CmoCh19G000180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G000180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr19: 118443 .. 118889 (+)
RNA-Seq ExpressionCmoCh19G000180
SyntenyCmoCh19G000180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCCTCACAACCTCAGAATCCCGACGAGTACTCTGCCTCTTCGACAGTTATCACCTTCGGACGCCCAATTCCTCTTCTTCGTGGGCCAATTCGAGCCGGTCAATCCGAAAATCCCTCGGCAGGTCCGTCCATGCTTGCATTTAGGGATCCCCAAGCGTGGGAATCTGCATACAAAATATGCGAGTTGAAGATTATTGAACAGTGCGAGGCCGGCGCGAGGATTGGCTGTTCAATAATTGCTTCCGACAAATGCAAGCCGCGGTGGTGGGGATTTTTGATGCAATCGAAGAAGGGGTTGGATTTGAAGGCGAGGGAGATGTGCGAAGAGCGAGAAATGGAGGCTTGCTTGGCTGCTGCAAAGGAGAAGTGTGTTGGTTTCGCGAAGGAGAAGTGTTCTAAGCCGTTCATGGATGCTAGAATTGGAATTTTTCAAAAGGTCTGA

mRNA sequence

ATGGAGTCCTCACAACCTCAGAATCCCGACGAGTACTCTGCCTCTTCGACAGTTATCACCTTCGGACGCCCAATTCCTCTTCTTCGTGGGCCAATTCGAGCCGGTCAATCCGAAAATCCCTCGGCAGGTCCGTCCATGCTTGCATTTAGGGATCCCCAAGCGTGGGAATCTGCATACAAAATATGCGAGTTGAAGATTATTGAACAGTGCGAGGCCGGCGCGAGGATTGGCTGTTCAATAATTGCTTCCGACAAATGCAAGCCGCGGTGGTGGGGATTTTTGATGCAATCGAAGAAGGGGTTGGATTTGAAGGCGAGGGAGATGTGCGAAGAGCGAGAAATGGAGGCTTGCTTGGCTGCTGCAAAGGAGAAGTGTGTTGGTTTCGCGAAGGAGAAGTGTTCTAAGCCGTTCATGGATGCTAGAATTGGAATTTTTCAAAAGGTCTGA

Coding sequence (CDS)

ATGGAGTCCTCACAACCTCAGAATCCCGACGAGTACTCTGCCTCTTCGACAGTTATCACCTTCGGACGCCCAATTCCTCTTCTTCGTGGGCCAATTCGAGCCGGTCAATCCGAAAATCCCTCGGCAGGTCCGTCCATGCTTGCATTTAGGGATCCCCAAGCGTGGGAATCTGCATACAAAATATGCGAGTTGAAGATTATTGAACAGTGCGAGGCCGGCGCGAGGATTGGCTGTTCAATAATTGCTTCCGACAAATGCAAGCCGCGGTGGTGGGGATTTTTGATGCAATCGAAGAAGGGGTTGGATTTGAAGGCGAGGGAGATGTGCGAAGAGCGAGAAATGGAGGCTTGCTTGGCTGCTGCAAAGGAGAAGTGTGTTGGTTTCGCGAAGGAGAAGTGTTCTAAGCCGTTCATGGATGCTAGAATTGGAATTTTTCAAAAGGTCTGA

Protein sequence

MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYKICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAAAKEKCVGFAKEKCSKPFMDARIGIFQKV
Homology
BLAST of CmoCh19G000180 vs. ExPASy TrEMBL
Match: A0A6J1HJ78 (uncharacterized protein LOC111464060 OS=Cucurbita moschata OX=3662 GN=LOC111464060 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.6e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0

Query: 1   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 60
           MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK
Sbjct: 8   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 67

Query: 61  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA
Sbjct: 68  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 127

Query: 121 AKEKCVGFAKEKCSKPFMDARIGIFQKV 149
           AKEKCVGFAKEKCSKPFMDARIGIFQKV
Sbjct: 128 AKEKCVGFAKEKCSKPFMDARIGIFQKV 155

BLAST of CmoCh19G000180 vs. ExPASy TrEMBL
Match: A0A6J1CY74 (uncharacterized protein LOC111015296 OS=Momordica charantia OX=3673 GN=LOC111015296 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.6e-66
Identity = 124/142 (87.32%), Postives = 131/142 (92.25%), Query Frame = 0

Query: 1   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 60
           ME SQPQNPD+YSASST+ITF RPIPL+RGPIRAG SENPSAGP +LAFRDPQAWESAYK
Sbjct: 9   MEPSQPQNPDDYSASSTIITFQRPIPLIRGPIRAGPSENPSAGPYLLAFRDPQAWESAYK 68

Query: 61  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE KIIEQCEAGARIGCSI AS+KCKP WWGFL+ S KGLDLK RE CEEREMEACLAA
Sbjct: 69  ICESKIIEQCEAGARIGCSITASNKCKPPWWGFLIHSSKGLDLKEREHCEEREMEACLAA 128

Query: 121 AKEKCVGFAKEKCSKPFMDARI 143
           AKEKCVGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

BLAST of CmoCh19G000180 vs. ExPASy TrEMBL
Match: A0A6J1JZ34 (uncharacterized protein LOC111491021 OS=Cucurbita maxima OX=3661 GN=LOC111491021 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.3e-64
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 0

Query: 1   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 60
           ME SQPQNPD+YSA++T+ITF RPIPLLRGPIRAG+SENPSAGP +LAFRDPQAWESAYK
Sbjct: 9   MEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRAGRSENPSAGPYLLAFRDPQAWESAYK 68

Query: 61  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE KIIEQCEAGARIGCSI A +KCK  WW FL+QSKKGLDLK RE CEEREMEACLA 
Sbjct: 69  ICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDREQCEEREMEACLAG 128

Query: 121 AKEKCVGFAKEKCSKPFMDARI 143
           AKEKCVGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

BLAST of CmoCh19G000180 vs. ExPASy TrEMBL
Match: A0A6J1ES78 (uncharacterized protein LOC111437258 OS=Cucurbita moschata OX=3662 GN=LOC111437258 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 119/142 (83.80%), Postives = 131/142 (92.25%), Query Frame = 0

Query: 1   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 60
           ME SQPQNPD+YSA++T+ITF RPIPLLRGPIR+G+SENPSAGP +LAFRDPQAW+SAYK
Sbjct: 9   MEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDPQAWKSAYK 68

Query: 61  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE KIIEQCEAGARIGCSI A +KCK  WW FL+QSKKGLDLK RE+CEEREMEACLA 
Sbjct: 69  ICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEEREMEACLAG 128

Query: 121 AKEKCVGFAKEKCSKPFMDARI 143
           AKEKCVGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

BLAST of CmoCh19G000180 vs. ExPASy TrEMBL
Match: A0A5A7UV37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G002790 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.3e-62
Identity = 118/142 (83.10%), Postives = 126/142 (88.73%), Query Frame = 0

Query: 1   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 60
           ME SQP NP EYSASST+ITF RPIPLLRGP+RA QSENPSAGP +LAF+D QAWESA+K
Sbjct: 9   MEPSQPHNPHEYSASSTIITFQRPIPLLRGPVRASQSENPSAGPYLLAFKDRQAWESAFK 68

Query: 61  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
            CE KIIEQCEAGARIGCSI AS+KCKP WWGFL +SKKGLDLK RE CEE EMEACLAA
Sbjct: 69  ACESKIIEQCEAGARIGCSITASNKCKPPWWGFLFRSKKGLDLKEREQCEELEMEACLAA 128

Query: 121 AKEKCVGFAKEKCSKPFMDARI 143
           AKEKCVGFAKEKC KPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCYKPFMEARI 150

BLAST of CmoCh19G000180 vs. TAIR 10
Match: AT3G63390.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 146.0 bits (367), Expect = 2.4e-35
Identity = 70/136 (51.47%), Postives = 92/136 (67.65%), Query Frame = 0

Query: 7   QNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYKICELKI 66
           ++ D++SA++T + F RPIPLLRGP+       PS G  +LAFR   +W +A+K CE  I
Sbjct: 3   EDDDDFSAAATTVVFDRPIPLLRGPV-------PSGGSYVLAFRSLDSWSAAFKRCETLI 62

Query: 67  IEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAAAKEKCV 126
            +QCE GA+IGC++ AS+ CKP WW        G D++ RE CEERE E C+AAAK KC 
Sbjct: 63  KDQCEEGAKIGCAVSASNNCKPPWW-----RGSGGDMREREKCEEREFEGCVAAAKGKCA 122

Query: 127 GFAKEKCSKPFMDARI 143
            FAK+KCS  F+DARI
Sbjct: 123 AFAKDKCSGAFLDARI 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HJ789.6e-80100.00uncharacterized protein LOC111464060 OS=Cucurbita moschata OX=3662 GN=LOC1114640... [more]
A0A6J1CY744.6e-6687.32uncharacterized protein LOC111015296 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1JZ343.3e-6485.21uncharacterized protein LOC111491021 OS=Cucurbita maxima OX=3661 GN=LOC111491021... [more]
A0A6J1ES781.3e-6383.80uncharacterized protein LOC111437258 OS=Cucurbita moschata OX=3662 GN=LOC1114372... [more]
A0A5A7UV375.3e-6283.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT3G63390.12.4e-3551.47unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36773EXPRESSED PROTEINcoord: 3..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G000180.1CmoCh19G000180.1mRNA