAAGGACCGATGTGAGATCCGGTTGGAAGATCCGAACTCCGGTGAGCTTTTTGCTGCTTGTTTTGTTAATCCGGGTCAGAGGGAGAACTCCGTTGAGGCCGTTCTTGACTCCTCGCGATACTTCGTTTTGAAGATCGAGGATGGCCAGGGTAAGCACGCTTTTGTAGGTTTAGGTTTCGCTGAACGAAATGAAGCTTTTGATTTTAATGTGGCACTGTCCGATCATGAGAAGTATGTCAGGAGGGATCATGAGAAGGACCCGACTGGTGGCGGCGATGTCAATGAAGAGAGCCACATTGATATCCATCCTGCTGTGAATCACAGATTGAAGGAAGGTGAAACAATTCGGATCAATGTGAAGCATAAACCATCTAGTGGAACTGGTATGCTATCAGCTGCTGGCTTGTCAGGGTCTGGTACTGGAAAGCCAAAAACTCTGAGCCTTGCTCCACCACCAACTGGAGCTAGGAAAATCAGTTCTCCTCTTCCACCCCCTCCAAATGATCCAGCTGCGCGGAAATTATCTGCCAGCACGTGTCGGGATGTCGGTCGTGAAGGAAAAAGAGACAATGTAAGCACTGCGAGCAATCCTTTATCAGATCTTTCCCAACTTGAGAGAAATCTTCCTTCGGCGCCGAGTTCGACAACAGCAGCAGCATCAGGATGGGCGGCATTCTGA

Protein sequence

MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSSGTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGREGKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF

Homology

[Close]

BLAST of CmoCh19G001110 vs. ExPASy Swiss-Prot
Match: Q681Q7 (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 PE=1 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.3e-106
Identity = 208/287 (72.47%), Postives = 234/287 (81.53%), Query Frame = 0


Query: 1   MSF--EEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDR 60
           MSF  EE+EETFEHTLLVVREVSVYKIPPRTTSGG KCGEWLQSDKIWSGRLRVVSCKDR
Sbjct: 1   MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR 60

Query: 61  CEIRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERN 120
           CEIRLED NSG+LFAACFV+PG+RENSVE  LDSSRYFVL+I+DG+GK+AF+GLGFAERN
Sbjct: 61  CEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERN 120

Query: 121 EAFDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKP 180
           EAFDFNVALSDHEKYVRR+ EK+   G     ++HIDIHPAVNHRLKEGETIRINVK KP
Sbjct: 121 EAFDFNVALSDHEKYVRREKEKET--GETSESDNHIDIHPAVNHRLKEGETIRINVKPKP 180

Query: 181 -SSGTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDV 240
            ++GTGMLSAA    SGTGKPK L+LAPPP  A    SPLPPPPNDP A ++++  C++ 
Sbjct: 181 TTNGTGMLSAA---LSGTGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASDGCKE- 240

Query: 241 GREGKRDNVSTASNPLSDLSQLERNLP----SAPSSTTAAASGWAAF 281
                    S  + PLSDLSQL++NLP    S  S +T AASGWAAF
Sbjct: 241 ---------SRRNEPLSDLSQLKKNLPSTAGSGSSKSTGAASGWAAF 272

[Close]

BLAST of CmoCh19G001110 vs. ExPASy Swiss-Prot
Match: Q9NVZ3 (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens OX=9606 GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-35
Identity = 93/226 (41.15%), Postives = 130/226 (57.52%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  +V VY+IPPR T+ G +  EW      WSGRLR+ +      I+LED
Sbjct: 2   EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61

Query: 66  PNSGELFAACFVN--PGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDF 125
             SGELFA   V+  PG    +VE+V DSSRYFV++IEDG G+ AF+G+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSSGTG 185
           NVAL DH K+V++  E          +  + D  P ++   KEG+TI++N+         
Sbjct: 122 NVALQDHFKWVKQQCE-------FAKQAQNPDQGPKLDLGFKEGQTIKLNI-------AN 181

Query: 186 MLSAAGLSGSGTGKPKT---LSLAPPPTGARKISSPLPPPPNDPAA 227
           M    G +G+   +P +   LSL PPP G +  +S L PPP +  A
Sbjct: 182 MKKKEGAAGNPRVRPASTGGLSLLPPPPGGK--TSTLIPPPGEQLA 208

[Close]

