CmoCh18G012680 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G012680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	remorin
Location	Cmo_Chr18: 12350426 .. 12351498 (-)
RNA-Seq Expression	CmoCh18G012680
Synteny	CmoCh18G012680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCACACTTCCCTTCTTCTTCCTCCAACTATAATATCTCAACCACTCTCTCTCTCTCATTTATTTCTCTCTCTTTACTCAGAAAATGGCTGACGATGAGCCCAAGAGGCTGGATTCTGAACCTCCGTCCGAGTCCTCTCCGCCGCAAGTGGCGGAGCTGGTGGAGGAGCCGACTAAAAACGTGGCGGAGGAGAAATCAATCATCCAGTTAACCCCGCCGGAGAAGACGCCGGCTGATGACTCCAAACCTCTGCTTATCATTGAAAGTAATTTACAGACATAAAGCTCTTAACTTCTTCATTTGTTTTCATTCTTTTTCGCTTTTTGGAGCTGTTTGGTTGATGGGAAAAAAAAATTAAAAGGAAAAAAGAATAAAAAAAGGGATTGAACTTTGGAATTCATCTTGCTCTGTTTTGACAGAGACTGAAGCAAAAACAGAGGAGAAACAGAGTAGCTCAATTAATAGAGGTAATTAACTAGCCATATGAAGTGATTAATGTCAATAATTTAATACCCAAATGAAAAATTGAATAAATTTCTTTGTTTTTATGGCTCTTAGATGCTGAGCTTGCAAGAGTAGCAACAGAGAAGAGACTGACACTCATTAAAGCTTGGGAAGAGAGTGAAAAATCAAGAACAGAGAACAGGTACCCATAATTTTGTTGTTGAGTATTAAAGAGATCTAAGGTAGATAGCTAATGGAGTTCATTGAGCAGAGCTCACAAAAAGCTATCAGAAATTGGGTCATGGGAGAGCAGCAAGAAAGCGGCGGTGGAGGCTGAGCTAAAACAGATTGAGGTAAGCAATATGAACATGGAATCTGTTTGGATGCCGAGAAAATTTTGGTGTGAAAATATATGTTTGTGTTTGAGAACAGGAAAAGTTTGAGAAGAAGAAAGCGGAATATGTTGAGAAAATGAAGAACAAAATAGCGTTGATTCATAAAGCAGCAGAAGAGAAGAAGGCAGTGATTGAAGCGAAACGTGGAGAAGAGAAGCTTAAAGCAGAGGAAATTGCTGCAAAATACAGAGCCACTGGAACTGCTCCAAAGAAGATTCTTGGTTGTTTCTAA

mRNA sequence

TCCTCACACTTCCCTTCTTCTTCCTCCAACTATAATATCTCAACCACTCTCTCTCTCTCATTTATTTCTCTCTCTTTACTCAGAAAATGGCTGACGATGAGCCCAAGAGGCTGGATTCTGAACCTCCGTCCGAGTCCTCTCCGCCGCAAGTGGCGGAGCTGGTGGAGGAGCCGACTAAAAACGTGGCGGAGGAGAAATCAATCATCCAGTTAACCCCGCCGGAGAAGACGCCGGCTGATGACTCCAAACCTCTGCTTATCATTGAAAAGACTGAAGCAAAAACAGAGGAGAAACAGAGTAGCTCAATTAATAGAGATGCTGAGCTTGCAAGAGTAGCAACAGAGAAGAGACTGACACTCATTAAAGCTTGGGAAGAGAGTGAAAAATCAAGAACAGAGAACAGAGCTCACAAAAAGCTATCAGAAATTGGGTCATGGGAGAGCAGCAAGAAAGCGGCGGTGGAGGCTGAGCTAAAACAGATTGAGGAAAAGTTTGAGAAGAAGAAAGCGGAATATGTTGAGAAAATGAAGAACAAAATAGCGTTGATTCATAAAGCAGCAGAAGAGAAGAAGGCAGTGATTGAAGCGAAACGTGGAGAAGAGAAGCTTAAAGCAGAGGAAATTGCTGCAAAATACAGAGCCACTGGAACTGCTCCAAAGAAGATTCTTGGTTGTTTCTAA

