CmoCh18G012060 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGGCTGCTGCTTGATTTATCGAACAACTTTCTCGTGAACCAGTGAACCACCACCGCGGTTCTTGTTTCTTCTCCGTCTTTTACCAACCCCCAATTCGATGTAACATATAAATGAAGCCTCCACCAATTACCTTCCCCGCGCCCGAGATTGCCCCTTCAACGTAAGGTTATCTCATTGCTGCGTTTAATTAATGTGGTTTGCATTTCCCACTGGTTTTGTTCGGTTGCTTCGAGAACTGTGTCGAGCCCTTCTTTGTTCTGTCGCCTACTTTTTCTCTTCTCCTTGCGCTCCAGGTGTTCGACGAAATGCCTGAGCCATGCTCCTTTTCACCAACGTATTACCCACTTCTTATTTCTTCCCCACACCGTTTGGATGTTTGAGCCCTGGCGTTTTTCCCTCCATTGTCTTCGTTTCGAGATGCGGCGGGATGGCTGCGACAGAGAGGAGGTGTTCGCTCTTGTCTTCAAAGGGTATGTTTTATGGTTGTTCTGGGTTTGTAAGGAGGTGCAAAGATTTGGATAGGGAAGGGAATTTTGCATTGGAGGCAGAGATATTGGAGTTTATGGAAAGTTCAAGAAACCCAGAAGCGTTTCCGAGCAAGAAAGACTTGATTGAGGCCGGCAGGGAGGATTTAGTGGATGCTATAGTCAAGAAAGGTGGTTGGCTTTGTCTCGGATGGAATTTGAACGACGAAGAAGATGGGGGTATTGAACAGCTCTATCTCGAGGATCGGGAATCTATCTTGGCCACTCATTGGGATAGTTTTGGTGAATTCAATAGTTTCAAGAGTGATGAAAGACAAAGATTTGCTACAGATGTTTCTCCCATTGCTTCTTCTTCGACATCATCTTCCTTCACCAGCCGATCACAGTGAGGATTCCATTATGACATCTTAGTTTATTTCTGCTTCATTTGAAATCACTACTTATAAAAATAACTATTTCCGAATAACGTGCGTGAAAAGGCCATTGGCTTGAAATTTGTTCCTAGCAATCTTCAGGGTGTGTTACAGCATGCCAATGAAAGGAACCCTGAATTTTTACGACAACAAGATGTTGTGTCAGGATGTGAACGACACAAACTTTACTAACAGGTTCATTTAACATGGTTGCCAACGAGCCATCAACCTTAATGTCATTGTCTCATGGAGAAAATTTTAGATGTTTTCTTCATGTTTGAGAAAATGAAGCAAAATAACTTCAAATTTGGGTACCTTAATAATCATTTTAACTGCAGAACATTAATCGAGCTTTCCTCGTTGTGTCATGTTTTGGCTGCTATCAACAATATTTGCAATGGTGATTAGTCTACATGCTTTCATTTTCACAGAGAAACTGTTGTTGAGCACGAGTCTGGGATTGAGGGTATGCTGAATCGATTGGAAAGAGAAAGAAATGTGACGTTCGGGACTGGTAAAAATTGTTTGCATCCTGAAACAACAGTAAAGGAGGTAAGGATGCTCCGGTAATTCAATAAACTGAGTTTTCCAATCTGGGCTAGGTTGTTGTCCGTGTTTAAAGTGTAATTAGAGATTGATTAGAACAGTTTTCATTTCCATAATTCCTGTAGATATAATTTCTCTCATATTAGTAAGTACTCGTTCAAGTAATTTCTTCTGTCTCGAAGATAATTATCGTTAGACTAACCAAGGTAAAAGATATACCTTTGAATTTGATGCAGGATGTCTTTCCCATTGGGTTGTCATAATTAGCCGTGCTTGTGCTATGATTTATTTTTCATTTTTCAACTTTGAAATCGTTACATGTATAATTCTCTTGTAAGAATTGTAAAAGGATGAAACTTGTGTTGCTTCTTGCATGGTAAAAGACAGTTGCTGACCTACAAGAAATCCCTATCAGCACGCCACTGAGTGCCAAAGAAGGCAAGTGGAACAATTTGGGGAGTTATCTTAGTAAGAATTCTTCTCCTGTACAAATTAATGGTCAAGGAGGCTCGGTTAGTTCTGAGGTGCAGGGAACTTGGAGCACATTCAAGACAGACCTTCCAGACGGAGATTTTAAAGGTTTTTCATTTATTCAAGGGTTGCTTTGGGATATAAGAGTTCACATTGACCGACTTTTTATATGTACAGGTTCAGAAATGGCTTTGAGCGAGGGAAGGAGCAGGGAAGTATTGGATGTCCTGAGATATGAAACATTAGGATCTAGAGGGGATCCTACCAATTCTAACTCTGGCGAGGAAGAAATGAGTCACAATCAAATACAACGTCACATTCAGAACTTGCAGTTGGAGCTCTCATCCGTAATCGGCTCATTGAGATCTAATTCATTTGCGTCTGAGAAGGTTTAGTCTGCAACTTGATTTTGTTGTCAAATGAACTGTGACGATCTGCATGTCTTTGATTGAAATGGATGAAATTGATTTATTTCATTTCCTATCATGGAACTGGAGAAGGATCTGAATAAAGTAAAAGATGCTAACTAGTCTAATAGTGTTGATAAAAACGATGAATATCTCTTTGATTGTTGGGCAATAATGTTAAATACGTTAAAATATTGAACCTGCATGTTTATGGTGCTATCATGATCATTAGGGTCAAAGTAAATCTTCTGATGATTTGCTGGAGCTTTCGGATGCTTTTGAGTTTCAAGAAAATGAGATCCTAAATGCCAAGGACAAGCTACGGTCTATACGGGCAAAGATAGCCGTGGTCGAAGGGAAGATGGCACTGACAATTATGTATGGGAAACTTGTGCTTTGCGTAGTGATTTGTTCTATCTATAGAGTATCAATGACTTTCTGTCTTTACAGTGATGCACAAAAGGTGGTAGAAGAGAAACAAAAGAGGATCAATTGTGCCCGCAGAGCTTTGCAATTTCTTCGCACTGCCTGCGTGGTCTGGCCTAATTCTGCAGCAGAGGTTCTCTTAGTAGGATCATTTGATGGTTGGTCAACCCAGGTAAAAAAATTCTTCCTATTTGATTACTTTGCTTGCTTTGATGGTTGAAATACTTGGGGAGGACATGGATTGGTTTCTGTCTATTTCCTATAGAATGTACTGCTTGCTTGCCTGCCTATTGATTGGGGAGGAGAGCAAAAATTCTTTATAAGGACGTGGAAATCTCTCCCCAGCAGACATGTTTTAAAAACCTTGAGGGGAGCCCCGAGAGGGAAAACCCAAAGAGAACAATATCTGCTATTAGTGGGCTTAGGCTTAGGCTGTTACAATTACACTGTAGGTATCATTACGTCAACAGCCTGCATTTTCTAATAGTTAGATGCTACACAAGTTCGATAGTAGGAACAGTAGTATGAAGTGTTGTTAAGGATGTTCATCTGCAAATCGCATTACTGAATAACTCTACAGTTTTATGAGGTTTTATTCATTCATCTCTTGTAGTCTTACTCATATTTAACAACAGCTTATTCTCATTCTGCAGAGGAAGATGGAAAGGTCCAGTACAGGCGTTTTCTCTTTGTTCCTGAAGCTGTATCCTGGAAAATACGAGGTTGGTTGTTCTTTGGAGGTTCTATTCACATAATTCATGCTTTTGAACCATAATCTTACAGTTTTCCATGATATTCAGATAAAATTCATTGTTGATGGCCAGTGGAAGATTGATCCGTTACGCCCAATTGTTCGCAGCGATGGATACGAGAATAATCTACTGATCGTCACGTAGCACACCAGGCTGTTTATATTCTTTTTCTTGCCTAGCCCGAAGAGCCGGGTGCCTCAACTACCCCTTCTTTTGTAGCGTTTTCGTACGAATTATACATGTATTTCTTTCTACTTCCGACATCCAGTTTAGGTTTCTTCCTGTCTCCCCCACGTATTTGCATTTCTCGCTGATGTAA AAGGCTGCTGCTTGATTTATCGAACAACTTTCTCGTGAACCAGTGAACCACCACCGCGGTTCTTGTTTCTTCTCCGTCTTTTACCAACCCCCAATTCGATGTAACATATAAATGAAGCCTCCACCAATTACCTTCCCCGCGCCCGAGATTGCCCCTTCAACGTAAGGTTATCTCATTGCTGCGTTTAATTAATGTGGTTTGCATTTCCCACTGGTTTTGTTCGGTTGCTTCGAGAACTGTGTCGAGCCCTTCTTTGTTCTGTCGCCTACTTTTTCTCTTCTCCTTGCGCTCCAGGTGTTCGACGAAATGCCTGAGCCATGCTCCTTTTCACCAACGTATTACCCACTTCTTATTTCTTCCCCACACCGTTTGGATGTTTGAGCCCTGGCGTTTTTCCCTCCATTGTCTTCGTTTCGAGATGCGGCGGGATGGCTGCGACAGAGAGGAGGTGTTCGCTCTTGTCTTCAAAGGGTATGTTTTATGGTTGTTCTGGGTTTGTAAGGAGGTGCAAAGATTTGGATAGGGAAGGGAATTTTGCATTGGAGGCAGAGATATTGGAGTTTATGGAAAGTTCAAGAAACCCAGAAGCGTTTCCGAGCAAGAAAGACTTGATTGAGGCCGGCAGGGAGGATTTAGTGGATGCTATAGTCAAGAAAGGTGGTTGGCTTTGTCTCGGATGGAATTTGAACGACGAAGAAGATGGGGGTATTGAACAGCTCTATCTCGAGGATCGGGAATCTATCTTGGCCACTCATTGGGATAGTTTTGGTGAATTCAATAGTTTCAAGAGTGATGAAAGACAAAGATTTGCTACAGATGTTTCTCCCATTGCTTCTTCTTCGACATCATCTTCCTTCACCAGCCGATCACAAGAAACTGTTGTTGAGCACGAGTCTGGGATTGAGGGTATGCTGAATCGATTGGAAAGAGAAAGAAATGTGACGTTCGGGACTGGTAAAAATTGTTTGCATCCTGAAACAACAGTAAAGGAGACAGTTGCTGACCTACAAGAAATCCCTATCAGCACGCCACTGAGTGCCAAAGAAGGCAAGTGGAACAATTTGGGGAGTTATCTTAGTAAGAATTCTTCTCCTGTACAAATTAATGGTCAAGGAGGCTCGGTTAGTTCTGAGGTGCAGGGAACTTGGAGCACATTCAAGACAGACCTTCCAGACGGAGATTTTAAAGGTTCAGAAATGGCTTTGAGCGAGGGAAGGAGCAGGGAAGTATTGGATGTCCTGAGATATGAAACATTAGGATCTAGAGGGGATCCTACCAATTCTAACTCTGGCGAGGAAGAAATGAGTCACAATCAAATACAACGTCACATTCAGAACTTGCAGTTGGAGCTCTCATCCGTAATCGGCTCATTGAGATCTAATTCATTTGCGTCTGAGAAGGGTCAAAGTAAATCTTCTGATGATTTGCTGGAGCTTTCGGATGCTTTTGAGTTTCAAGAAAATGAGATCCTAAATGCCAAGGACAAGCTACGGTCTATACGGGCAAAGATAGCCGTGGTCGAAGGGAAGATGGCACTGACAATTATTGATGCACAAAAGGTGGTAGAAGAGAAACAAAAGAGGATCAATTGTGCCCGCAGAGCTTTGCAATTTCTTCGCACTGCCTGCGTGGTCTGGCCTAATTCTGCAGCAGAGGTTCTCTTAGTAGGATCATTTGATGGTTGGTCAACCCAGAGGAAGATGGAAAGGTCCAGTACAGGCGTTTTCTCTTTGTTCCTGAAGCTGTATCCTGGAAAATACGAGATAAAATTCATTGTTGATGGCCAGTGGAAGATTGATCCGTTACGCCCAATTGTTCGCAGCGATGGATACGAGAATAATCTACTGATCGTCACCGTTTTCGTACGAATTATACATGTATTTCTTTCTACTTCCGACATCCAGTTTAGGTTTCTTCCTGTCTCCCCCACGTATTTGCATTTCTCGCTGATGTAA ATGCTCCTTTTCACCAACGTATTACCCACTTCTTATTTCTTCCCCACACCGTTTGGATGTTTGAGCCCTGGCGTTTTTCCCTCCATTGTCTTCGTTTCGAGATGCGGCGGGATGGCTGCGACAGAGAGGAGGTGTTCGCTCTTGTCTTCAAAGGGTATGTTTTATGGTTGTTCTGGGTTTGTAAGGAGGTGCAAAGATTTGGATAGGGAAGGGAATTTTGCATTGGAGGCAGAGATATTGGAGTTTATGGAAAGTTCAAGAAACCCAGAAGCGTTTCCGAGCAAGAAAGACTTGATTGAGGCCGGCAGGGAGGATTTAGTGGATGCTATAGTCAAGAAAGGTGGTTGGCTTTGTCTCGGATGGAATTTGAACGACGAAGAAGATGGGGGTATTGAACAGCTCTATCTCGAGGATCGGGAATCTATCTTGGCCACTCATTGGGATAGTTTTGGTGAATTCAATAGTTTCAAGAGTGATGAAAGACAAAGATTTGCTACAGATGTTTCTCCCATTGCTTCTTCTTCGACATCATCTTCCTTCACCAGCCGATCACAAGAAACTGTTGTTGAGCACGAGTCTGGGATTGAGGGTATGCTGAATCGATTGGAAAGAGAAAGAAATGTGACGTTCGGGACTGGTAAAAATTGTTTGCATCCTGAAACAACAGTAAAGGAGACAGTTGCTGACCTACAAGAAATCCCTATCAGCACGCCACTGAGTGCCAAAGAAGGCAAGTGGAACAATTTGGGGAGTTATCTTAGTAAGAATTCTTCTCCTGTACAAATTAATGGTCAAGGAGGCTCGGTTAGTTCTGAGGTGCAGGGAACTTGGAGCACATTCAAGACAGACCTTCCAGACGGAGATTTTAAAGGTTCAGAAATGGCTTTGAGCGAGGGAAGGAGCAGGGAAGTATTGGATGTCCTGAGATATGAAACATTAGGATCTAGAGGGGATCCTACCAATTCTAACTCTGGCGAGGAAGAAATGAGTCACAATCAAATACAACGTCACATTCAGAACTTGCAGTTGGAGCTCTCATCCGTAATCGGCTCATTGAGATCTAATTCATTTGCGTCTGAGAAGGGTCAAAGTAAATCTTCTGATGATTTGCTGGAGCTTTCGGATGCTTTTGAGTTTCAAGAAAATGAGATCCTAAATGCCAAGGACAAGCTACGGTCTATACGGGCAAAGATAGCCGTGGTCGAAGGGAAGATGGCACTGACAATTATTGATGCACAAAAGGTGGTAGAAGAGAAACAAAAGAGGATCAATTGTGCCCGCAGAGCTTTGCAATTTCTTCGCACTGCCTGCGTGGTCTGGCCTAATTCTGCAGCAGAGGTTCTCTTAGTAGGATCATTTGATGGTTGGTCAACCCAGAGGAAGATGGAAAGGTCCAGTACAGGCGTTTTCTCTTTGTTCCTGAAGCTGTATCCTGGAAAATACGAGATAAAATTCATTGTTGATGGCCAGTGGAAGATTGATCCGTTACGCCCAATTGTTCGCAGCGATGGATACGAGAATAATCTACTGATCGTCACCGTTTTCGTACGAATTATACATGTATTTCTTTCTACTTCCGACATCCAGTTTAGGTTTCTTCCTGTCTCCCCCACGTATTTGCATTTCTCGCTGATGTAA MLLFTNVLPTSYFFPTPFGCLSPGVFPSIVFVSRCGGMAATERRCSLLSSKGMFYGCSGFVRRCKDLDREGNFALEAEILEFMESSRNPEAFPSKKDLIEAGREDLVDAIVKKGGWLCLGWNLNDEEDGGIEQLYLEDRESILATHWDSFGEFNSFKSDERQRFATDVSPIASSSTSSSFTSRSQETVVEHESGIEGMLNRLERERNVTFGTGKNCLHPETTVKETVADLQEIPISTPLSAKEGKWNNLGSYLSKNSSPVQINGQGGSVSSEVQGTWSTFKTDLPDGDFKGSEMALSEGRSREVLDVLRYETLGSRGDPTNSNSGEEEMSHNQIQRHIQNLQLELSSVIGSLRSNSFASEKGQSKSSDDLLELSDAFEFQENEILNAKDKLRSIRAKIAVVEGKMALTIIDAQKVVEEKQKRINCARRALQFLRTACVVWPNSAAEVLLVGSFDGWSTQRKMERSSTGVFSLFLKLYPGKYEIKFIVDGQWKIDPLRPIVRSDGYENNLLIVTVFVRIIHVFLSTSDIQFRFLPVSPTYLHFSLM Homology
BLAST of CmoCh18G012060 vs. ExPASy Swiss-Prot
Match: Q9LFY0 (Protein PTST homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTST2 PE=1 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 3.3e-90 Identity = 206/476 (43.28%), Postives = 293/476 (61.55%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy Swiss-Prot
Match: Q10F03 (Protein FLOURY ENDOSPERM 6, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=FLO6 PE=1 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 1.1e-64 Identity = 170/467 (36.40%), Postives = 258/467 (55.25%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy Swiss-Prot
Match: F4KFB3 (Protein PTST homolog 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTST PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 4.7e-12 Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy Swiss-Prot
Match: Q94AX2 (Protein PTST, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTST PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 5.2e-11 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy Swiss-Prot
Match: Q6PAM0 (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab2 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 7.0e-08 Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy TrEMBL
Match: A0A6J1FZM9 (protein PTST homolog 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449347 PE=4 SV=1) HSP 1 Score: 1010.4 bits (2611), Expect = 2.9e-291 Identity = 513/513 (100.00%), Postives = 513/513 (100.00%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy TrEMBL
Match: A0A6J1FZI9 (protein PTST homolog 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449347 PE=4 SV=1) HSP 1 Score: 994.2 bits (2569), Expect = 2.2e-286 Identity = 513/544 (94.30%), Postives = 513/544 (94.30%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy TrEMBL
Match: A0A6J1HXH5 (protein PTST homolog 2, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467545 PE=4 SV=1) HSP 1 Score: 958.0 bits (2475), Expect = 1.7e-275 Identity = 493/517 (95.36%), Postives = 495/517 (95.74%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy TrEMBL
Match: A0A6J1HT44 (protein PTST homolog 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467545 PE=4 SV=1) HSP 1 Score: 941.8 bits (2433), Expect = 1.3e-270 Identity = 493/548 (89.96%), Postives = 495/548 (90.33%), Query Frame = 0
BLAST of CmoCh18G012060 vs. ExPASy TrEMBL
Match: A0A6J1DCK2 (uncharacterized protein LOC111019111 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019111 PE=4 SV=1) HSP 1 Score: 762.7 bits (1968), Expect = 1.1e-216 Identity = 398/519 (76.69%), Postives = 439/519 (84.59%), Query Frame = 0
BLAST of CmoCh18G012060 vs. TAIR 10
Match: AT1G27070.1 (5'-AMP-activated protein kinase-related ) HSP 1 Score: 334.0 bits (855), Expect = 2.3e-91 Identity = 206/476 (43.28%), Postives = 293/476 (61.55%), Query Frame = 0
BLAST of CmoCh18G012060 vs. TAIR 10
Match: AT5G03420.1 (5'-AMP-activated protein kinase-related ) HSP 1 Score: 74.3 bits (181), Expect = 3.3e-13 Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 0
BLAST of CmoCh18G012060 vs. TAIR 10
Match: AT5G39790.1 (5'-AMP-activated protein kinase-related ) HSP 1 Score: 70.9 bits (172), Expect = 3.7e-12 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 0
BLAST of CmoCh18G012060 vs. TAIR 10
Match: AT4G16360.1 (5'-AMP-activated protein kinase beta-2 subunit protein ) HSP 1 Score: 58.9 bits (141), Expect = 1.4e-08 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
BLAST of CmoCh18G012060 vs. TAIR 10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein ) HSP 1 Score: 58.9 bits (141), Expect = 1.4e-08 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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