CmoCh18G011380 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G011380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Leucine-rich repeat receptor-like protein kinase
Location	Cmo_Chr18: 11662129 .. 11664225 (+)
RNA-Seq Expression	CmoCh18G011380
Synteny	CmoCh18G011380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGAGTCTCTGTTTGAGGCGCGCAAGTTTTCATAATCGTTTCTCCACGCAGATCTATCAAACCAGCATCGATTTCATCTCTGCATTTTCAAATTCCTTTAACTTCTCGGAGTTAAGGAACTCACAAATCTGAAATAACGGCGCGGCGACTTTCACTGCCCGCGTTTTCTGTATTCCTGATCTTGTTCTCTCTGCTCAACGATTCTGTTCTCTGTAAAACACTTAAACGAGATGGTATTGATGACATTATTACCTTTTCTTGTGATTTTTTTTTTTTCTATGGGTTTCAAGGGACTGAATATTTTGTGTTTTTGCAGTTAAAGCATTGAATGAGATCAAGGCTTCTCTTGGCTGGAGAGTGGTGTATTCATGGGTTGGAGATGATCCGTGTGGCGATGGTGATCTTCCTGCTTGGTCCGGTGTCACTTGTTCTACTCAAGGAGATTACAGAGAGGTTACTAAATTGTATGATTGGCTCTTAGTTTGTTGAATTGATCATAATTATTAGCAACTCGCCCTGTTGTTCGTTGATTGGTTTATCATTTATTGTTCTATTCTCGTTAAACTCATTGTTGTAAATTTGGTACTGTCCGTATGATGCGTTAAACTGGGTTAATTTGTTGCCTACTGTAGGGAAGTTTATGAGGTTTCTATTGTCGGACCGTTTCCCACTGCTGTTACTAATCTCTTGGATCTTACTAGGCTGTAAGTATTTCCTTCCCAAAATGTATTTGATAATTTTGTTTCTTCGTGCAATACTATGTGTAAATTGTCATAAGTTTTTTATTTAATTTAGTCATTAACTCTCGTCCATTTATAACGATTGATTAAATAAGACGTTTGATGATCCAAATAATTGTCCCTATATAATGGGCTTATCTAGGAGGTTGATGATATCGGAATTTAATATCGGGATTTGGGACAGTTTTGTGTGTCACATTGTATTTCTTGAGTGACATTGGTGAGAGTTTTTGTAGTGTGATAGTGAGGTATTCACTTGTAACACTTTGTTTATTAGTGATGGGTTGCTACCCGTAGATGTAGGGGAACTTCTTCTCTCCGAACCACATAAATATCTTGGTATCTCTTTATGTAATTCTGTTCATTGGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAACAAGAAGTTTCTATATCCTTATAAGGAGTGTTTCGTTTCCCTATCCAACCAATGTAGGATCTCACAATCTACCCCCTTAAGAGTCCAGGGTCCTCGCTGGCACACCGCCCAAAACTTGGCTTTGGTACCATTTGTAACAACCCAAGACCACCGCTAGCAAATATTGTCCTCTTTGGACTTTCCCTTCTAGGGCTTTCTCTCAAGGTTTTAAAACGTGTCTGCTAGGGTAAGGTTTCCACACCCTTATAAGAAATGTTGCATTCTCCTTCCCAACTAATGTGAGATCTCACACTCCCACCCAACGCCCAAGTCTCCTCTCTAAAAAATGGAGAAAACTGCTGTTCAAAGTTGCCAGTGTTTTTCTTCCTGCTTAAACACTACGAACGTCATTTCATGCTTTGTAGAGGCAAATATGTTTTGTATGACATTCCTTAGCTAAAACACAATACACCTAACATTATATTTTTCAAGCCTGTTTGTAACGTGGTTCCATGTCTTTTCACATTTCATGCTATCTTGACCAACACCTGCACTTTCTGCCTTCCTCTTACTCTACATAGGAAAAATCATCAGTCTTATGCTCTGCATTATCCTTTGCAACTGGCAAGCTCCTTTGCTTGTCAAGATATTCATAAAATAGGACTTTTGTTCACACACAGGTTCTTGGACTACAACCAATTTAGTGGGAGAATTCCAGATGATTTTTACAAACATCCATTATTGAAAGAGATGTGAGTTATTTCTTCTTAGTTCTCGTGTCATTATCACTTGATTAAGTAGTAACTGAAGCCTGATCTTTGGTTTATTTCACATATATAATCGATAGGTTCATCGAGGGTAATGCCTTTAGGCAACAAGTGAAGCCAATAAGCATTCACAAAGCTCTTGAAGTTTCAGACGCAGAATTCCTCGTTTAA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGAGTCTCTGTTTGAGGCGCGCAAGTTTTCATAATCGTTTCTCCACGCAGATCTATCAAACCAGCATCGATTTCATCTCTGCATTTTCAAATTCCTTTAACTTCTCGGAGTTAAGGAACTCACAAATCTGAAATAACGGCGCGGCGACTTTCACTGCCCGCGTTTTCTGTATTCCTGATCTTGTTCTCTCTGCTCAACGATTCTGTTCTCTGTAAAACACTTAAACGAGATGTTAAAGCATTGAATGAGATCAAGGCTTCTCTTGGCTGGAGAGTGGTGTATTCATGGGTTGGAGATGATCCGTGTGGCGATGGTGATCTTCCTGCTTGGTCCGGTGTCACTTGTTCTACTCAAGGAGATTACAGAGAGGGAAGTTTATGAGGTTTCTATTGTCGGACCGTTTCCCACTGCTGTTACTAATCTCTTGGATCTTACTAGGCTGTTCTTGGACTACAACCAATTTAGTGGGAGAATTCCAGATGATTTTTACAAACATCCATTATTGAAAGAGATGTTCATCGAGGGTAATGCCTTTAGGCAACAAGTGAAGCCAATAAGCATTCACAAAGCTCTTGAAGTTTCAGACGCAGAATTCCTCGTTTAA

Coding sequence (CDS)

ATGAGATCAAGGCTTCTCTTGGCTGGAGAGTGGTGTATTCATGGGTTGGAGATGATCCGTGTGGCGATGGTGATCTTCCTGCTTGGTCCGGTGTCACTTGTTCTACTCAAGGAGATTACAGAGAGGGAAGTTTATGAGGTTTCTATTGTCGGACCGTTTCCCACTGCTGTTACTAATCTCTTGGATCTTACTAGGCTGTTCTTGGACTACAACCAATTTAGTGGGAGAATTCCAGATGATTTTTACAAACATCCATTATTGAAAGAGATGTTCATCGAGGGTAATGCCTTTAGGCAACAAGTGAAGCCAATAAGCATTCACAAAGCTCTTGAAGTTTCAGACGCAGAATTCCTCGTTTAA

Protein sequence

MRSRLLLAGEWCIHGLEMIRVAMVIFLLGPVSLVLLKEITEREVYEVSIVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFIEGNAFRQQVKPISIHKALEVSDAEFLV

Homology

[Close]

BLAST of CmoCh18G011380 vs. ExPASy Swiss-Prot
Match: Q9FMD7 (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana OX=3702 GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 39  ITEREVYEVSIVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFIEGNAFR 98
           +T   +  V + GP P A+ NL  L  L   +N  +G +P DF    LL+ ++++GNAF 
Sbjct: 65  VTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFS 124

Query: 99  QQV 102
            ++
Sbjct: 125 GEI 127

[Close]

BLAST of CmoCh18G011380 vs. ExPASy TrEMBL
Match: A0A6J1HXP1 (uncharacterized protein LOC111467583 OS=Cucurbita maxima OX=3661 GN=LOC111467583 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.4e-34
Identity = 84/106 (79.25%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 17  EMIRVAMVIFLLGPVSLVLLKEITE---REVYEVSIVGPFPTAVTNLLDLTRLFLDYNQF 76
           EMIRVAMVIFLLG VSLVLLKEITE     +    +   FPTAVTNLLDLT LFLDYNQF
Sbjct: 54  EMIRVAMVIFLLGLVSLVLLKEITEWLLNCMIGYCLYDAFPTAVTNLLDLTTLFLDYNQF 113

Query: 77  SGRIPDDFYKHPLLKEMFIEGNAFRQQVKPISIHKALEVSDAEFLV 120
           SGRIPDDFYKHPLLKEMFI  NA  QQVKPI +HKALEVSDAEFLV
Sbjct: 114 SGRIPDDFYKHPLLKEMFIVSNACWQQVKPIGVHKALEVSDAEFLV 159

[Close]

BLAST of CmoCh18G011380 vs. ExPASy TrEMBL
Match: A0A5A7SYD4 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G004710 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.4e-25
Identity = 102/290 (35.17%), Postives = 104/290 (35.86%), Query Frame = 0


Query: 1   MRSRLLLAGEWCIHGLEMIRVAMVIFLLGPVSLVLLKEITEREVYEVSIVGPFPTAVTNL 60
           MRSRLLLAGEWCI G  MIRVAMVI LLG VSLVLLKEI E EVY VSIVGPFPTAVTNL
Sbjct: 1   MRSRLLLAGEWCILGSVMIRVAMVICLLGLVSLVLLKEIIEWEVYAVSIVGPFPTAVTNL 60

Query: 61  LDLTR------------------------------------------------------- 120
           LDLTR                                                       
Sbjct: 61  LDLTRLDFHNNKLTGPIPPQIGRLKRLQILNLRWNKLQDVIPSEIGELKSLTHLYLSFNN 120

[Close]

BLAST of CmoCh18G011380 vs. ExPASy TrEMBL
Match: A0A2P5VXF4 (LRRNT_2 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A07G077300v1 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.4e-25
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 39  ITEREVYEVSIVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFIEGNAFR 98
           +TE EVY VSI+GPFP A+TNLLDLTRL+LD+NQFSGRIP+  YKHP LKE++I+GN FR
Sbjct: 79  VTELEVYAVSIIGPFPIALTNLLDLTRLYLDHNQFSGRIPNALYKHPFLKELYIDGNGFR 138

Query: 99  QQVKPISIHKALEVSDAEFLV 120
             V PI  HK LE+SD +FLV
Sbjct: 139 PGVDPIGAHKVLELSDTDFLV 159

[Close]

BLAST of CmoCh18G011380 vs. ExPASy TrEMBL
Match: A0A6J1I873 (probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucurbita maxima OX=3661 GN=LOC111471841 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.3e-20
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 36  LKEITEREVYEVS---IVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFI 95
           L  +T  E+  +S   + G  P  V ++  LT L+LD+NQFSGRIPD FYKHP LKEM+I
Sbjct: 244 LANLTNLEILYLSYNKMSGIIPPGVAHISKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYI 303

Query: 96  EGNAFRQQVKPISIHKALEVSDAEFL 119
           EGNAFRQ VKPI IHK LEVSDAEFL
Sbjct: 304 EGNAFRQGVKPIGIHKVLEVSDAEFL 329

[Close]

BLAST of CmoCh18G011380 vs. ExPASy TrEMBL
Match: A0A6J1J9I3 (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Cucurbita maxima OX=3661 GN=LOC111482491 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.9e-20
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 36  LKEITEREVYEVS---IVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFI 95
           L  +T  E+  +S   + G  P  +  +  LT LFLDYNQFSGRI D FYKHPLLKEMFI
Sbjct: 244 LANLTNLEILYLSHNKMSGIIPAELARIPRLTYLFLDYNQFSGRISDGFYKHPLLKEMFI 303

Query: 96  EGNAFRQQVKPISIHKALEVSDAEFLV 120
           EGNAFRQ VKPI  HK LEVSDA+FLV
Sbjct: 304 EGNAFRQGVKPIGFHKVLEVSDADFLV 330

[Close]

BLAST of CmoCh18G011380 vs. TAIR 10
Match: AT5G61240.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-21
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 36  LKEITEREVYEVS---IVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFI 95
           L  +T  E+  +S    +G  P A+ ++  LT L+LD+NQF+GRIPD FYKHP LKEM+I
Sbjct: 240 LSNLTNLEIVYLSYNKFIGNIPFAIAHIPKLTYLYLDHNQFTGRIPDAFYKHPFLKEMYI 299

Query: 96  EGNAFRQQVKPISIHKALEVSDAEFLV 120
           EGN F+  V PI  HK LEVSDA+F V
Sbjct: 300 EGNMFKSGVNPIGTHKVLEVSDADFAV 326

[Close]

BLAST of CmoCh18G011380 vs. TAIR 10
Match: AT5G61240.2 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-21
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 36  LKEITEREVYEVS---IVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFI 95
           L  +T  E+  +S    +G  P A+ ++  LT L+LD+NQF+GRIPD FYKHP LKEM+I
Sbjct: 253 LSNLTNLEIVYLSYNKFIGNIPFAIAHIPKLTYLYLDHNQFTGRIPDAFYKHPFLKEMYI 312

Query: 96  EGNAFRQQVKPISIHKALEVSDAEFLV 120
           EGN F+  V PI  HK LEVSDA+F V
Sbjct: 313 EGNMFKSGVNPIGTHKVLEVSDADFAV 339

[Close]

BLAST of CmoCh18G011380 vs. TAIR 10
Match: AT1G13910.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 88.2 bits (217), Expect = 4.9e-18
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 36  LKEITEREVYEVS---IVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFI 95
           L  +T  E+  +S   + G  P A+ ++  LT L LD+N F+G IP+ FYKHP LK+M+I
Sbjct: 244 LANLTNLEILYLSFNKMTGAIPAALASIPRLTNLHLDHNLFNGSIPEAFYKHPNLKDMYI 303

Query: 96  EGNAFRQQVKPISIHKALEVSDAEFLV 120
           EGNAF+  VK I  HK LE+SD +FLV
Sbjct: 304 EGNAFKSDVKAIGAHKVLELSDTDFLV 330

[Close]

BLAST of CmoCh18G011380 vs. TAIR 10
Match: AT5G16590.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 47.4 bits (111), Expect = 9.5e-06
Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 39  ITEREVYEVSIVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFIEGNAFR 98
           +T   +  V + GP P A+ NL  L  L   +N  +G +P DF    LL+ ++++GNAF 
Sbjct: 65  VTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFS 124

Query: 99  QQV 102
            ++
Sbjct: 125 GEI 127

[Close]

BLAST of CmoCh18G011380 vs. TAIR 10
Match: AT4G16162.3 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-05
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 49  IVGPFPTAVTNLLDLTRLFLDYNQFSGRIPDDFYKHPLLKEMFIEGNAFRQQVK 103
           + GP P  + N++ L RL L+ NQ SG +P +  +   LK +F+  N FR  +K
Sbjct: 62  LTGPIPKEIGNIITLERLVLENNQLSGTLPPELGRLSNLKRLFLSSNKFRVILK 115

The following BLAST results are available for this feature:

BLAST of CmoCh18G011380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMD7	1.3e-04	33.33	Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of CmoCh18G011380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXP1	6.4e-34	79.25	uncharacterized protein LOC111467583 OS=Cucurbita maxima OX=3661 GN=LOC111467583...	[more]
A0A5A7SYD4	2.4e-25	35.17	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]
A0A2P5VXF4	5.4e-25	69.14	LRRNT_2 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A07G0...	[more]
A0A6J1I873	5.3e-20	62.79	probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucurbita...	[more]
A0A6J1J9I3	6.9e-20	63.22	LRR receptor-like serine/threonine-protein kinase GSO1 OS=Cucurbita maxima OX=36...	[more]

BLAST of CmoCh18G011380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61240.1	4.7e-21	54.02	Leucine-rich repeat (LRR) family protein	[more]
AT5G61240.2	4.7e-21	54.02	Leucine-rich repeat (LRR) family protein	[more]
AT1G13910.1	4.9e-18	49.43	Leucine-rich repeat (LRR) family protein	[more]
AT5G16590.1	9.5e-06	33.33	Leucine-rich repeat protein kinase family protein	[more]
AT4G16162.3	3.6e-05	37.04	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 25..117 e-value: 2.4E-8 score: 35.6
None	No IPR available	PANTHER	PTHR48004:SF34	LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN	coord: 39..66 coord: 63..119
None	No IPR available	PANTHER	PTHR48004	OS01G0149700 PROTEIN	coord: 39..66
None	No IPR available	PANTHER	PTHR48004	OS01G0149700 PROTEIN	coord: 63..119
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 46..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G011380.1	CmoCh18G011380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane