CmoCh18G010410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G010410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Heavy metal-associated domain containing protein
Location	Cmo_Chr18: 11137833 .. 11139320 (+)
RNA-Seq Expression	CmoCh18G010410
Synteny	CmoCh18G010410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACAAGGGAGTTTTTGGTCACACAAGCAACCTCGAAGGAATCATCCATGAGAGGAAAAAATTGGCTAACTCTTTGCGGAAAGCAGCTGTCATTGTGAAACGAACCATCTTTGTCAACTCTTACTTATCTTCCTTTCCCCTTCTCCTTTATCGCAACCACTTAAACAAAGCTTTTCACAGTCCCATCATCCATGGCTCATAAAATCCTCCCCTGTTTCGCCGGCAGCGTTTAACCGGACCATGGCGGAGCGGCCCAACAAGACGGCGGCGGCGGGAATTGGAGTTCGGAAGCTTAAGATTTTCCCTCATGCTTCTAGCCTTGCCTCCGTCGAATCCTTATCTCTGCCTCTCGTCTCTGCTTTTTCTCTGTATCTCCGCCGTTTTTCGAGCTCTCCGGCTGAAATTAACGCTTTATGGTCCGTGATTCTTCAGGTTCAGGAAATCGTGTTCGCGGCGGACATTGGCTGCGCTGAATGCCAGAAGAAATTAGCGAATATTCTTGCCAAAATGAACGGTGAGTTTCTGGGAATTTTGGGGCTCTGTTTCCTCGGAATCTGATTCCATCTTCCAATTTCAATGGCCTGTTATTTCTAACCTAGTATTAGAGTCATATTCGGTGTAGTCAATTTTAGACGAACACGACTCTCTACAATAGTATGATATTGTCCACTTTGAGCATGAGCTTTCGTGGCTTTGCTTTGGGTTTACCCAAAATGCCTCCCGTCAATGGAGAGAGTATTATTTGTTTATAAACTCATGCCTCCAACAGTCAAAAGTGACTAAAGTGTCGAACAAAGGGTGTACTTTGTTCGAAGGCTCAAGATAAAGAGTCGAGCCCGAATAAAGGGAGATTATTAGAGGGCTCCATCGATCTCAGGGAGGCTCTATGATGTAGTTTGTTCGATGAGAGAATTGTTTGGAGGGAGTCCACACCGGTAGTTTCTCATTGGTGTGAGATTTTTTGGGGAAGTTCGAAGTAAAGCCATGAGAGCTTATGGTCAAAGTGGACAATATCATATCATTTCTGTTCCTTTTTAGAACCTGAGTTGTTTCTAATTGGAAGTTCTTAATGATTTTTGTTGTGGATTTAGATACAGAGTCTGTGGTGGTGAATTTGCTGGACAAGAAAGTGATACTGACTCGAAAATTGCAGATTCAAACAAGTAGAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCTGATAATGGTGAAGATATTGTGATATATAATGGAATATTTTCAGTCACATTCGTAGATAAATAAAGGATCATACTCTTTGTTGTTTACTTTCAGCGATTATTGTTTTTATGAGAATATTAAATATTGGGTTCCGAATGCAACAAAATCATCGTACATTAAAAGATGATTTTGATCGGAGTTGAAAACATTTTAAAGGGGTGAGTCTTGCTGGAAAACATGGCTCTGGCTCAATGTAATTACGGGTTTAATCGATTAATGCTCCGTTTGTGTCGTTTTGGTTA

mRNA sequence

AAAAACAAGGGAGTTTTTGGTCACACAAGCAACCTCGAAGGAATCATCCATGAGAGGAAAAAATTGGCTAACTCTTTGCGGAAAGCAGCTGTCATTGTGAAACGAACCATCTTTGTCAACTCTTACTTATCTTCCTTTCCCCTTCTCCTTTATCGCAACCACTTAAACAAAGCTTTTCACAGTCCCATCATCCATGGCTCATAAAATCCTCCCCTGTTTCGCCGGCAGCGTTTAACCGGACCATGGCGGAGCGGCCCAACAAGACGGCGGCGGCGGGAATTGGAGTTCGGAAGCTTAAGATTTTCCCTCATGCTTCTAGCCTTGCCTCCGTCGAATCCTTATCTCTGCCTCTCGTCTCTGCTTTTTCTCTGTATCTCCGCCGTTTTTCGAGCTCTCCGGCTGAAATTAACGCTTTATGGTCCGTGATTCTTCAGGTTCAGGAAATCGTGTTCGCGGCGGACATTGGCTGCGCTGAATGCCAGAAGAAATTAGCGAATATTCTTGCCAAAATGAACGATACAGAGTCTGTGGTGGTGAATTTGCTGGACAAGAAAGTGATACTGACTCGAAAATTGCAGATTCAAACAAGTAGAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCTGATAATGGTGAAGATATTGTGATATATAATGGAATATTTTCAGTCACATTCGTAGATAAATAAAGGATCATACTCTTTGTTGTTTACTTTCAGCGATTATTGTTTTTATGAGAATATTAAATATTGGGTTCCGAATGCAACAAAATCATCGTACATTAAAAGATGATTTTGATCGGAGTTGAAAACATTTTAAAGGGGTGAGTCTTGCTGGAAAACATGGCTCTGGCTCAATGTAATTACGGGTTTAATCGATTAATGCTCCGTTTGTGTCGTTTTGGTTA

Coding sequence (CDS)

ATGGCGGAGCGGCCCAACAAGACGGCGGCGGCGGGAATTGGAGTTCGGAAGCTTAAGATTTTCCCTCATGCTTCTAGCCTTGCCTCCGTCGAATCCTTATCTCTGCCTCTCGTCTCTGCTTTTTCTCTGTATCTCCGCCGTTTTTCGAGCTCTCCGGCTGAAATTAACGCTTTATGGTCCGTGATTCTTCAGGTTCAGGAAATCGTGTTCGCGGCGGACATTGGCTGCGCTGAATGCCAGAAGAAATTAGCGAATATTCTTGCCAAAATGAACGATACAGAGTCTGTGGTGGTGAATTTGCTGGACAAGAAAGTGATACTGACTCGAAAATTGCAGATTCAAACAAGTAGAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCTGA

Protein sequence

MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWSVILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVSTIKRLLGSSF

Homology

[Close]

BLAST of CmoCh18G010410 vs. ExPASy TrEMBL
Match: A0A6J1G176 (uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWS 60
           MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWS
Sbjct: 1   MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWS 60

Query: 61  VILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVST 120
           VILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVST
Sbjct: 61  VILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVST 120

Query: 121 IKRLLGSSF 130
           IKRLLGSSF
Sbjct: 121 IKRLLGSSF 129

[Close]

BLAST of CmoCh18G010410 vs. ExPASy TrEMBL
Match: A0A6J1G168 (uncharacterized protein LOC111449743 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWS 60
           MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWS
Sbjct: 1   MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWS 60

Query: 61  VILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVST 120
           VILQVQEIVFAADIGCAECQKKLANILAKMN  ESVVVNLLDKKVILTRKLQIQTSRVST
Sbjct: 61  VILQVQEIVFAADIGCAECQKKLANILAKMN--ESVVVNLLDKKVILTRKLQIQTSRVST 120

Query: 121 IKRLLGSSF 130
           IKRLLGSSF
Sbjct: 121 IKRLLGSSF 127

[Close]

BLAST of CmoCh18G010410 vs. ExPASy TrEMBL
Match: A0A6J1G188 (uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.5e-40
Identity = 102/129 (79.07%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWS 60
           MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPL                       
Sbjct: 1   MAERPNKTAAAGIGVRKLKIFPHASSLASVESLSLPL----------------------- 60

Query: 61  VILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVST 120
               VQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVST
Sbjct: 61  ----VQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRVST 102

Query: 121 IKRLLGSSF 130
           IKRLLGSSF
Sbjct: 121 IKRLLGSSF 102

[Close]

BLAST of CmoCh18G010410 vs. ExPASy TrEMBL
Match: A0A6J1HUG9 (uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467567 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 95/131 (72.52%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 1   MAERPNK--TAAAGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINAL 60
           MAERPNK   AAAGIGVRKLKIFPHASSLAS+ESLSLPL                     
Sbjct: 1   MAERPNKAAAAAAGIGVRKLKIFPHASSLASIESLSLPL--------------------- 60

Query: 61  WSVILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQTSRV 120
                 VQEIVF ADIGCAECQKKLANIL+KMNDTESVVVNLLDKKVILTRKLQI +SRV
Sbjct: 61  ------VQEIVFTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILTRKLQIPSSRV 104

Query: 121 STIKRLLGSSF 130
           ST+KRLLGSSF
Sbjct: 121 STVKRLLGSSF 104

[Close]

BLAST of CmoCh18G010410 vs. ExPASy TrEMBL
Match: A0A6J1HZ87 (uncharacterized protein LOC111467567 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467567 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.9e-34
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 41  FSLYLRRFSSSPAEINALWSVILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNL 100
           F  YLRRFSSSPAEIN LWSVILQVQEIVF ADIGCAECQKKLANIL+KMNDTESVVVNL
Sbjct: 19  FLCYLRRFSSSPAEINPLWSVILQVQEIVFTADIGCAECQKKLANILSKMNDTESVVVNL 78

Query: 101 LDKKVILTRKLQIQTSRVSTIKRLLGSSF 130
           LDKKVILTRKLQI +SRVST+KRLLGSSF
Sbjct: 79  LDKKVILTRKLQIPSSRVSTVKRLLGSSF 107

[Close]

BLAST of CmoCh18G010410 vs. TAIR 10
Match: AT1G68585.1 (unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-08
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 25  SSLASVESLSLPLVSAFSLYLRRFSSSPAEINALWSVILQVQEIVFAADIGCAECQKKLA 84
           +SLASV SLS+PL                           +QEIV +ADI C++CQ+K+A
Sbjct: 26  TSLASVASLSMPL---------------------------IQEIVLSADIRCSDCQEKVA 85

Query: 85  NILAKMNDTESVVVNLLDKKVILT------RKL-----QIQTSRVSTIKRLL 126
           +I+A+M +T S++V++L+KKV LT      R++     +    ++STIKRL+
Sbjct: 86  DIMARMIETYSILVSVLEKKVTLTCTYSGDRRVSKSYGEALLCKISTIKRLI 110

The following BLAST results are available for this feature:

BLAST of CmoCh18G010410 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G010410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G176	2.8e-59	100.00	uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G168	2.2e-56	98.45	uncharacterized protein LOC111449743 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G188	6.5e-40	79.07	uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HUG9	1.3e-35	72.52	uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HZ87	6.9e-34	91.01	uncharacterized protein LOC111467567 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh18G010410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68585.1	2.9e-08	36.61	unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 63..125 e-value: 1.0E-5 score: 27.6
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 66..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010410.1	CmoCh18G010410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding