CmoCh18G011270 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G011270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionATP synthase subunit alpha, mitochondrial
LocationCmo_Chr18: 11612434 .. 11613327 (-)
RNA-Seq ExpressionCmoCh18G011270
SyntenyCmoCh18G011270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGCAAACGAGCCCTTATAATTAGGGACCGACAAACTGAAAAAACAGCTATTGCTTTCGATACCATATTAAACCAAAACGAAATGAACTCGAGGCTGAGCATCGTGACAGCAAAGATGTGGTTTGAATCAGTTGTAGAAGGTAATCACAGTTGTTCCAAATGTAAATAATGTAATGCTGTTGTGGAAGTTTTATGTATACACAGTGCATTAGAAAAGGAATTGGTTTTCTGAGTATCATAGAAGTGTTAAAACATTTGTATTTATGATACAATTTTGACGTTTCTATGATATGATTAAATTGGTGTGATGCCTTTGATTTTGTGTTTAAAAATTATTTCCAAAGCTTCAATAATATTCTTAATTTTGAATTATCTACGTGGGTTATATGGTATTAAAGTGTGTTGTTGTCTACTAGCTTTTAGCTTATAACATTGTTTTCATTCAAATTATTTTCAACCCATTTCCTTACTTGTGTTTTTTAAAATATTTTTTTTTTAGCATACGCCGATGTTGTACTCATAACTGATTTGTTAGTTGGGTTAGAACAAGTGTAGCACAATCACTATCTTATTGTTTGTAATATCCGAATATCTCATAACTGACTTATTCGTTGGGTTAGAACAAGTGTAGCACTATCTCGTTGTCTGTAAAATTCGAATATCTCATAACTCACTTGTTCGTTGGGTTAGAACAAGTGTAGCACAATCTGCTAATTTAAGAGTACGAATGTGATAAGTGGTATCAAATATTTATTTGACAAATATCTTTTTAACTTTTAAAATCCTCTAAAAATATACATTTAAATTTTCAAAAATTTCCTAATACCACTTTTTTATTTTATTTTAAGAATATCTTTCGACTATCAAAATTTTCATTAATACTATTTAA

mRNA sequence

ATGGCTGGCAAACGAGCCCTTATAATTAGGGACCGACAAACTGAAAAAACAGCTATTGCTTTCGATACCATATTAAACCAAAACGAAATGAACTCGAGGCTGAGCATCGTGACAGCAAAGATGTGGTTTGAATCAGTTGTAGAAGAATATCTTTCGACTATCAAAATTTTCATTAATACTATTTAA

Coding sequence (CDS)

ATGGCTGGCAAACGAGCCCTTATAATTAGGGACCGACAAACTGAAAAAACAGCTATTGCTTTCGATACCATATTAAACCAAAACGAAATGAACTCGAGGCTGAGCATCGTGACAGCAAAGATGTGGTTTGAATCAGTTGTAGAAGAATATCTTTCGACTATCAAAATTTTCATTAATACTATTTAA

Protein sequence

MAGKRALIIRDRQTEKTAIAFDTILNQNEMNSRLSIVTAKMWFESVVEEYLSTIKIFINTI
Homology
[Close]
BLAST of CmoCh18G011270 vs. ExPASy Swiss-Prot
Match: P18260 (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMNSR 34
           G+R LII DRQT KTAIA DTILNQ +MNSR
Sbjct: 164 GQRELIIGDRQTGKTAIAIDTILNQKQMNSR 194

[Close]
BLAST of CmoCh18G011270 vs. ExPASy Swiss-Prot
Match: P05494 (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMNSR 34
           G+R LII DRQT KTAIA DTILNQ +MNSR
Sbjct: 164 GQRELIIGDRQTGKTAIAIDTILNQKQMNSR 194

[Close]
BLAST of CmoCh18G011270 vs. ExPASy Swiss-Prot
Match: P05492 (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMNSR 34
           G+R LII DRQT KTAIA DTILNQ +MNSR
Sbjct: 164 GQRELIIGDRQTGKTAIAIDTILNQKQMNSR 194

[Close]
BLAST of CmoCh18G011270 vs. ExPASy Swiss-Prot
Match: P0C520 (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMNSR 34
           G+R LII DRQT KTAIA DTILNQ +MNSR
Sbjct: 164 GQRELIIGDRQTGKTAIAIDTILNQKQMNSR 194

[Close]
BLAST of CmoCh18G011270 vs. ExPASy Swiss-Prot
Match: P0C521 (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=ATPA PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMNSR 34
           G+R LII DRQT KTAIA DTILNQ +MNSR
Sbjct: 164 GQRELIIGDRQTGKTAIAIDTILNQKQMNSR 194

[Close]
BLAST of CmoCh18G011270 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 44.3 bits (103), Expect = 4.1e-05
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMNSRLSIVTAKMWFESV-VEEYLSTIKIFINTI 62
           G+R L+I DRQT KT IA DTILNQ ++NSR +  +  M+   V + +  ST+   I T+
Sbjct: 434 GQRELLIGDRQTGKTTIAIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTL 493

[Close]
BLAST of CmoCh18G011270 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 41.6 bits (96), Expect = 2.7e-04
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMNSRLSIVTAKMWFESV-VEEYLSTIKIFINTI 62
           G+R L+I  RQT KT IA DTILNQ ++NSR +  +  M+   V + +  ST+   I T+
Sbjct: 164 GQRELLIGGRQTGKTTIAIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTL 223

[Close]
BLAST of CmoCh18G011270 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 40.0 bits (92), Expect = 7.8e-04
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 0 

Query: 3   GKRALIIRDRQTEKTAIAFDTILNQNEMN 32
           G+R LII DRQT KTA+A DTILNQ   N
Sbjct: 163 GQRELIIGDRQTGKTAVATDTILNQQGQN 191

The following BLAST results are available for this feature:
BLAST of CmoCh18G011270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P182604.0e-0577.42ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P... [more]
P054944.0e-0577.42ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1[more]
P054924.0e-0577.42ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P... [more]
P0C5204.0e-0577.42ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 S... [more]
P0C5214.0e-0577.42ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946... [more]
BLAST of CmoCh18G011270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh18G011270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07698.14.1e-0545.00ATPase, F1 complex, alpha subunit protein [more]
ATMG01190.12.7e-0443.33ATP synthase subunit 1 [more]
ATCG00120.17.8e-0468.97ATP synthase subunit alpha [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G011270.1CmoCh18G011270.1mRNA