BLAST of CmoCh19G001110 vs. ExPASy Swiss-Prot
Match: Q5E9Q4 (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus OX=9913 GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-35
Identity = 88/211 (41.71%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  +V VY+IPPR T+ G +  EW      WSGRLR+ +      I+LED
Sbjct: 2   EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLED 61

Query: 66  PNSGELFAACFVN--PGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDF 125
             SGELFA   V+  PG    +VE+V DSSRYFV++IEDG G+ AF+G+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSSGTG 185
           NVAL DH K+V++  E          +  + D  P ++   KEG+TI++N+         
Sbjct: 122 NVALQDHFKWVKQQCE-------FAKQAQNPDQGPKLDLSFKEGQTIKLNI-------AS 181

Query: 186 MLSAAGLSGSGTGKPKT---LSLAPPPTGAR 212
           M    G +G+   +P +   LSL PPP GA+
Sbjct: 182 MKKKDGAAGTPRARPTSTGGLSLLPPPPGAK 195

[Close]

BLAST of CmoCh19G001110 vs. ExPASy Swiss-Prot
Match: Q6P756 (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Necap2 PE=1 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 7.7e-35
Identity = 103/280 (36.79%), Postives = 145/280 (51.79%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  EV VY+IPPR T+ G +  EW      WSGRLR+ +      I+LED
Sbjct: 2   EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query: 66  PNSGELFAACFVN--PGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDF 125
             SGELFA   V+  PG    +VE+V DSSRYFV++IEDG G+ AF+G+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSSGTG 185
           NVAL DH K+V++  E          +  + D  P ++   KEG+TI+IN+         
Sbjct: 122 NVALQDHFKWVKQQCE-------FAKQAQNPDEGPKLDLGFKEGQTIKINI-------AN 181

Query: 186 MLSAAGLSGSGTGKPKT---LSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 245
           M    G +G+   +P +   LSL PPP G  K+S+ +PP     +   L        G  
Sbjct: 182 MRKKEGAAGAPRTRPASAGGLSLLPPPPGG-KMSTLIPPSGEQFSGGSLVQPVSGSGGAT 241

Query: 246 GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF 281
                   A+   +D+         +PSS +   +GW  F
Sbjct: 242 ELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGWVQF 263

[Close]

BLAST of CmoCh19G001110 vs. ExPASy Swiss-Prot
Match: Q9D1J1 (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus OX=10090 GN=Necap2 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-34
Identity = 105/284 (36.97%), Postives = 147/284 (51.76%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  EV VY+IPPR T+ G +  EW      WSGRLR+ +      I+LED
Sbjct: 2   EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query: 66  PNSGELFAACFVN--PGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEAFDF 125
             SGELFA   V+  PG    +VE+V DSSRYFV++IEDG G+ AF+GLGF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSSGTG 185
           NVAL DH K+V++  E          +  + D  P ++   K+G+TI+IN+         
Sbjct: 122 NVALQDHFKWVKQQCE-------FAKQAQNPDEGPKLDLGFKDGQTIKINI-------AN 181

Query: 186 MLSAAGLSGSGTGKPKT---LSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 245
           M    G +G+   +P +   LSL PPP G +  SS + PP  +  +   S      V   
Sbjct: 182 MRKKEGAAGTPRARPTSAGGLSLLPPPPGGK--SSTVIPPSGEQLSVGGSLVQPAVVSGS 241

Query: 246 GKRDNVSTASNP----LSDLSQLERNLPSAPSSTTAAASGWAAF 281
           G    +   S P     +D+         +PSS +   +GW  F
Sbjct: 242 GGATELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGWVQF 266

[Close]

BLAST of CmoCh19G001110 vs. ExPASy TrEMBL
Match: A0A6J1HLP0 (uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464096 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 3.1e-156
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180
           FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180

Query: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 240
           GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE
Sbjct: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 240

Query: 241 GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF 281
           GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF
Sbjct: 241 GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF 280

[Close]

BLAST of CmoCh19G001110 vs. ExPASy TrEMBL
Match: A0A6J1HUU0 (uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467022 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.9e-153
Identity = 275/280 (98.21%), Postives = 277/280 (98.93%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRV SCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVASCKDRCE 60

Query: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180
           FDFNVALSDHEKYVRRDHEKDPTGGG+VNEESHIDIHPAVNHRLKEGETIRINVKHKPSS
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPTGGGNVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180

Query: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 240
           GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSAS CRDVGRE
Sbjct: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASACRDVGRE 240

Query: 241 GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF 281
           GKRDNVS AS+PLSDLSQLERNLPSAPSSTTAAASGWAAF
Sbjct: 241 GKRDNVSNASDPLSDLSQLERNLPSAPSSTTAAASGWAAF 280

[Close]

BLAST of CmoCh19G001110 vs. ExPASy TrEMBL
Match: A0A6J1HHH3 (uncharacterized protein At1g03900-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464096 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.5e-145
Identity = 265/280 (94.64%), Postives = 265/280 (94.64%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180
           FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180

Query: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 240
           GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE
Sbjct: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 240

Query: 241 GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF 281
           GKRDN               RNLPSAPSSTTAAASGWAAF
Sbjct: 241 GKRDN---------------RNLPSAPSSTTAAASGWAAF 265

[Close]

BLAST of CmoCh19G001110 vs. ExPASy TrEMBL
Match: A0A6J1HSI6 (uncharacterized protein At1g03900-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467022 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 1.0e-143
Identity = 262/280 (93.57%), Postives = 263/280 (93.93%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRV SCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVASCKDRCE 60

Query: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180
           FDFNVALSDHEKYVRRDHEKDPTGGG+VNEESHIDIHPAVNHRLKEGETIRINVKHKPSS
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPTGGGNVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180

Query: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 240
           GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSAS CRDVGRE
Sbjct: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASACRDVGRE 240

Query: 241 GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF 281
           GKRDN               RNLPSAPSSTTAAASGWAAF
Sbjct: 241 GKRDN---------------RNLPSAPSSTTAAASGWAAF 265

[Close]

BLAST of CmoCh19G001110 vs. ExPASy TrEMBL
Match: A0A6J1K5Y6 (uncharacterized protein At1g03900-like OS=Cucurbita maxima OX=3661 GN=LOC111491465 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.8e-142
Identity = 255/280 (91.07%), Postives = 263/280 (93.93%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGG KCGEWLQSDKIWSGRLRVVSCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACF+NPGQR+NSVE VLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKPSS 180
           FDFNVALSDHEKYVRRDHEKDP+ G D NEES IDIHPAVNHRLKEGETIRINVKHKPS 
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPSTGSDANEESQIDIHPAVNHRLKEGETIRINVKHKPSG 180

Query: 181 GTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDVGRE 240
           GTGMLSAAG+SG GTGKPK LSLAPPPTGA KI SPLPPPPNDPAARKLSAS CRDVG E
Sbjct: 181 GTGMLSAAGMSGFGTGKPKALSLAPPPTGAVKIRSPLPPPPNDPAARKLSASACRDVGHE 240

Query: 241 GKRDNVSTASNPLSDLSQLERNLPSAPSSTTAAASGWAAF 281
           GK+DNV  A++PLSDLSQLE+NLPSAP ST AAASGWAAF
Sbjct: 241 GKKDNVRHAADPLSDLSQLEKNLPSAPGSTKAAASGWAAF 280

[Close]

BLAST of CmoCh19G001110 vs. TAIR 10
Match: AT1G03900.1 (non-intrinsic ABC protein 4 )

HSP 1 Score: 387.5 bits (994), Expect = 9.1e-108
Identity = 208/287 (72.47%), Postives = 234/287 (81.53%), Query Frame = 0


Query: 1   MSF--EEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDR 60
           MSF  EE+EETFEHTLLVVREVSVYKIPPRTTSGG KCGEWLQSDKIWSGRLRVVSCKDR
Sbjct: 1   MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR 60

Query: 61  CEIRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERN 120
           CEIRLED NSG+LFAACFV+PG+RENSVE  LDSSRYFVL+I+DG+GK+AF+GLGFAERN
Sbjct: 61  CEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERN 120

Query: 121 EAFDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHKP 180
           EAFDFNVALSDHEKYVRR+ EK+   G     ++HIDIHPAVNHRLKEGETIRINVK KP
Sbjct: 121 EAFDFNVALSDHEKYVRREKEKET--GETSESDNHIDIHPAVNHRLKEGETIRINVKPKP 180

Query: 181 -SSGTGMLSAAGLSGSGTGKPKTLSLAPPPTGARKISSPLPPPPNDPAARKLSASTCRDV 240
            ++GTGMLSAA    SGTGKPK L+LAPPP  A    SPLPPPPNDP A ++++  C++ 
Sbjct: 181 TTNGTGMLSAA---LSGTGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASDGCKE- 240

Query: 241 GREGKRDNVSTASNPLSDLSQLERNLP----SAPSSTTAAASGWAAF 281
                    S  + PLSDLSQL++NLP    S  S +T AASGWAAF
Sbjct: 241 ---------SRRNEPLSDLSQLKKNLPSTAGSGSSKSTGAASGWAAF 272

[Close]

BLAST of CmoCh19G001110 vs. TAIR 10
Match: AT3G58600.1 (Adaptin ear-binding coat-associated protein 1 NECAP-1 )

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-33
Identity = 99/271 (36.53%), Postives = 141/271 (52.03%), Query Frame = 0


Query: 5   EDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCEIRLE 64
           E+ E  E  L  V E  VY IPPR T+   +  EW  +   W G L+VVS  + C I+L 
Sbjct: 27  EEREAIEIALFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLV 86

Query: 65  DPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIE---DGQGKHAFVGLGFAERNEAF 124
           D  +GEL+A  F+  G+  + VEAV+DSSRYFVL++E   DG+ +HAF+GLGF ER EA+
Sbjct: 87  DKTTGELYAQAFLREGEL-HPVEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAY 146

Query: 125 DFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLKEGETIRINVKHK---- 184
           DF  AL DH KY+ +    +         E H     +V++ LKEGETI + +K++    
Sbjct: 147 DFQAALHDHMKYLNKKKTAE-------EMEQHYQNTSSVDYSLKEGETIVLQLKNRSDKD 206

Query: 185 PSSGTGMLSAAGLSGSGTGKP-----KTLSLAPPPTG-------ARKISSPLPPPPN-DP 244
             S T   S   LS    GK       ++ L PPP G       A+K  S LPP  +   
Sbjct: 207 SKSKTVEKSLGNLSLEDKGKSIETTIPSIILPPPPPGPLSPVTTAQKSPSSLPPSLSLQR 266

Query: 245 AARKLSASTCRDVGREGKRDNVSTASNPLSD 256
           ++ +    T R+   E K++++      + D
Sbjct: 267 SSEQQDLDTKREEEEEEKKEDLKAKDGGVED 289

The following BLAST results are available for this feature:

BLAST of CmoCh19G001110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q681Q7	1.3e-106	72.47	Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 P...	[more]
Q9NVZ3	1.5e-35	41.15	Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens OX=9606 GN=NECAP2 ...	[more]
Q5E9Q4	2.6e-35	41.71	Adaptin ear-binding coat-associated protein 2 OS=Bos taurus OX=9913 GN=NECAP2 PE...	[more]
Q6P756	7.7e-35	36.79	Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus OX=10116 GN=N...	[more]
Q9D1J1	2.2e-34	36.97	Adaptin ear-binding coat-associated protein 2 OS=Mus musculus OX=10090 GN=Necap2...	[more]

BLAST of CmoCh19G001110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLP0	3.1e-156	100.00	uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HUU0	1.9e-153	98.21	uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1HHH3	2.5e-145	94.64	uncharacterized protein At1g03900-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HSI6	1.0e-143	93.57	uncharacterized protein At1g03900-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1K5Y6	9.8e-142	91.07	uncharacterized protein At1g03900-like OS=Cucurbita maxima OX=3661 GN=LOC1114914...	[more]

BLAST of CmoCh19G001110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03900.1	9.1e-108	72.47	non-intrinsic ABC protein 4	[more]
AT3G58600.1	3.3e-33	36.53	Adaptin ear-binding coat-associated protein 1 NECAP-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 14..137 e-value: 3.1E-48 score: 164.7
IPR012466	NECAP, PHear domain	PFAM	PF07933	DUF1681	coord: 11..175 e-value: 2.9E-54 score: 183.0
IPR012466	NECAP, PHear domain	CDD	cd13228	PHear_NECAP	coord: 12..132 e-value: 2.51552E-73 score: 218.579
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..225
None	No IPR available	PANTHER	PTHR12847	ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED	coord: 1..280
None	No IPR available	PANTHER	PTHR12847:SF13	SUBFAMILY NOT NAMED	coord: 1..280
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 7..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G001110.1	CmoCh19G001110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006897	endocytosis
cellular_component	GO:0030125	clathrin vesicle coat
cellular_component	GO:0016020	membrane