Coding sequence (CDS)

ATGGCTGACGATGAGCCCAAGAGGCTGGATTCTGAACCTCCGTCCGAGTCCTCTCCGCCGCAAGTGGCGGAGCTGGTGGAGGAGCCGACTAAAAACGTGGCGGAGGAGAAATCAATCATCCAGTTAACCCCGCCGGAGAAGACGCCGGCTGATGACTCCAAACCTCTGCTTATCATTGAAAAGACTGAAGCAAAAACAGAGGAGAAACAGAGTAGCTCAATTAATAGAGATGCTGAGCTTGCAAGAGTAGCAACAGAGAAGAGACTGACACTCATTAAAGCTTGGGAAGAGAGTGAAAAATCAAGAACAGAGAACAGAGCTCACAAAAAGCTATCAGAAATTGGGTCATGGGAGAGCAGCAAGAAAGCGGCGGTGGAGGCTGAGCTAAAACAGATTGAGGAAAAGTTTGAGAAGAAGAAAGCGGAATATGTTGAGAAAATGAAGAACAAAATAGCGTTGATTCATAAAGCAGCAGAAGAGAAGAAGGCAGTGATTGAAGCGAAACGTGGAGAAGAGAAGCTTAAAGCAGAGGAAATTGCTGCAAAATACAGAGCCACTGGAACTGCTCCAAAGAAGATTCTTGGTTGTTTCTAA

Protein sequence

MADDEPKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIIEKTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIAAKYRATGTAPKKILGCF

Homology

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BLAST of CmoCh18G012680 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-50
Identity = 126/202 (62.38%), Postives = 158/202 (78.22%), Query Frame = 0


Query: 1   MADDEPKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSII--QLTPP--EKTPADDSKPL 60
           MA+ E K+++   P+  +P      VE P + VA+EK+I+   L PP  EK   DDSK L
Sbjct: 1   MAELEAKKVEIVDPAPPAPGP----VEAPKEVVADEKAIVAPALPPPAEEKEKPDDSKAL 60

Query: 61  LIIE-KTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIG 120
           +++E K     +EK+  SI+RDA LARVATEKR++LIKAWEESEKS+ EN+A KK+S IG
Sbjct: 61  VVVETKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIG 120

Query: 121 SWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLK 180
           +WE+SKKA +EAELK++EE+ EKKKAEY EKMKNKIAL+HK AEEK+A+IEAKRGE+ LK
Sbjct: 121 AWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLK 180

Query: 181 AEEIAAKYRATGTAPKKILGCF 198
           AEE+AAKYRATGTAPKKILG F
Sbjct: 181 AEELAAKYRATGTAPKKILGIF 198

[Close]

BLAST of CmoCh18G012680 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.7e-47
Identity = 124/205 (60.49%), Postives = 158/205 (77.07%), Query Frame = 0


Query: 1   MADDEPKRLDSEPPSESSP-PQVAELVEEP--TKNVAEEKSIIQLTP--PEKTPA----D 60
           MA++EPK++ +E  SE +P P+V   VE+P    +VA ++  +   P  P   PA    +
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEVP--VEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQE 60

Query: 61  DSKPLLIIEKTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKL 120
           DSK ++ +   E + EEK+  S+NRDA LARV TEKR++LIKAWEE+EK + EN+A KKL
Sbjct: 61  DSKAIVPVVPKEVE-EEKKEGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKL 120

Query: 121 SEIGSWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGE 180
           S IGSWE++KKAAVEAELK++EE+ EKKKAEYVE+MKNKIA IHK AEEK+A+IEAKRGE
Sbjct: 121 SSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGE 180

Query: 181 EKLKAEEIAAKYRATGTAPKKILGC 197
           E LKAEE+AAKYRATGTAPKK+ GC
Sbjct: 181 EILKAEELAAKYRATGTAPKKLFGC 201

[Close]

BLAST of CmoCh18G012680 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-42
Identity = 108/194 (55.67%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 6   PKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIIEK--TE 65
           P    +  P+E   P  A    + TK+VAEEK  IQ  PPE+   DDSK L ++EK   E
Sbjct: 22  PADTPAPAPAEIPAPAPAPTPADVTKDVAEEK--IQNPPPEQI-FDDSKALTVVEKPVEE 81

Query: 66  AKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESSKKA 125
               +  S+S++RD +LA ++ EKRL+ ++AWEESEKS+ EN+A KK++++ +WE+SKKA
Sbjct: 82  PAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKA 141

Query: 126 AVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIAAKY 185
           AVEA+LK+IEE+ EKKKAEY E+MKNK+A IHK AEE++A+IEAKRGE+ LKAEE AAKY
Sbjct: 142 AVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKY 201

Query: 186 RATGTAPKKILGCF 198
           RATG  PK   GCF
Sbjct: 202 RATGIVPKATCGCF 212

[Close]

BLAST of CmoCh18G012680 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-37
Identity = 107/200 (53.50%), Postives = 139/200 (69.50%), Query Frame = 0


Query: 3   DDEPKRLDSEPPSESSPPQVAELVEEPTK---NVAEEKSIIQLTPPEKTPADDSKPLLII 62
           + +  ++D E P+  +P       +EPT     VA+EK  I   PP      +SK L ++
Sbjct: 4   EQKTSKVDVESPAVLAP------AKEPTPAPVEVADEK--IHNPPPV-----ESKALAVV 63

Query: 63  EK-TEAKTEEKQSS-SINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSW 122
           EK  E  T +K SS S +RD  LA +  EK+ + IKAWEESEKS+ ENRA KK+S++ +W
Sbjct: 64  EKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAW 123

Query: 123 ESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAE 182
           E+SKKAAVEA+L++IEEK EKKKA+Y EKMKNK+A IHK AEEK+A++EAK+GEE LKAE
Sbjct: 124 ENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAE 183

Query: 183 EIAAKYRATGTAPKKILGCF 198
           E+ AKYRATG  PK   GCF
Sbjct: 184 EMGAKYRATGVVPKATCGCF 190

[Close]

BLAST of CmoCh18G012680 vs. ExPASy Swiss-Prot
Match: Q7XII4 (Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 77  DAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESSKKAAVEAELKQIEEKF 136
           +  + +V  E+  + I AW+ +E ++  NR  ++   I  WE  +     A LK+ E K 
Sbjct: 197 EVSVGQVKKEEVESKIAAWQIAEVAKVNNRFKREEVVINGWEGDQVEKANAWLKKYERKL 256

Query: 137 EKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIAAKYRATGTAPKK 193
           E+K+A+ +EK +N++A   + AEEK+A  EAKRG +  +  E+A   RA G AP K
Sbjct: 257 EEKRAKAMEKAQNEVAKARRKAEEKRASAEAKRGTKVARVLELANFMRAVGRAPSK 312

[Close]

BLAST of CmoCh18G012680 vs. ExPASy TrEMBL
Match: A0A6J1FZ79 (remorin OS=Cucurbita moschata OX=3662 GN=LOC111449242 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.5e-93
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MADDEPKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIIE 60
           MADDEPKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIIE
Sbjct: 1   MADDEPKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIIE 60

Query: 61  KTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESS 120
           KTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESS
Sbjct: 61  KTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESS 120

Query: 121 KKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIA 180
           KKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIA
Sbjct: 121 KKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIA 180

Query: 181 AKYRATGTAPKKILGCF 198
           AKYRATGTAPKKILGCF
Sbjct: 181 AKYRATGTAPKKILGCF 197

[Close]

BLAST of CmoCh18G012680 vs. ExPASy TrEMBL
Match: A0A6J1HZY5 (remorin-like OS=Cucurbita maxima OX=3661 GN=LOC111467746 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.2e-91
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MADDEPKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIIE 60
           MADDEPK+L+SEPPSE SPPQ AELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLI E
Sbjct: 1   MADDEPKKLESEPPSEPSPPQAAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIFE 60

Query: 61  KTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESS 120
           KTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESS
Sbjct: 61  KTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESS 120

Query: 121 KKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIA 180
           KKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIA
Sbjct: 121 KKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIA 180

Query: 181 AKYRATGTAPKKILGCF 198
           AKYRATGTAPKKILGCF
Sbjct: 181 AKYRATGTAPKKILGCF 197

[Close]

BLAST of CmoCh18G012680 vs. ExPASy TrEMBL
Match: A0A0A0L9S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182080 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64
Identity = 155/203 (76.35%), Postives = 171/203 (84.24%), Query Frame = 0


Query: 1   MADDEPKRLD-SEPPSESSPPQVAELVEEPTK-NVAEEKSIIQLTPPE-KTPADDSKPLL 60
           MA DEPK+++  E PSE+ PP     V EPTK +VAEEKSII L PPE + PADDSK L 
Sbjct: 1   MASDEPKQIEPEESPSEAPPPPPPPAVAEPTKDDVAEEKSIIPLLPPEDEKPADDSKALA 60

Query: 61  IIEKTEAKTEEKQ---SSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEI 120
           I+EK++ K EEK+     SINRDA LARVATEKRL+LIKAWEESEKS+ ENRAHKKLS I
Sbjct: 61  IVEKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAI 120

Query: 121 GSWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKL 180
           GSWE+SKKAAVEAELKQIEEKFEKKK E++EKMKNKIA IHK AEEKKAVIEAKRGEEKL
Sbjct: 121 GSWENSKKAAVEAELKQIEEKFEKKKGEHIEKMKNKIASIHKKAEEKKAVIEAKRGEEKL 180

Query: 181 KAEEIAAKYRATGTAPKKILGCF 198
           KAEEIAAK+RATGTAPKKI GCF
Sbjct: 181 KAEEIAAKHRATGTAPKKIFGCF 203

[Close]

BLAST of CmoCh18G012680 vs. ExPASy TrEMBL
Match: A0A1S3AXW2 (remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.3e-63
Identity = 155/202 (76.73%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 2   ADDEPKRLDS-EPPSESSPPQVAELVEEPTK-NVAEEKSIIQLTPPE-KTPADDSKPLLI 61
           + DEPK+++S E PSE  PP  A    EPTK +VAEEKSII L PPE + PADDSK L I
Sbjct: 3   SSDEPKKIESEESPSEPPPPAAA----EPTKDDVAEEKSIIPLPPPEDEKPADDSKALAI 62

Query: 62  IEKTEAKTEEKQ---SSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIG 121
           +EK++ K EEK+     SINRDA LARVATEKRL+LIKAWEESEKS+ ENRAHKKLS IG
Sbjct: 63  VEKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIG 122

Query: 122 SWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLK 181
           SWE+SKKAAVEAELKQIEEK EKKK EY+EKMKNKIALIHK AEEKKAVIEAKRGEEKLK
Sbjct: 123 SWENSKKAAVEAELKQIEEKLEKKKGEYIEKMKNKIALIHKTAEEKKAVIEAKRGEEKLK 182

Query: 182 AEEIAAKYRATGTAPKKILGCF 198
           AEEIAAK+RATGTAPKKI GCF
Sbjct: 183 AEEIAAKHRATGTAPKKIFGCF 200

[Close]

BLAST of CmoCh18G012680 vs. ExPASy TrEMBL
Match: A0A5A7SRU5 (Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00800 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 6.4e-63
Identity = 154/202 (76.24%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 2   ADDEPKRLDS-EPPSESSPPQVAELVEEPTK-NVAEEKSIIQLTPPE-KTPADDSKPLLI 61
           + DEPK+++S E P E  PP  A    EPTK +VAEEKSII L PPE + PADDSK L I
Sbjct: 3   SSDEPKKIESEESPLEPPPPAAA----EPTKDDVAEEKSIIPLPPPEDEKPADDSKALAI 62

Query: 62  IEKTEAKTEEKQ---SSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIG 121
           +EK++ K EEK+     SINRDA LARVATEKRL+LIKAWEESEKS+ ENRAHKKLS IG
Sbjct: 63  VEKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIG 122

Query: 122 SWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLK 181
           SWE+SKKAAVEAELKQIEEK EKKK EY+EKMKNKIALIHK AEEKKAVIEAKRGEEKLK
Sbjct: 123 SWENSKKAAVEAELKQIEEKLEKKKGEYIEKMKNKIALIHKTAEEKKAVIEAKRGEEKLK 182

Query: 182 AEEIAAKYRATGTAPKKILGCF 198
           AEEIAAK+RATGTAPKKI GCF
Sbjct: 183 AEEIAAKHRATGTAPKKIFGCF 200

[Close]

BLAST of CmoCh18G012680 vs. TAIR 10
Match: AT5G23750.1 (Remorin family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-48
Identity = 124/205 (60.49%), Postives = 158/205 (77.07%), Query Frame = 0


Query: 1   MADDEPKRLDSEPPSESSP-PQVAELVEEP--TKNVAEEKSIIQLTP--PEKTPA----D 60
           MA++EPK++ +E  SE +P P+V   VE+P    +VA ++  +   P  P   PA    +
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEVP--VEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQE 60

Query: 61  DSKPLLIIEKTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKL 120
           DSK ++ +   E + EEK+  S+NRDA LARV TEKR++LIKAWEE+EK + EN+A KKL
Sbjct: 61  DSKAIVPVVPKEVE-EEKKEGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKL 120

Query: 121 SEIGSWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGE 180
           S IGSWE++KKAAVEAELK++EE+ EKKKAEYVE+MKNKIA IHK AEEK+A+IEAKRGE
Sbjct: 121 SSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGE 180

Query: 181 EKLKAEEIAAKYRATGTAPKKILGC 197
           E LKAEE+AAKYRATGTAPKK+ GC
Sbjct: 181 EILKAEELAAKYRATGTAPKKLFGC 201

[Close]

BLAST of CmoCh18G012680 vs. TAIR 10
Match: AT5G23750.2 (Remorin family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-48
Identity = 125/206 (60.68%), Postives = 159/206 (77.18%), Query Frame = 0


Query: 1   MADDEPKRLDSEPPSESSP-PQVAELVEEP--TKNVAEEKSIIQLTP--PEKTPA----D 60
           MA++EPK++ +E  SE +P P+V   VE+P    +VA ++  +   P  P   PA    +
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEVP--VEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQE 60

Query: 61  DSKPLL-IIEKTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKK 120
           DSK ++ ++ K E   EEK+  S+NRDA LARV TEKR++LIKAWEE+EK + EN+A KK
Sbjct: 61  DSKAIVPVVPKVE---EEKKEGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKK 120

Query: 121 LSEIGSWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRG 180
           LS IGSWE++KKAAVEAELK++EE+ EKKKAEYVE+MKNKIA IHK AEEK+A+IEAKRG
Sbjct: 121 LSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRG 180

Query: 181 EEKLKAEEIAAKYRATGTAPKKILGC 197
           EE LKAEE+AAKYRATGTAPKK+ GC
Sbjct: 181 EEILKAEELAAKYRATGTAPKKLFGC 200

[Close]

BLAST of CmoCh18G012680 vs. TAIR 10
Match: AT3G61260.1 (Remorin family protein )

HSP 1 Score: 174.5 bits (441), Expect = 8.5e-44
Identity = 108/194 (55.67%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 6   PKRLDSEPPSESSPPQVAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIIEK--TE 65
           P    +  P+E   P  A    + TK+VAEEK  IQ  PPE+   DDSK L ++EK   E
Sbjct: 22  PADTPAPAPAEIPAPAPAPTPADVTKDVAEEK--IQNPPPEQI-FDDSKALTVVEKPVEE 81

Query: 66  AKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESSKKA 125
               +  S+S++RD +LA ++ EKRL+ ++AWEESEKS+ EN+A KK++++ +WE+SKKA
Sbjct: 82  PAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKA 141

Query: 126 AVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIAAKY 185
           AVEA+LK+IEE+ EKKKAEY E+MKNK+A IHK AEE++A+IEAKRGE+ LKAEE AAKY
Sbjct: 142 AVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKY 201

Query: 186 RATGTAPKKILGCF 198
           RATG  PK   GCF
Sbjct: 202 RATGIVPKATCGCF 212

[Close]

BLAST of CmoCh18G012680 vs. TAIR 10
Match: AT3G48940.1 (Remorin family protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-43
Identity = 99/173 (57.23%), Postives = 133/173 (76.88%), Query Frame = 0


Query: 26  VEEPTKNVAEEKSIIQLTPPEK-TPADDSKPLLIIEKTEAKTEEKQSSSINRDAELARVA 85
           +EE  K +  E    + +PP K   +DDSK ++++   +  TE+K+  S++RDA L R+ 
Sbjct: 3   LEEQKKVIMPEAVASEPSPPSKEEKSDDSKAIVLVVAAKEPTEDKKVGSVHRDAVLVRLE 62

Query: 86  TEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESSKKAAVEAELKQIEEKFEKKKAEYV 145
            +KR++LIKAWEE+EKS+ EN+A KK+S +G+WE+SKKA+VEAELK+IEE+  KKKA Y 
Sbjct: 63  QDKRISLIKAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYT 122

Query: 146 EKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIAAKYRATGTAPKKILGCF 198
           E+MKNKIA IHK AEEK+A+ EAKRGE+ LKAEE+AAKYRATGTAP K+ G F
Sbjct: 123 EQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

[Close]

BLAST of CmoCh18G012680 vs. TAIR 10
Match: AT2G45820.1 (Remorin family protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 107/200 (53.50%), Postives = 139/200 (69.50%), Query Frame = 0


Query: 3   DDEPKRLDSEPPSESSPPQVAELVEEPTK---NVAEEKSIIQLTPPEKTPADDSKPLLII 62
           + +  ++D E P+  +P       +EPT     VA+EK  I   PP      +SK L ++
Sbjct: 4   EQKTSKVDVESPAVLAP------AKEPTPAPVEVADEK--IHNPPPV-----ESKALAVV 63

Query: 63  EK-TEAKTEEKQSS-SINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSW 122
           EK  E  T +K SS S +RD  LA +  EK+ + IKAWEESEKS+ ENRA KK+S++ +W
Sbjct: 64  EKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAW 123

Query: 123 ESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAE 182
           E+SKKAAVEA+L++IEEK EKKKA+Y EKMKNK+A IHK AEEK+A++EAK+GEE LKAE
Sbjct: 124 ENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAE 183

Query: 183 EIAAKYRATGTAPKKILGCF 198
           E+ AKYRATG  PK   GCF
Sbjct: 184 EMGAKYRATGVVPKATCGCF 190

The following BLAST results are available for this feature:

BLAST of CmoCh18G012680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93788	2.0e-50	62.38	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
Q9FFA5	4.7e-47	60.49	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1	[more]
Q9M2D8	1.2e-42	55.67	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P...	[more]
O80837	1.5e-37	53.50	Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1	[more]
Q7XII4	1.3e-07	35.34	Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1	[more]

BLAST of CmoCh18G012680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ79	3.5e-93	100.00	remorin OS=Cucurbita moschata OX=3662 GN=LOC111449242 PE=3 SV=1	[more]
A0A6J1HZY5	7.2e-91	97.46	remorin-like OS=Cucurbita maxima OX=3661 GN=LOC111467746 PE=3 SV=1	[more]
A0A0A0L9S3	1.5e-64	76.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182080 PE=3 SV=1	[more]
A0A1S3AXW2	1.3e-63	76.73	remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=3 SV=1	[more]
A0A5A7SRU5	6.4e-63	76.24	Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00800 PE=3 S...	[more]

BLAST of CmoCh18G012680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23750.1	3.3e-48	60.49	Remorin family protein	[more]
AT5G23750.2	3.3e-48	60.68	Remorin family protein	[more]
AT3G61260.1	8.5e-44	55.67	Remorin family protein	[more]
AT3G48940.1	1.9e-43	57.23	Remorin family protein	[more]
AT2G45820.1	1.1e-38	53.50	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR31775	OS02G0117200 PROTEIN	coord: 1..197
None	No IPR available	PANTHER	PTHR31775:SF5	REMORIN 1.4	coord: 1..197
IPR005518	Remorin, N-terminal	PFAM	PF03766	Remorin_N	coord: 31..83 e-value: 1.3E-14 score: 54.0
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 87..192 e-value: 2.4E-30 score: 104.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G012680.1	CmoCh18G012680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress