CmoCh19G000840 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGTGGGAAGATTATTGCGAACGATCAAGAACAAGAACAGGAACAAGAACGACGATGGAGTTTCGTCGTAAAAGACGAAACTTTTTCGTGCAATCAATTTCAATGGCCTGCAAAGAATTATTCTTGTAATTTTTGCAAGAGGGAATTCAAGTCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGGGCAAGAATGAGGCTTTTGCCTTCATGGATGGCTGATAATTCTTACCCTAACCCTAATTCTTGCTTCACTTTCAAATTGAATTCCAACAACTCTTTGTGTTCCAATACTCAAGAAGAGAAGAAAGCTTTTGGGAGTTGTTCATGGAACAATTACAAGCCCTCATTCAGCTCTCAAGATGATCATGATGATGTTCTTCATGTTTTGAAGAAGAAAAAGAAGAAAAATTTAGTGAATTTAGAGCTCAAAATGGGGAATTTGGAAGATGATTCTTCAAATGAAGATCTTGATTTGGAGCTTCATCTTTGA ATGGAGGGTGGGAAGATTATTGCGAACGATCAAGAACAAGAACAGGAACAAGAACGACGATGGAGTTTCGTCGTAAAAGACGAAACTTTTTCGTGCAATCAATTTCAATGGCCTGCAAAGAATTATTCTTGTAATTTTTGCAAGAGGGAATTCAAGTCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGGGCAAGAATGAGGCTTTTGCCTTCATGGATGGCTGATAATTCTTACCCTAACCCTAATTCTTGCTTCACTTTCAAATTGAATTCCAACAACTCTTTGTGTTCCAATACTCAAGAAGAGAAGAAAGCTTTTGGGAGTTGTTCATGGAACAATTACAAGCCCTCATTCAGCTCTCAAGATGATCATGATGATGTTCTTCATGTTTTGAAGAAGAAAAAGAAGAAAAATTTAGTGAATTTAGAGCTCAAAATGGGGAATTTGGAAGATGATTCTTCAAATGAAGATCTTGATTTGGAGCTTCATCTTTGA ATGGAGGGTGGGAAGATTATTGCGAACGATCAAGAACAAGAACAGGAACAAGAACGACGATGGAGTTTCGTCGTAAAAGACGAAACTTTTTCGTGCAATCAATTTCAATGGCCTGCAAAGAATTATTCTTGTAATTTTTGCAAGAGGGAATTCAAGTCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGGGCAAGAATGAGGCTTTTGCCTTCATGGATGGCTGATAATTCTTACCCTAACCCTAATTCTTGCTTCACTTTCAAATTGAATTCCAACAACTCTTTGTGTTCCAATACTCAAGAAGAGAAGAAAGCTTTTGGGAGTTGTTCATGGAACAATTACAAGCCCTCATTCAGCTCTCAAGATGATCATGATGATGTTCTTCATGTTTTGAAGAAGAAAAAGAAGAAAAATTTAGTGAATTTAGAGCTCAAAATGGGGAATTTGGAAGATGATTCTTCAAATGAAGATCTTGATTTGGAGCTTCATCTTTGA MEGGKIIANDQEQEQEQERRWSFVVKDETFSCNQFQWPAKNYSCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWMADNSYPNPNSCFTFKLNSNNSLCSNTQEEKKAFGSCSWNNYKPSFSSQDDHDDVLHVLKKKKKKNLVNLELKMGNLEDDSSNEDLDLELHL Homology
BLAST of CmoCh19G000840 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14 Identity = 57/179 (31.84%), Postives = 94/179 (52.51%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14 Identity = 59/171 (34.50%), Postives = 84/171 (49.12%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12 Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2) HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10 Identity = 56/169 (33.14%), Postives = 75/169 (44.38%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy Swiss-Prot
Match: Q9SR34 (Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.3e-07 Identity = 22/34 (64.71%), Postives = 30/34 (88.24%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy TrEMBL
Match: A0A6J1HH25 (zinc finger protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111463985 PE=4 SV=1) HSP 1 Score: 349.7 bits (896), Expect = 6.6e-93 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy TrEMBL
Match: A0A5D3B8Q5 (Transcriptional regulator SUPERMAN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00170 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 5.9e-49 Identity = 123/200 (61.50%), Postives = 144/200 (72.00%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy TrEMBL
Match: A0A1S3C0E4 (transcriptional regulator SUPERMAN-like OS=Cucumis melo OX=3656 GN=LOC103495035 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 5.9e-49 Identity = 123/200 (61.50%), Postives = 144/200 (72.00%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy TrEMBL
Match: A0A0A0L7I0 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G392775 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 8.5e-48 Identity = 118/188 (62.77%), Postives = 137/188 (72.87%), Query Frame = 0
BLAST of CmoCh19G000840 vs. ExPASy TrEMBL
Match: A0A6J1EYR4 (transcriptional regulator SUPERMAN-like OS=Cucurbita moschata OX=3662 GN=LOC111437438 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 3.6e-30 Identity = 89/178 (50.00%), Postives = 111/178 (62.36%), Query Frame = 0
BLAST of CmoCh19G000840 vs. TAIR 10
Match: AT2G42410.1 (zinc finger protein 11 ) HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15 Identity = 57/179 (31.84%), Postives = 94/179 (52.51%), Query Frame = 0
BLAST of CmoCh19G000840 vs. TAIR 10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 78.6 bits (192), Expect = 5.5e-15 Identity = 59/171 (34.50%), Postives = 84/171 (49.12%), Query Frame = 0
BLAST of CmoCh19G000840 vs. TAIR 10
Match: AT2G37740.1 (zinc-finger protein 10 ) HSP 1 Score: 74.7 bits (182), Expect = 7.9e-14 Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0
BLAST of CmoCh19G000840 vs. TAIR 10
Match: AT4G17810.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12 Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 0
BLAST of CmoCh19G000840 vs. TAIR 10
Match: AT5G06070.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 67.4 bits (163), Expect = 1.3e-11 Identity = 56/169 (33.14%), Postives = 75/169 (44.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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