CmoCh18G013410 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G013410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionVesicle transport protein
LocationCmo_Chr18: 12699819 .. 12703753 (-)
RNA-Seq ExpressionCmoCh18G013410
SyntenyCmoCh18G013410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTCAAAATTGGCTCGAAAGTGCTTTATTGGTTGAGCCTCTAGCACGTGGGTTTGGTTTACCTACGAGCAATCAGCATTCCTCAAGTCCCACGTCTTCCAGCTAAAGGTCCACCGTCCTCTCGTATCCGAAACTTTGGTCGACACCTTCGAAGACCGCGGGAGCTCACCCAATACTGAATTTCCATCAAAATGTGGAAGCTCGGCCTAGGCGTATTTGGCGACGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCAGAAGATCTGTGCTCTCTAACTCCTGTACAGGTACTTTAAACAACGATCAGAGAGCTCCACTTGTGGATAATTTTATGGATTTTGCTTTTTGTTATTTTTTTTTTCCAGTTTTCATACTGTGTTGGATTTTTGACGAACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGGTATGAATATTTAAGCGATTTCTTCATTTTGATACAATGGCATATATGTTTTTTCTGTATGCATCTTGTGTAAATGGCGAACAGCTTTGATGATAATTTTGGATTTGGACCTAAGTTACGCTCTGGGTATGATCGGTAACTCGGGTTTTCTTTATTTCCATTGATTGTCTTGAGATGTAAATAAGATTTTTATTCTCTCAGTATTCACTGGTTGGTCCTTGGGACTTCAAGAATGAATTATAAAAGCACAACAAACAAGGAAGGTATTATTGATTTGGAATAGAAAGCCAAGGAATTTCCTCTAAGAAGGGAATGCTAAAGAAAAATTAAGTCGCTTGGTCCATTGGGAGATTGTTACTACCTATTGTAAACGGAGGACTCTAGATTGGGATTTCGAGGAAGGAAAACGGACCTGAATTATCCAATGGATATGGCGGACTTTTTACCGATTCTGATGAATTGTGGAACGAGACTCAATCCAATATCTATGGAGAGAACAGAGGAGGTTAAGTAAGGAGGGTTAGGTGCTACTGCTATCAAATTCCTTGGTCCAATACAAAAATGTAATATGATTTATTGAGGCATTCACTAGCATTGATGTGGCAAATTGAAGGAAAACGTTTTACCTATTATTCTCTTTCTTTGTTGATTTCCAATCAGAGAGTTTTCATGTAATTCACCTCTAGGTGTTGGGAATTTTTACTCCCTTTATTTCGTTCGCAATGAAATACGTTTCTCTTTTCAAAAAAATTGAAAGACGTTTTTCTCCTTAAAAGAAATGTAGGGAAAGCCTTATTCTAGAGACTGCTGGGTCGGAAAGGGAAGTCATCTGTTGGGAGGATTTGTTAGATTGTCTGTAGTTTCTGCAGACAAGAAATGACCGTAGGTGAGGCTTGGGAGGATGTTCTTGGAATATGACAACGTTGAGAACCTAACTGACCAGAAATTGGCATTGAGCAAGAAGTTGTCTGCAGCAATCATGGGAGATCCCGCATCGATTGGGGAGGAGAACGAAACATTCGTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGTGTTTTAAAAACTTTGAAGCCCGAACGGGAAAGCTCAAAGAGGATAATATCTGCTAGCAGTGGGATTGGACTGTTACAAATGGTATCAAAGCCAGACACTGGGTGATGTGCCAGCGAGAAGGTTGAGCCCCGAAGGGGAGTGGACACAAGGCGGTGTGCCAACAAGGACGTTGGGCCACGAAAGGGGGTGGATTGGGGGGTCCCACATCGATGGGAGAAAGGAACGAGTGCCAATAGGGACGTTGGTCTCTGAAGGGGGGTGGATTGTGAGATCTTACATCGGTTGGGGAGCAGAACGAAACATTCTTTATTAGGGTGGTCTCCAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGTTTTAATATCTGCTAGCGGTGGCCTTAGGTTGTTACAAATCAGGAAGGAAAGAAGCCGTGAGTAAGTTCCCTTCTTTGTGTGGACATTACGTGATGAGGTGTAAATTCAGCTGAGGGGAGGGATTCAAAGGGAACTGTATGGTTTTAAAACCCTGTTAGTGCATCCTTTGTTGCAAAGAAGAAAAGGGACAAGATCACCTCTTTTTTCCCTGTTACTACTGTTAGCTGTGTTGGAAATCTCAACTCAATAAAATGCAGTTCCCTTGTAAAAGTCTGTGAAAAAAGGATGTTATCCCATTGTTATCGAGTAACAAACTTGAGACGAAAGCTAAAATCATATGGGTTAATGCATTAAAAGCAATTTGGGGTTTGCAGTTAGGTGGAAATACATGATTAACAAACAAAAATCTTCTTCAACATTGCATTATCTTAATCGGTAAACAATGAGCCTGTTCGAAAGTTAAAGATAATTGTCAATGACGTAATGCGTTACTGGCTATTTGTCCTGAACCAATGTCATACCCTTTTCACTGCACAGTATCAAACAGATGATTTTGTTCATTGTTCTTTCTTAATCAGTGATATTTTTTATCTCATGTTTTTTTCCCTCTGAAATCCCATTTGGATTTTTATGATTCTAGAATAACATACCCCATCTCTGTATTCTTGCTAGCTCTTTTGCTGGAACTGCATTTGATGTGTTTGCTCCATTTTTTTGTTGATGCAGTCACTGCTTGTTTTTGCCAAGCCAATTAAATTTGCTGCACTCTTTACATTTGGCAATGTTCTGGCAGTCGGAAGGTTGGTTAACCAGCTAAATTAGACAGCTCTTTTATAACATTTTTTATGTCAGCAGTTAAGAAGTATTGCTAGGAGCAGCACTTTTGTTTACTTTCATTGCCAATTCATTGTTCTTGTTTGCATCTAATTCTTCTGTAATCTTCTATTTCATAAATTTCCTCAGAAGAAGTCTATTGGTGTACAAACAAAAGGAAGATTATCGGGGAGGAAAACCCTTTAATGTTTTTTTTTCACTGTGTTGTTCCTTTTCCTTGAGGTATTAATATTCTAAACCGCCTCTTATTTGGCAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGGTAAGTTACAATTCAAAATGCATATGACATTTGACATCATAGGGGAAAACAGACTTTAATTCCTAGCACACCCAGATATTCAATAAACAATCTTCTAGACATCTTTGGAACACAACGTTAATGGATTTTTTCTATTAGACTGTATGTTGGTCTATTCCACAAAATCTCCCATAGACCGTTTTAGCATTGTTTTCCTTTAACTCTTGCATAAAACATGTATCAAAATGTTATATGAACTTGAAATGGACCTGCAAACAGTTAATGCCTCATCTTTTAGTTTGTAATTGTGATTCTTTGCTATTTCTTTTTCATTTTTCAGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGCGCACTTATATGGTACGTTTAACGTTTTCATTGACCTTCCTCCATTTGATTCAAGTTTCTTGAAACTAGAGGATAAAGGCTCTTCTTCGTTGAAAAATGTGTTTAATCATATCTTCCGAGACTTTTCTTGAATCTAAACTAGAATGGGCCATGACTTTCTTGGTTTATCCTGTTCCAGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAGACAACGAAACTTGCGATGATGACTGATGATTCAGTCTCTTTAAGATCTGGGATTTTCTTTTGTCCTTGTTTTTATTTTAGTGAGCACAAAACCAGTTGAAGATTTGTTTTTATTTTTATTTTTTATATTTATTTGTTTTTATTTGTCCACATAAATGTATAATCCAAAGCCAGTTCAATGCTTGTGCTAATCTTCTAATGTAACAGCATTCTTTTCGCAG

mRNA sequence

AACTCAAAATTGGCTCGAAAGTGCTTTATTGGTTGAGCCTCTAGCACGTGGGTTTGGTTTACCTACGAGCAATCAGCATTCCTCAAGTCCCACGTCTTCCAGCTAAAGGTCCACCGTCCTCTCGTATCCGAAACTTTGGTCGACACCTTCGAAGACCGCGGGAGCTCACCCAATACTGAATTTCCATCAAAATGTGGAAGCTCGGCCTAGGCGTATTTGGCGACGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCAGAAGATCTGTGCTCTCTAACTCCTGTACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGTCACTGCTTGTTTTTGCCAAGCCAATTAAATTTGCTGCACTCTTTACATTTGGCAATGTTCTGGCAGTCGGAAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGCGCACTTATATGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAGACAACGAAACTTGCGATGATGACTGATGATTCAGTCTCTTTAAGATCTGGGATTTTCTTTTGTCCTTGTTTTTATTTTAGTGAGCACAAAACCAGTTGAAGATTTGTTTTTATTTTTATTTTTTATATTTATTTGTTTTTATTTGTCCACATAAATGTATAATCCAAAGCCAGTTCAATGCTTGTGCTAATCTTCTAATGTAACAGCATTCTTTTCGCAG

Coding sequence (CDS)

ATGTGGAAGCTCGGCCTAGGCGTATTTGGCGACGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCAGAAGATCTGTGCTCTCTAACTCCTGTACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGTCACTGCTTGTTTTTGCCAAGCCAATTAAATTTGCTGCACTCTTTACATTTGGCAATGTTCTGGCAGTCGGAAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGCGCACTTATATGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAG

Protein sequence

MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKPIKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Homology
[Close]
BLAST of CmoCh18G013410 vs. ExPASy Swiss-Prot
Match: O95562 (Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-17
Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 0 

Query: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60
           M KL   + G D E    L   +  +  SL+   R+ GF  C   G++C ++  ++   P
Sbjct: 1   MDKLKKVLSGQDTEDRSGL--SEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVP 60

Query: 61  IK----FAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALL 120
            K    FA  +TFGN+ ++GST FL GP +Q++ MF+  R+ AT + L C  L L  A  
Sbjct: 61  RKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFW 120

Query: 121 IHNKILTVIAMTSEICALIWYSLSYIPFARRMVSE 152
            HNK L +I    +  AL WYSLS+IPFAR  V +
Sbjct: 121 WHNKGLALIFCILQSLALTWYSLSFIPFARDAVKK 153

[Close]
BLAST of CmoCh18G013410 vs. ExPASy Swiss-Prot
Match: Q8VD57 (Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.1e-17
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 0 

Query: 19  LLDEDSEDLCSLTPV---------QRLYGFGGCLTGGVVCMIVSLLVFAKPIK----FAA 78
           L  +D+ED   L+ V          R+ GF  C   G++C ++  L+   P K    FA 
Sbjct: 8   LSGQDTEDRSGLSEVVEASSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAV 67

Query: 79  LFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVI 138
            +T GN++++GST FL GP +Q++ MF+  R+ AT + L C  L L C+  + NK L +I
Sbjct: 68  FYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWNKGLALI 127

Query: 139 AMTSEICALIWYSLSYIPFARRMVSE 152
               +  AL WYSLSYIP+AR  V +
Sbjct: 128 FCILQSLALTWYSLSYIPYARDAVKK 152

[Close]
BLAST of CmoCh18G013410 vs. ExPASy Swiss-Prot
Match: Q8WV19 (Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 60/154 (38.96%), Postives = 83/154 (53.90%), Query Frame = 0 

Query: 11  DDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV--SLLVFAKPIK-FAALF 70
           DDEE+G   L     D  SL+   RL  F  C   GV   I+   LL     IK FA  +
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGIKLFAVFY 71

Query: 71  TFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAM 130
           T GN+ A+ ST FL GP +Q++ MF++ R+ AT + L C +  L  AL  H K L V+  
Sbjct: 72  TLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFC 131

Query: 131 TSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
             +  ++ WYSLSYIP+AR    + +I+ C + L
Sbjct: 132 ILQFLSMTWYSLSYIPYAR----DAVIKCCSSLL 158

[Close]
BLAST of CmoCh18G013410 vs. ExPASy Swiss-Prot
Match: Q4FZV2 (Vesicle transport protein SFT2B OS=Rattus norvegicus OX=10116 GN=Sft2d2 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 0 

Query: 19  LLDEDSEDLCSLTPV---------QRLYGFGGCLTGGVVCMIVS--LLVFAKPIKFAALF 78
           L  +D+ED   L+ V          R+ GF  C   G++C ++   LL  ++   FA  +
Sbjct: 8   LSGQDTEDRSGLSEVVESSSLSWSTRIKGFIVCFALGILCSLLGTLLLWVSRKGLFAVFY 67

Query: 79  TFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAM 138
           T GN+ ++GST FL GP +Q++ MF+  R+ AT + L   VL L C+  + NK L +I  
Sbjct: 68  TLGNITSIGSTMFLMGPLKQLKRMFEPTRLIATILVLLFFVLTL-CSAFLWNKGLALIFC 127

Query: 139 TSEICALIWYSLSYIPFARRMVSE 152
             +  AL WYSLSYIP+AR  V +
Sbjct: 128 ILQSLALTWYSLSYIPYARDAVKK 150

[Close]
BLAST of CmoCh18G013410 vs. ExPASy Swiss-Prot
Match: Q5U3Y5 (Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.6e-14
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 0 

Query: 11  DDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV--SLLVFAKPIK-FAALF 70
           DDEE+G   L     D  SL+   RL  F  C   G+   I+   LL     +K FA  +
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGVKLFAVFY 71

Query: 71  TFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAM 130
           T GN+ A+ ST FL GP +Q++ MF++ R+ AT I L C+V  L  AL    K L ++  
Sbjct: 72  TLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFC 131

Query: 131 TSEICALIWYSLSYIPFARRMV 150
             +  ++ WYSLSYIP+AR  V
Sbjct: 132 ILQFLSMTWYSLSYIPYARDAV 150

[Close]
BLAST of CmoCh18G013410 vs. ExPASy TrEMBL
Match: A0A6J1HVF1 (Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.7e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60
           MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60

Query: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK
Sbjct: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120

Query: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Sbjct: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

[Close]
BLAST of CmoCh18G013410 vs. ExPASy TrEMBL
Match: A0A6J1G0G6 (Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111449568 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.7e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60
           MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60

Query: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK
Sbjct: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120

Query: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Sbjct: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

[Close]
BLAST of CmoCh18G013410 vs. ExPASy TrEMBL
Match: A0A6J1CHR6 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 149/161 (92.55%), Postives = 154/161 (95.65%), Query Frame = 0 

Query: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60
           MWKL  GVFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM++SLLVFAKP
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLSLLVFAKP 60

Query: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFA LFTFGNVLAVGSTAFLFGPGQQ+RMMFDSVRIYATAIYLGCVVLALICAL IHNK
Sbjct: 61  IKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIYATAIYLGCVVLALICALWIHNK 120

Query: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIA+ SEICALIWYSLSYIPFARRMVSELMIR CDTEL
Sbjct: 121 ILTVIAIISEICALIWYSLSYIPFARRMVSELMIRLCDTEL 161

[Close]
BLAST of CmoCh18G013410 vs. ExPASy TrEMBL
Match: A0A1S3B3W0 (Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103485702 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 146/161 (90.68%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60
           MWKL  GVF DDEER QSLLDEDSEDLCSLTPVQRLY FGGCLTGGVVCMI+SLLVFAKP
Sbjct: 1   MWKLSDGVFVDDEERSQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAKP 60

Query: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           +KFA LFTFGNVLAVGSTAFLFGPGQQ+RMMFDSVRI+ATAIYLGCVVLALICAL IHNK
Sbjct: 61  LKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIFATAIYLGCVVLALICALWIHNK 120

Query: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTV AM SEICALIWYSLSYIPFARRMVS+LM+RFCDTEL
Sbjct: 121 ILTVFAMISEICALIWYSLSYIPFARRMVSQLMVRFCDTEL 161

[Close]
BLAST of CmoCh18G013410 vs. ExPASy TrEMBL
Match: A0A6J1CIC0 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.5e-73
Identity = 149/181 (82.32%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV-------- 60
           MWKL  GVFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM++        
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLAICLVLMS 60

Query: 61  ------------SLLVFAKPIKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYAT 120
                       SLLVFAKPIKFA LFTFGNVLAVGSTAFLFGPGQQ+RMMFDSVRIYAT
Sbjct: 61  YTSHYPASTDDFSLLVFAKPIKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIYAT 120

Query: 121 AIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTE 162
           AIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSLSYIPFARRMVSELMIR CDTE
Sbjct: 121 AIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSELMIRLCDTE 180

[Close]
BLAST of CmoCh18G013410 vs. TAIR 10
Match: AT5G24170.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 204.5 bits (519), Expect = 6.3e-53
Identity = 104/152 (68.42%), Postives = 123/152 (80.92%), Query Frame = 0 

Query: 10  GDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKPIKFAALFTF 69
           GD +    S L++ SE LC+L+  QR+YGF   L  G++ M +S++VF  PIKFA LFTF
Sbjct: 12  GDGDGTTDSFLEDGSEGLCALSTTQRMYGFAASLATGLLLMFLSMIVFGIPIKFALLFTF 71

Query: 70  GNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTS 129
           GNVLA+GSTAFL GP QQM MMFD VR  AT+IY+GCVV+ALICALLIH+KILTV+A+  
Sbjct: 72  GNVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILC 131

Query: 130 EICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           EICALIWYSLSYIPFARRMVSE+MIR CDTEL
Sbjct: 132 EICALIWYSLSYIPFARRMVSEIMIRLCDTEL 163

[Close]
BLAST of CmoCh18G013410 vs. TAIR 10
Match: AT5G23550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-38
Identity = 80/149 (53.69%), Postives = 105/149 (70.47%), Query Frame = 0 

Query: 12  DEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKPIKFAALFTFGN 71
           DEE   S + ED    C+LT  QR YGF  CL+ G+ C ++S+LVF  P+KF   FT GN
Sbjct: 27  DEESSLSFM-EDLNRNCALTTKQRFYGFAICLSAGLTCTLLSMLVFFNPVKFGITFTLGN 86

Query: 72  VLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEI 131
           ++A+GSTAFL GP +Q+ MM D  RIYATA+YL  +++AL CAL + NK+LT++A+  E 
Sbjct: 87  LMALGSTAFLIGPQRQVTMMLDPARIYATALYLASIIIALFCALYVRNKLLTLLAIILEF 146

Query: 132 CALIWYSLSYIPFARRMVSELMIRFCDTE 161
             LIWYSLSYIPFAR MVS++ +   DTE
Sbjct: 147 TGLIWYSLSYIPFARTMVSKIFMTCFDTE 174

[Close]
BLAST of CmoCh18G013410 vs. TAIR 10
Match: AT4G26550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-06
Identity = 35/120 (29.17%), Postives = 61/120 (50.83%), Query Frame = 0 

Query: 29  SLTPVQRLYGFGGCLTGGVVCMIVSLLVF-----AKPIKFAALFTFGNVLAVGSTAFLFG 88
           S+   + L  FG  L  GV  + ++  +F       P KFA  FT G    +GS   L G
Sbjct: 83  SMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCGFIIGSFFALRG 142

Query: 89  PGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIP 144
           P  Q+  M    R+ +T  ++  +V  +  ++++H+ IL+V+    ++ AL++Y +SY P
Sbjct: 143 PKNQLAHMSSMERLPSTLGFIATMVGTIYVSMVLHSYILSVLFSVLQVLALVYYCISYFP 202

[Close]
BLAST of CmoCh18G013410 vs. TAIR 10
Match: AT5G56020.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 48.1 bits (113), Expect = 7.5e-06
Identity = 36/120 (30.00%), Postives = 60/120 (50.00%), Query Frame = 0 

Query: 29  SLTPVQRLYGFGGCLTGGVVCMIVSLLVF-----AKPIKFAALFTFGNVLAVGSTAFLFG 88
           S+   + L  FG  L  GV  + ++  +F       P KFA  FT G    +GS   L G
Sbjct: 88  SMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCGFIIGSFFALRG 147

Query: 89  PGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIP 144
           P  Q+  M  + R+  T  ++  +V  +  ++++H+ IL+VI    ++ AL +Y +SY P
Sbjct: 148 PQNQLAHMSSAERLPLTLGFIATMVGTIYVSMVLHSYILSVIFSALQVIALAYYCISYFP 207

The following BLAST results are available for this feature:
BLAST of CmoCh18G013410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O955621.9e-1738.06Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1[more]
Q8VD577.1e-1737.67Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1[more]
Q8WV191.1e-1438.96Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1[more]
Q4FZV21.9e-1437.50Vesicle transport protein SFT2B OS=Rattus norvegicus OX=10116 GN=Sft2d2 PE=2 SV=... [more]
Q5U3Y59.6e-1439.44Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=... [more]
BLAST of CmoCh18G013410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVF17.7e-83100.00Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1[more]
A0A6J1G0G67.7e-83100.00Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111449568 PE=3 SV=... [more]
A0A6J1CHR62.4e-7692.55Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV... [more]
A0A1S3B3W01.7e-7490.68Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103485702 PE=3 SV=1[more]
A0A6J1CIC09.5e-7382.32Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV... [more]
BLAST of CmoCh18G013410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24170.16.3e-5368.42Got1/Sft2-like vescicle transport protein family [more]
AT5G23550.11.2e-3853.69Got1/Sft2-like vescicle transport protein family [more]
AT4G26550.14.4e-0629.17Got1/Sft2-like vescicle transport protein family [more]
AT5G56020.17.5e-0630.00Got1/Sft2-like vescicle transport protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007305Vesicle transport protein, Got1/SFT2-likePFAMPF04178Got1coord: 46..152
e-value: 3.9E-33
score: 114.2
IPR011691Vesicle transport protein SFT2PANTHERPTHR23137UNCHARACTERIZEDcoord: 16..161
NoneNo IPR availablePANTHERPTHR23137:SF29VESICLE TRANSPORT PROTEINcoord: 16..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G013410.1CmoCh18G013410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane