CmoCh19G000550 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G000550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Auxin-responsive protein
Location	Cmo_Chr19: 310909 .. 312538 (+)
RNA-Seq Expression	CmoCh19G000550
Synteny	CmoCh19G000550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACTATTATCATTCCAACCAAGAACAGACATAGCCACCAAGCTCTCAAAGCGAAAGAAACGATGTCGTTTGAAGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATGTTAGATCAGAAGTGAGGAGGAAGAGAGGGTTCCATGAGGAGCCAGGTACAAATCACAAGCCTCCCCTACCCAAGTAAGTTCTACTTCGTCTTTTAGAGTTCGAGTAACGTTTTCTTAGGGTCGATAACGTAAATCACCACTGAATCGAAAAGCTTAAATGGATAGAAGTAAGTAGAAAACAGTCTTAAGTGGAGGTCAAAACGTACACGGATTGTATTTGAGTTGAGTTGGGTTGAGAGAATTTTTTGAACAAACTCGAAATTCCAGGTTGGTTAGGTTGATGACCCGAACAACCCGAATAGAGTTCATTACTCAACCTAACCCAACCCAATTTTTATCGTTTGAGTTAGTCCAAATTAGTCGAGTTATCAAGTCATAATAGCACCCCTAATTAGAGAAAGATAAATGGCATTATAGAGGTTCTAAGTACATACAAGACCTCTAACTCTGTCCCTTACCGAGATTACTTTAACACAACCCGAGTGTTTACTTAAGCTTATGGGTTGATCGAGAATGTCGAGTAATATTGTTGTTGCGAGCTTTGTAGGGCACAAGTGGTAGGTTGGCCACCAATAAGGTCGTACAGAAAGAACAGTCTAGCCCTCCGAAAGGGTAGCAACGAGGAGGTGGTGCTAATCAGTAGGAATAAGAATGGAAATATCGGAGCAGCTAGGTTCGTGAAGGTTAGCCTCGATGGTGCACCTTATCTTCGCAAAGTCGACTTGACCATGTACAACAGCTACAAACAACTCTCCCATGCCCTAGCCAAATTCTTCGGTGCCTTCACCATTGGTATTTAACGGGTTCTCGAACTTTTAATCAATAAATTCTCGAAACATTAGAATCTAGACGTGTAATTTAACGTAATTTAACATAATTTACAGAAATATAAAGAAATTTAATAATTTTTTTTTTTTCATTTTCCCCGACTCTAGGTCACTATGGATCCCAAGCAGTTGGGATGAAAGACTTCATGAATGAAAGCAAACTAATAGATCTTTTGAATGGTTCGGACTACGTTCCAACCTACCAAGACAAGGACGGTGATTGGATGCTCGTCGGTGATGTTCCATGGCAGTAAGTGATAATTATCTAGAATTTTTAAATATTTTATTTTAGTCTTCAATTTGTGAAAATCTACTATGATTCAAGGTTCGATTCGAAAATAACTGTATCAAATTTGTGCTAAATCCACCGTGAAAGATGCAAGAAATAACTCGAGTATAATACGTCTCGCAATATCCATGCAGGATGTTTGTTGAATCTTGCAAACGTCTACGTATAATGAAAGGAAAGGAAGCCATTAACCTCGGTAAGATTGATAGATTTGTGTGTTTTCAGTATCAGTGAATGTAGAGATTTGAATTTATCGAACATATTGTTTTAAACAAGTCCTAATCTATATCCTTAACATATCGGGACGTTTTTTTTTTTTCACCGAGGGCTGTAGAGAAATGCAAGAACTCCAAGAACTAACTTCACCTTTGATATGGGCAAGGCATGCTAATTGGTTGGTGTG

mRNA sequence

TTACTATTATCATTCCAACCAAGAACAGACATAGCCACCAAGCTCTCAAAGCGAAAGAAACGATGTCGTTTGAAGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATGTTAGATCAGAAGTGAGGAGGAAGAGAGGGTTCCATGAGGAGCCAGGTACAAATCACAAGCCTCCCCTACCCAAGGCACAAGTGGTAGGTTGGCCACCAATAAGGTCGTACAGAAAGAACAGTCTAGCCCTCCGAAAGGGTAGCAACGAGGAGGTGGTGCTAATCAGTAGGAATAAGAATGGAAATATCGGAGCAGCTAGGTTCGTGAAGGTTAGCCTCGATGGTGCACCTTATCTTCGCAAAGTCGACTTGACCATGTACAACAGCTACAAACAACTCTCCCATGCCCTAGCCAAATTCTTCGGTGCCTTCACCATTGGTCACTATGGATCCCAAGCAGTTGGGATGAAAGACTTCATGAATGAAAGCAAACTAATAGATCTTTTGAATGGTTCGGACTACGTTCCAACCTACCAAGACAAGGACGGTGATTGGATGCTCGTCGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAACGTCTACGTATAATGAAAGGAAAGGAAGCCATTAACCTCGGTAAGATTGATAGATTTGTGTGTTTTCAGTATCAGTGAATGTAGAGATTTGAATTTATCGAACATATTGTTTTAAACAAGTCCTAATCTATATCCTTAACATATCGGGACGTTTTTTTTTTTTCACCGAGGGCTGTAGAGAAATGCAAGAACTCCAAGAACTAACTTCACCTTTGATATGGGCAAGGCATGCTAATTGGTTGGTGTG

Coding sequence (CDS)

ATGTCGTTTGAAGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATGTTAGATCAGAAGTGAGGAGGAAGAGAGGGTTCCATGAGGAGCCAGGTACAAATCACAAGCCTCCCCTACCCAAGGCACAAGTGGTAGGTTGGCCACCAATAAGGTCGTACAGAAAGAACAGTCTAGCCCTCCGAAAGGGTAGCAACGAGGAGGTGGTGCTAATCAGTAGGAATAAGAATGGAAATATCGGAGCAGCTAGGTTCGTGAAGGTTAGCCTCGATGGTGCACCTTATCTTCGCAAAGTCGACTTGACCATGTACAACAGCTACAAACAACTCTCCCATGCCCTAGCCAAATTCTTCGGTGCCTTCACCATTGGTCACTATGGATCCCAAGCAGTTGGGATGAAAGACTTCATGAATGAAAGCAAACTAATAGATCTTTTGAATGGTTCGGACTACGTTCCAACCTACCAAGACAAGGACGGTGATTGGATGCTCGTCGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAACGTCTACGTATAATGAAAGGAAAGGAAGCCATTAACCTCGGTAAGATTGATAGATTTGTGTGTTTTCAGTATCAGTGA

Protein sequence

MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINLGKIDRFVCFQYQ

Homology

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BLAST of CmoCh19G000550 vs. ExPASy Swiss-Prot
Match: P13089 (Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 8.5e-60
Identity = 134/242 (55.37%), Postives = 149/242 (61.57%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEVR-RKRGFHE------------------------------ 60
           M FEETELRLGLPGN    EV  RKRGF E                              
Sbjct: 1   MGFEETELRLGLPGNGGTEEVLIRKRGFSETETGHEDESATTVDLMLNLSSKEAATTAAA 60

Query: 61  --EPGTNHK--------------PPLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISR 120
             +P   HK               P  K QVVGWPP+RS+RKN LA++K   EE     +
Sbjct: 61  AADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEE---SEK 120

Query: 121 NKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMK 180
           N + N   A FVKVS+DGAPYLRKVDL MY SY++LS +L K F +FT G+  SQ  GMK
Sbjct: 121 NSSPN---ASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQ--GMK 180

Query: 181 DFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINLGKI 196
           DFMNESKL DLLN SDYVPTY+DKDGDWMLVGDVPW+MFVESCKRLRIMKGKEAI LG  
Sbjct: 181 DFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLA 234

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BLAST of CmoCh19G000550 vs. ExPASy Swiss-Prot
Match: O24407 (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.0e-57
Identity = 122/226 (53.98%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEV----RRKRGFHEEPGTN---------------------- 60
           ++FE TELRLGLPG N   E+      KRGF E                           
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 61  -HKPPLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNGNIGA---------ARF 120
             KPP  KAQVVGWPP+RS+RKN ++ +K +  +    +   +G+ GA           +
Sbjct: 62  VVKPP-AKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAY 121

Query: 121 VKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDL 180
           VKVS+DGAPYLRK+DL +Y +Y+ LS+AL+K F +FTIG+YG Q  GMKDFMNESKLIDL
Sbjct: 122 VKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQ--GMKDFMNESKLIDL 181

Query: 181 LNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINL 191
           LNGSDYVPTY+DKDGDWMLVGDVPW+MFV+SCKR+RIMKG EAI L
Sbjct: 182 LNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGL 224

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BLAST of CmoCh19G000550 vs. ExPASy Swiss-Prot
Match: Q38832 (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=2)

HSP 1 Score: 222.2 bits (565), Expect = 5.2e-57
Identity = 124/223 (55.61%), Postives = 142/223 (63.68%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNN------VRSEVRRKRGF----------------HEEPGTNHKP- 60
           M+ +ETEL LGLPG         +S V  KRGF                H +  TN  P 
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query: 61  ----------PLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNGNIGAARFVKV 120
                     P  KAQVVGWPP+R+YRKN +A +K    E  + S       G   FVKV
Sbjct: 61  EKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGG-----GTVAFVKV 120

Query: 121 SLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNG 180
           S+DGAPYLRKVDL MY SYK LS ALAK F +FT+G YG+Q  GM DFMNESK++DLLN 
Sbjct: 121 SMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQ--GMIDFMNESKVMDLLNS 180

Query: 181 SDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINL 191
           S+YVP+Y+DKDGDWMLVGDVPW MFVESCKRLRIMKG EAI L
Sbjct: 181 SEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGL 216

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BLAST of CmoCh19G000550 vs. ExPASy Swiss-Prot
Match: P0C132 (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-53
Identity = 105/156 (67.31%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 36  KPPLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNG-NIGAARFVKVSLDGAPY 95
           KP  PKAQVVGWPP+RSYRKN LA++    ++      +K+G    AA FVKVS+DGAPY
Sbjct: 113 KPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPY 172

Query: 96  LRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTY 155
           LRKVDL MY SY +LS AL K F +FTIG+ GS  V   + MNESK+ DLLNGS+YVPTY
Sbjct: 173 LRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGV---NGMNESKIADLLNGSEYVPTY 232

Query: 156 QDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINL 191
           +DKDGDWMLVGDVPW+MFVESCKRLRIMKG EAI L
Sbjct: 233 EDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGL 265

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BLAST of CmoCh19G000550 vs. ExPASy Swiss-Prot
Match: Q38825 (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-53
Identity = 115/196 (58.67%), Postives = 138/196 (70.41%), Query Frame = 0


Query: 4   EETELRLGLPGNNVRS-EVRRKRGFHEEPGTNHKPPLP--KAQVVGWPPIRSYRKNSLAL 63
           E  +L L L  N   S +++      +E  T   P  P  KAQVVGWPP+R+YRKN +  
Sbjct: 40  ETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQ 99

Query: 64  RKGSN--EEVVLISRNKNGNIG----AARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALA 123
           +K S+  EE    S  K GN G     A  VKVS+DGAPYLRKVDL MY SY+ LS ALA
Sbjct: 100 QKTSSGAEEA---SSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALA 159

Query: 124 KFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVE 183
           K F +FT+G+YG+Q  GM DFMNESKL++LLN S+YVP+Y+DKDGDWMLVGDVPW+MFVE
Sbjct: 160 KMFSSFTMGNYGAQ--GMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVE 219

Query: 184 SCKRLRIMKGKEAINL 191
           SCKRLRIMKG EA+ L
Sbjct: 220 SCKRLRIMKGSEAVGL 230

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BLAST of CmoCh19G000550 vs. ExPASy TrEMBL
Match: A0A6J1HI00 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111463819 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.1e-106
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL 60
           MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL
Sbjct: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL 60

Query: 61  RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF 120
           RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF
Sbjct: 61  RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF 120

Query: 121 TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLR 180
           TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLR
Sbjct: 121 TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLR 180

Query: 181 IMKGKEAINLG 192
           IMKGKEAINLG
Sbjct: 181 IMKGKEAINLG 191

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BLAST of CmoCh19G000550 vs. ExPASy TrEMBL
Match: A0A6J1HGA8 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111463819 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.8e-106
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL 60
           MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL
Sbjct: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL 60

Query: 61  RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF 120
           RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF
Sbjct: 61  RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF 120

Query: 121 TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLR 180
           TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLR
Sbjct: 121 TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLR 180

Query: 181 IMKGKEAINLGK 193
           IMKGKEAINL K
Sbjct: 181 IMKGKEAINLEK 192

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BLAST of CmoCh19G000550 vs. ExPASy TrEMBL
Match: A0A6J1HFG3 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111463819 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.5e-94
Identity = 171/180 (95.00%), Postives = 174/180 (96.67%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL 60
           MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL
Sbjct: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLAL 60

Query: 61  RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF 120
           RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF
Sbjct: 61  RKGSNEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAF 120

Query: 121 TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLR 180
           TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPW    E C+ ++
Sbjct: 121 TIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWH--TEGCREMQ 178

[Close]

BLAST of CmoCh19G000550 vs. ExPASy TrEMBL
Match: A0A6J1HXB0 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111467083 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.1e-93
Identity = 179/205 (87.32%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEP---------GTNHKPPLPKAQVVGWPPIR 60
           MSFEETELRLGLPG N  SEV RKRGFHEE           TNHKPPLPKA VVGWPPIR
Sbjct: 1   MSFEETELRLGLPGKNGSSEVTRKRGFHEESAAETIISSHNTNHKPPLPKALVVGWPPIR 60

Query: 61  SYRKNSLALRKGS----NEEVVLISRNKNGNIGAARFVKVSLDGAPYLRKVDLTMYNSYK 120
           SYRKNSLALRKGS    NEEVVLISRNKNGNIGAAR VKVSLDGAPYLRKVDLTMYNSYK
Sbjct: 61  SYRKNSLALRKGSNEEENEEVVLISRNKNGNIGAARLVKVSLDGAPYLRKVDLTMYNSYK 120

Query: 121 QLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDV 180
           QLSHALAKFFGAFTIGH GSQAVGMKDFMNESKLIDLLN SDY+PTYQDKDGDWMLVGDV
Sbjct: 121 QLSHALAKFFGAFTIGHCGSQAVGMKDFMNESKLIDLLNDSDYIPTYQDKDGDWMLVGDV 180

Query: 181 PWQMFVESCKRLRIMKGKEAINLGK 193
           PWQMFVESCKRLRIMKGKEAI+L K
Sbjct: 181 PWQMFVESCKRLRIMKGKEAIDLKK 205

[Close]

BLAST of CmoCh19G000550 vs. ExPASy TrEMBL
Match: A0A6J1K6V6 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111491207 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.0e-71
Identity = 150/222 (67.57%), Postives = 162/222 (72.97%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEVRRKRGFHEEPG------------------TNHKPPLPKA 60
           MSFEETELRLGLPGN    E+ RKRGF E                      N KPP PK 
Sbjct: 1   MSFEETELRLGLPGNG--REMARKRGFPETAAETMVTMADLKLEASYGLDPNPKPPPPKE 60

Query: 61  QVVGWPPIRSYRKNSLALRKGSNEEVVLIS-RNKN-GNIGAARFVKVSLDGAPYLRKVDL 120
           QVVGWPPIRSYRKN L+L+KG+  E  +IS   KN GN  A RFVKVSLDGAPYLRKVD 
Sbjct: 61  QVVGWPPIRSYRKNRLSLQKGTTSEDEIISDEQKNIGNAAAVRFVKVSLDGAPYLRKVDF 120

Query: 121 TMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGD 180
           + Y+SYKQLS ALAK FG FTIG+ GSQA GMKDFMNESKLID+LNGSDYVPTYQD+DGD
Sbjct: 121 STYSSYKQLSDALAKLFGPFTIGNCGSQAGGMKDFMNESKLIDVLNGSDYVPTYQDRDGD 180

Query: 181 WMLVGDVPWQMFVESCKRLRIMKGKEAINLGKIDRFVCFQYQ 203
           WMLVGDVPWQMFV SCKRLRIMKGKEA+ L   D   C  Y+
Sbjct: 181 WMLVGDVPWQMFVGSCKRLRIMKGKEAVGLAPRDVEKCKNYK 220

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BLAST of CmoCh19G000550 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-58
Identity = 122/226 (53.98%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEV----RRKRGFHEEPGTN---------------------- 60
           ++FE TELRLGLPG N   E+      KRGF E                           
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 61  -HKPPLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNGNIGA---------ARF 120
             KPP  KAQVVGWPP+RS+RKN ++ +K +  +    +   +G+ GA           +
Sbjct: 62  VVKPP-AKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAY 121

Query: 121 VKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDL 180
           VKVS+DGAPYLRK+DL +Y +Y+ LS+AL+K F +FTIG+YG Q  GMKDFMNESKLIDL
Sbjct: 122 VKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQ--GMKDFMNESKLIDL 181

Query: 181 LNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINL 191
           LNGSDYVPTY+DKDGDWMLVGDVPW+MFV+SCKR+RIMKG EAI L
Sbjct: 182 LNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGL 224

[Close]

BLAST of CmoCh19G000550 vs. TAIR 10
Match: AT4G14550.1 (indole-3-acetic acid inducible 14 )

HSP 1 Score: 222.2 bits (565), Expect = 3.7e-58
Identity = 124/223 (55.61%), Postives = 142/223 (63.68%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNN------VRSEVRRKRGF----------------HEEPGTNHKP- 60
           M+ +ETEL LGLPG         +S V  KRGF                H +  TN  P 
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query: 61  ----------PLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNGNIGAARFVKV 120
                     P  KAQVVGWPP+R+YRKN +A +K    E  + S       G   FVKV
Sbjct: 61  EKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGG-----GTVAFVKV 120

Query: 121 SLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNG 180
           S+DGAPYLRKVDL MY SYK LS ALAK F +FT+G YG+Q  GM DFMNESK++DLLN 
Sbjct: 121 SMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQ--GMIDFMNESKVMDLLNS 180

Query: 181 SDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINL 191
           S+YVP+Y+DKDGDWMLVGDVPW MFVESCKRLRIMKG EAI L
Sbjct: 181 SEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGL 216

[Close]

BLAST of CmoCh19G000550 vs. TAIR 10
Match: AT3G23050.1 (indole-3-acetic acid 7 )

HSP 1 Score: 209.5 bits (532), Expect = 2.5e-54
Identity = 115/196 (58.67%), Postives = 138/196 (70.41%), Query Frame = 0


Query: 4   EETELRLGLPGNNVRS-EVRRKRGFHEEPGTNHKPPLP--KAQVVGWPPIRSYRKNSLAL 63
           E  +L L L  N   S +++      +E  T   P  P  KAQVVGWPP+R+YRKN +  
Sbjct: 40  ETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQ 99

Query: 64  RKGSN--EEVVLISRNKNGNIG----AARFVKVSLDGAPYLRKVDLTMYNSYKQLSHALA 123
           +K S+  EE    S  K GN G     A  VKVS+DGAPYLRKVDL MY SY+ LS ALA
Sbjct: 100 QKTSSGAEEA---SSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALA 159

Query: 124 KFFGAFTIGHYGSQAVGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWQMFVE 183
           K F +FT+G+YG+Q  GM DFMNESKL++LLN S+YVP+Y+DKDGDWMLVGDVPW+MFVE
Sbjct: 160 KMFSSFTMGNYGAQ--GMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVE 219

Query: 184 SCKRLRIMKGKEAINL 191
           SCKRLRIMKG EA+ L
Sbjct: 220 SCKRLRIMKGSEAVGL 230

[Close]

BLAST of CmoCh19G000550 vs. TAIR 10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 201.4 bits (511), Expect = 6.7e-52
Identity = 113/224 (50.45%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 1   MSFEETELRLGLPGNNVRSEVR-RKRGFHE---------------EPGTNH--------- 60
           ++  ETEL LGLPG +  + V   KRGF E               E  T H         
Sbjct: 7   LNLRETELCLGLPGGDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSKE 66

Query: 61  ---------KPPLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNGNIGAARFVK 120
                    KPP  KAQVVGWPP+RSYRKN           V++  +  +G   AA FVK
Sbjct: 67  KSACPKDPAKPP-AKAQVVGWPPVRSYRKN-----------VMVSCQKSSGGPEAAAFVK 126

Query: 121 VSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLIDLLN 180
           VS+DGAPYLRK+DL MY SY +LS+AL+  F +FT+G +G +  GM DFMNE KL+DL+N
Sbjct: 127 VSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEE-GMIDFMNERKLMDLVN 186

Query: 181 GSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINL 191
             DYVP+Y+DKDGDWMLVGDVPW MFV++CKRLR+MKG +AI L
Sbjct: 187 SWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGL 217

[Close]

BLAST of CmoCh19G000550 vs. TAIR 10
Match: AT5G65670.1 (indole-3-acetic acid inducible 9 )

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-49
Identity = 95/172 (55.23%), Postives = 119/172 (69.19%), Query Frame = 0


Query: 25  RGFHEEPGTNHKPPLPKAQVVGWPPIRSYRKNSLALRKGSNEEVVLISRNKNGNIGA-AR 84
           +G       +  PP  KAQ+VGWPP+RSYRKN+LA    +++EV       +G  G+ A 
Sbjct: 165 KGQSSTTNNSSSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDEV-------DGRPGSGAL 224

Query: 85  FVKVSLDGAPYLRKVDLTMYNSYKQLSHALAKFFGAFTIGHYGSQAVGMKDFMNESKLID 144
           FVKVS+DGAPYLRKVDL  Y +Y +LS AL K F  FT+G  GS     KD ++E+KL D
Sbjct: 225 FVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKD 284

Query: 145 LLNGSDYVPTYQDKDGDWMLVGDVPWQMFVESCKRLRIMKGKEAINLGKIDR 196
           LLNG DYV TY+DKDGDWMLVGDVPW+MF++ CK+L+IMKG +AI L    R
Sbjct: 285 LLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPR 329

The following BLAST results are available for this feature:

BLAST of CmoCh19G000550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P13089	8.5e-60	55.37	Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1	[more]
O24407	3.0e-57	53.98	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=...	[more]
Q38832	5.2e-57	55.61	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=...	[more]
P0C132	3.5e-53	67.31	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30...	[more]
Q38825	3.5e-53	58.67	Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1	[more]

BLAST of CmoCh19G000550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI00	2.1e-106	100.00	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111463819 PE=3 SV=1	[more]
A0A6J1HGA8	4.8e-106	99.48	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111463819 PE=3 SV=1	[more]
A0A6J1HFG3	5.5e-94	95.00	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111463819 PE=3 SV=1	[more]
A0A6J1HXB0	2.1e-93	87.32	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111467083 PE=3 SV=1	[more]
A0A6J1K6V6	1.0e-71	67.57	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111491207 PE=3 SV=1	[more]

BLAST of CmoCh19G000550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04730.1	2.1e-58	53.98	indoleacetic acid-induced protein 16	[more]
AT4G14550.1	3.7e-58	55.61	indole-3-acetic acid inducible 14	[more]
AT3G23050.1	2.5e-54	58.67	indole-3-acetic acid 7	[more]
AT1G04250.1	6.7e-52	50.45	AUX/IAA transcriptional regulator family protein	[more]
AT5G65670.1	5.3e-49	55.23	indole-3-acetic acid inducible 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 78..195 e-value: 1.0E-40 score: 139.9
None	No IPR available	PANTHER	PTHR31734:SF113	AUXIN-INDUCED PROTEIN AUX28	coord: 35..195
None	No IPR available	PANTHER	PTHR31734:SF113	AUXIN-INDUCED PROTEIN AUX28	coord: 1..29
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 74..183
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 32..191 e-value: 1.1E-72 score: 244.8
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..29
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 35..195
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 82..184 score: 23.427456

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G000550.1	CmoCh19G000550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding