CmoCh18G011320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G011320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	H4/H2A histone acetyltransferase complex
Location	Cmo_Chr18: 11633536 .. 11636908 (+)
RNA-Seq Expression	CmoCh18G011320
Synteny	CmoCh18G011320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTTCCCGCGGATCAAACAGCCAAAACCCTAACCAGAAATCACGGGGAAGTTTCTAATTACAAAGTTCGGTTCAATCTGGAGGGAAAACAAGAAAAGAGGAAGAACTAAAACTAGAAACTCCGGCGAAGCATTTCTCTTCGACGAAGAACGTCTATTGCGATTGTTAGTTTCTTCATGGAAAGCGGCGGCAAAGGGAGAGATGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCTCCTCCGTCATCCGCTTCTTCTCTTCCCAAGGTCTCTCTCTCTCTCTCTATTTTCAGACATTGTCTTATGATCGCTGGAATTTGATTTTGTTCTTGTTTTTTGTATGCTGTGGTTAGGAGCAAGCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGTCAAACTGCAAGGCAAGTTTGGTTTAACACTATTCTATCTGGTTCTTAATTGCATGTATTATCAAAACGTGAGTATGTCATTAGTTTTCGAGTCTGTTCGTCCTCAGCATCACGGCAGGAATTCTTGATTTTAATCAACAAGTGAGAATCTAACCTATTGTCTAGTTGTGTGTTCAGTGATAATGATCAACTTCATACTGTTATTATTATTTTGTGTTGTCTGATCAAAAGTGGCATGGAGGACCAGAAATTACGAATGATGTAGCTATTCTTACGGTTGAGAAATGAGTGGAAGAGAGTACCGAGCAAATTAAAGTTGTCTTCCCGGGATGTCATTCAGTTTTTCACTTTAGGCTTTTACCGACTAAGAACAGGGAGGAAATGTTGTGAATTGAATATGCTATAATCAATAAAATCACCATCGAGAACTTAAGCTGTCAATTAGGCTCGCAAGGAAGGAAATAAAACTTTGACGTATTTGCTAATGATACCAGATAATGGCATCTTGTTCATTAGTCTTTTCTTTTCCCTTCTACATACGAGCTTGCCGTCACTGAATTTTCGTTATTTTCATACAGGCATACATCGCCATTTTGTTCTCTTCGGGTTGATGGAGTTTCTAAGAAGAAGGTTTTCTCTGCCCCATGTACCACCTTCTTTCATCTTATTCAGCTTTTGACAATAAAATCTAGTGGCTTCTACAATTTCTTATGCATAATAATTTATTGGTTTACCATCTTCTTGCCACAGCTTTGATCGTCAGTTCTCTTCTGATGAAGTTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGGTAAAAAGAATCACTAACGCCTTGTTTTTTTTTTTTTTGGCTGCTGGCTCAATTTTATTTGAGAAGGAAGATAATCTAAATACATAAATATATAATCTAGAAAATTCACTTTTCTGTCCTTCACTCTTTAGGAAAGAAAATGTAACCGCCCAAGCCCGCCGTTAACAGATATTACCTTCTTTGGGCTTTCACTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGTGTTTGCTGGAGAGAGATTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCTCCAACCGATGCGGGATCTCACAATCCACCCTCCTTCGATGCCTAGTGTCCTCACTGGCATTCGTTCCCTTCTCCAATCGATGTGGAACCCCCTCAATCCTCCCCCTTCGGGGCCTAGCGTCTTTGCTGGCATACTGCCTCGTGTCCATTCCCTTCTGGGCACAGCCTCCTCGCTGGCGCATCGCTTGGTGTCTGGCTCTAATACCATTTGTAACAACCTAAACTCATCGCTAGCCAAATTATCCTCTTTGGGCTTTCCCTTTAAGGTTTTTAAAATGTGTCTACTAAGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCCAACCGACGTGGGATCTCACAAAAAAATTTGCTAATTCCTAATAATCATACATCTTGTGGAGGGCCATGAATTTGTGACATGTTGGGGTACATACTAAGTAGAGCTCTGACCTCACATCTGACCTTATAGACCTCATATTCATTTTCTTTCTAAAGAAGATACTTTTCCAGATTGAGTAGGAAATATGTCTACAGCTTAGTTGACATATTCAAATTTACATTTTGTAGAGTTAGAACCAAATAATGTGGGGGGCAAGTCTTATTTCTTTGCCACTCCTTAAGTCATCTTTTCCTGTCCTCCTGATAACTGATGAGATATATGTGCTAATATTGCTTTCCTCTCCATCACAATGCATTTCAGAAGCCAGACGATGAGGAAATGGAAATTCTGAATCACGAGGAAGATTTCTGCCTACCACAAACCTTCTTTGTCAAAGAAGAGTCTTAAGGGAAATTGTTCATATGGATGGTACCTTAGCCCTTCCTGGCATCTTTCTACTGTCGATCCCTTTTTGTTTTGTAAATGTCAATACAGAATCTTTTGCTGGATAGTATAATAAAAAAATTTCCTTTGTAAAGATGAATTCCTTAGTTTCTATACACCAGGGTCAATATGCTAAGTTCTCTGTTCCGCATGCCATACTTCTATTGAAATGCCCTCCAATCTAGGAGTTCACATTTTCTGTTCTTTTTTCCTTTTTTTTTTTGAGCTGATGCAAGTCTCTTGGTACTGGCCCCTGAAGTGTAATGGTCTAAGCTCACCGCTAGTAGATATTGTTCTCTTTGGGCTTTCTCTTTCGGGCTTCCTTTCAAGGTTTTTAAAATGTGCTTGTTAGGGAGAGGTTTCCAAACCCTTATAAATAATGTTTTGTTCTCCTTTCCAATGTGAAATCTCACAATCCACCTTCTTCGGTGCCCAGCGTCCTTACTGGCACTCGTTCCCTTTTCAATCGATGTGAGATCCCCAATCTACTCCTTTTGGGTCCAGCATCTTTAGACGCTCACACATCTCTCAAGTGTCTGGCTCTGATAAGAAGTCTCTCGACTTAAAATCAAATTTGGAGACTAACTCATTTGAAGACAACTCAACTTTGTTGATGAAGTTGATACTGAGTGAAGGATGATAATTTCCTTGGCAATTTATCCCCATGCAACATAGGAGCCACTGCCCCAATCTACCTGTCAACATCATAGATAGATTCATATAACCACAAACTCATGGACCTAAAAATCCTTCACATGGGCTACCTTAGATTTCTTTGAGAGAAGACAAGAAGACCAGAAGACAAATACAGGTTTCATTCTTTCATGATTTGATGGGTCTTTGTAAAAACTAATCTTTCACAACCAAAAACCCTTAGGACCAGGTGCAGTTGCCCTCATCGACAATTTACACAACCTCTCAAGGGGAAGACCTTTTACGCCGCTCCTTACCGGGCGCTATAAGAATTTTCTGGTGAAGATAATCCCTGAAAGCATACAAGGTATTGGCCCGTTTCACTTGTATAGACACAATAGAAG

mRNA sequence

TCCGTTCCCGCGGATCAAACAGCCAAAACCCTAACCAGAAATCACGGGGAAGTTTCTAATTACAAAGTTCGGTTCAATCTGGAGGGAAAACAAGAAAAGAGGAAGAACTAAAACTAGAAACTCCGGCGAAGCATTTCTCTTCGACGAAGAACGTCTATTGCGATTGTTAGTTTCTTCATGGAAAGCGGCGGCAAAGGGAGAGATGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCTCCTCCGTCATCCGCTTCTTCTCTTCCCAAGGAGCAAGCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGTCAAACTGCAAGGCATACATCGCCATTTTGTTCTCTTCGGGTTGATGGAGTTTCTAAGAAGAAGCTTTGATCGTCAGTTCTCTTCTGATGAAGTTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGAAGCCAGACGATGAGGAAATGGAAATTCTGAATCACGAGGAAGATTTCTGCCTACCACAAACCTTCTTTGTCAAAGAAGAGTCTTAAGGGAAATTGTTCATATGGATGGTACCTTAGCCCTTCCTGGCATCTTTCTACTGTCGATCCCTTTTTGTTTTGTAAATGTCAATACAGAATCTTTTGCTGGATAGTATAATAAAAAAATTTCCTTTGTAAAGATGAATTCCTTAGTTTCTATACACCAGGGTCAATATGCTAAGTTCTCTGTTCCGCATGCCATACTTCTATTGAAATGCCCTCCAATCTAGGAGTTCACATTTTCTGTTCTTTTTTCCTTTTTTTTTTTGAGCTGATGCAAGTCTCTTGGTACTGGCCCCTGAAGTGTAATGGTCTAAGCTCACCGCTAGTAGATATTGTTCTCTTTGGGCTTTCTCTTTCGGGCTTCCTTTCAAGGTTTTTAAAATGTGCTTGTTAGGGAGAGGTTTCCAAACCCTTATAAATAATGTTTTGTTCTCCTTTCCAATGTGAAATCTCACAATCCACCTTCTTCGGTGCCCAGCGTCCTTACTGGCACTCGTTCCCTTTTCAATCGATGTGAGATCCCCAATCTACTCCTTTTGGGTCCAGCATCTTTAGACGCTCACACATCTCTCAAGTGTCTGGCTCTGATAAGAAGTCTCTCGACTTAAAATCAAATTTGGAGACTAACTCATTTGAAGACAACTCAACTTTGTTGATGAAGTTGATACTGAGTGAAGGATGATAATTTCCTTGGCAATTTATCCCCATGCAACATAGGAGCCACTGCCCCAATCTACCTGTCAACATCATAGATAGATTCATATAACCACAAACTCATGGACCTAAAAATCCTTCACATGGGCTACCTTAGATTTCTTTGAGAGAAGACAAGAAGACCAGAAGACAAATACAGGTTTCATTCTTTCATGATTTGATGGGTCTTTGTAAAAACTAATCTTTCACAACCAAAAACCCTTAGGACCAGGTGCAGTTGCCCTCATCGACAATTTACACAACCTCTCAAGGGGAAGACCTTTTACGCCGCTCCTTACCGGGCGCTATAAGAATTTTCTGGTGAAGATAATCCCTGAAAGCATACAAGGTATTGGCCCGTTTCACTTGTATAGACACAATAGAAG

Coding sequence (CDS)

ATGGAAAGCGGCGGCAAAGGGAGAGATGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCTCCTCCGTCATCCGCTTCTTCTCTTCCCAAGGAGCAAGCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGTCAAACTGCAAGGCATACATCGCCATTTTGTTCTCTTCGGGTTGATGGAGTTTCTAAGAAGAAGCTTTGATCGTCAGTTCTCTTCTGATGAAGTTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGAAGCCAGACGATGAGGAAATGGAAATTCTGAATCACGAGGAAGATTTCTGCCTACCACAAACCTTCTTTGTCAAAGAAGAGTCTTAA

Protein sequence

MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIHRHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTFFVKEES

Homology

[Close]

BLAST of CmoCh18G011320 vs. ExPASy TrEMBL
Match: A0A6J1FZZ7 (uncharacterized protein LOC111449449 OS=Cucurbita moschata OX=3662 GN=LOC111449449 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.6e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIH 60
           MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIH
Sbjct: 1   MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIH 60

Query: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120
           RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF
Sbjct: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120

Query: 121 FVKEES 127
           FVKEES
Sbjct: 121 FVKEES 126

[Close]

BLAST of CmoCh18G011320 vs. ExPASy TrEMBL
Match: A0A6J1HYA5 (uncharacterized protein LOC111467738 OS=Cucurbita maxima OX=3661 GN=LOC111467738 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIH 60
           MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQ+QIELELK+LQALEIYPLVKLQGIH
Sbjct: 1   MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQSQIELELKILQALEIYPLVKLQGIH 60

Query: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120
           RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF
Sbjct: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120

Query: 121 FVKEES 127
           FVKEES
Sbjct: 121 FVKEES 126

[Close]

BLAST of CmoCh18G011320 vs. ExPASy TrEMBL
Match: A0A1S3BFV8 (uncharacterized protein LOC103489178 OS=Cucumis melo OX=3656 GN=LOC103489178 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.5e-61
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIH 60
           MESGGKGR+EEQDG+SVHSPCKAPPSSASSLPKEQ QIELELKLLQALEIYPLVKLQGIH
Sbjct: 1   MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEQPQIELELKLLQALEIYPLVKLQGIH 60

Query: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120
           RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF
Sbjct: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120

Query: 121 FVKEES 127
           FVKEES
Sbjct: 121 FVKEES 126

[Close]

BLAST of CmoCh18G011320 vs. ExPASy TrEMBL
Match: A0A0A0KQU2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606640 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.2e-60
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIH 60
           MESGGKGR+EEQDG+SVHSPCKAPPSSASSLPKE  QIELELKLLQALEIYPLVKLQGIH
Sbjct: 1   MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEHPQIELELKLLQALEIYPLVKLQGIH 60

Query: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120
           RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF
Sbjct: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120

Query: 121 FVKEES 127
           FVKEES
Sbjct: 121 FVKEES 126

[Close]

BLAST of CmoCh18G011320 vs. ExPASy TrEMBL
Match: A0A6J1J1E0 (uncharacterized protein LOC111482526 OS=Cucurbita maxima OX=3661 GN=LOC111482526 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIH 60
           MESGGKGR+EEQDG+SVHSPCKAPPSSASSLPKEQ QIELELKLLQALEIYPLVKLQGIH
Sbjct: 1   MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEQPQIELELKLLQALEIYPLVKLQGIH 60

Query: 61  RHFVLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTF 120
           RHFVLFGLMEFLRRSFDR FSSDEVLQLLDRFYNLEMLKPDDEEMEILN EEDFCLPQTF
Sbjct: 61  RHFVLFGLMEFLRRSFDRPFSSDEVLQLLDRFYNLEMLKPDDEEMEILNQEEDFCLPQTF 120

Query: 121 FVKEES 127
           FVKEES
Sbjct: 121 FVKEES 126

[Close]

BLAST of CmoCh18G011320 vs. TAIR 10
Match: AT1G26470.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 96/122 (78.69%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 4   GGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLVKLQGIHRHF 63
           GGK ++EEQDG+SVHSPCKA PSSASSL KEQ+Q+ELEL+LL+ALEIYP VKL+GIHRHF
Sbjct: 11  GGKEKEEEQDGLSVHSPCKALPSSASSLSKEQSQVELELRLLEALEIYPPVKLRGIHRHF 70

Query: 64  VLFGLMEFLRRSFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTFFVK 123
           VL+GLME+L RSFDR F++DEVLQLLDRFYN+EMLK DDE+++ILNHEEDF LPQ+FF K
Sbjct: 71  VLYGLMEYLGRSFDRPFTADEVLQLLDRFYNIEMLKSDDEDIDILNHEEDFTLPQSFFDK 130

Query: 124 EE 126
           EE
Sbjct: 131 EE 132

The following BLAST results are available for this feature:

BLAST of CmoCh18G011320 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G011320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZZ7	2.6e-62	100.00	uncharacterized protein LOC111449449 OS=Cucurbita moschata OX=3662 GN=LOC1114494...	[more]
A0A6J1HYA5	1.0e-61	98.41	uncharacterized protein LOC111467738 OS=Cucurbita maxima OX=3661 GN=LOC111467738...	[more]
A0A1S3BFV8	8.5e-61	97.62	uncharacterized protein LOC103489178 OS=Cucumis melo OX=3656 GN=LOC103489178 PE=...	[more]
A0A0A0KQU2	3.2e-60	96.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606640 PE=3 SV=1	[more]
A0A6J1J1E0	3.6e-59	96.03	uncharacterized protein LOC111482526 OS=Cucurbita maxima OX=3661 GN=LOC111482526...	[more]

BLAST of CmoCh18G011320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26470.1	1.1e-49	78.69	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR13581:SF6	BNAA07G09500D PROTEIN	coord: 8..125
IPR012423	Chromatin modification-related protein Eaf7/MRGBP	PANTHER	PTHR13581	MRG-BINDING PROTEIN	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G011320.1	CmoCh18G011320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0035267	NuA4 histone acetyltransferase complex
cellular_component	GO:0043189	H4/H2A histone acetyltransferase complex
cellular_component	GO:0005634	nucleus