CmoCh18G010120 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G010120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X1
Location	Cmo_Chr18: 10979240 .. 10980265 (+)
RNA-Seq Expression	CmoCh18G010120
Synteny	CmoCh18G010120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTCATATGGGGTTGTTCTGTTCTTTCATTTTGTCCTTTGTTCTTTCTTATCTAGTAGCACATCCTTTGGCTCGGAATGATACTAGTTTTGTTCGTCCAGATTGCCCGCCCTTCGATTGTGGAAATTTTGGCTTCTTAGGATTCCCTTTTAACAACGAAACGCTTACTGATTGCGGATTATACACAGTTAGAAACTGCTCAGGAGAGCCAAAAATCCAGCTGAAACGTGAACGAGATGTATGGTTCGATGTTGTTAGCATATCTCAGGCTAATGTCATCCATATCGATGACACGGAACTTCAAAAGCAAATAAACTCTCGCAATTGTTCAATTCTGGACGATCTGTCTCTTCCGACTTCTCCTTCATCTTCTTTATCCACAAACAATAATATTACTTTATACAATTGCACAGATAATCCTGGAGGTGCTTTTCCTCTTTTCATCAGTAAATTTAGCTGCCCTGGTATTTATTCAGTCCTCAACTCTGGTACTCCTCCAAACTGTTCCACTTCCAATTCTAGATTTTTAGTTCCAGCTCTCCCGGTTGGTCCCAATAATTCTGTTCTTGAGTTTACTGCTGATTTCCAACTGCGAGTGACCGTATCTAGTATATGTTATGACTGTTTCCGTGAAGGAGGCCAATGCTCGATTACCAATGAAAAATTTGTGTGTAAGGATGGAAAACGAGAAGCAAGCAAAGGTATTGAATTTTATGTAAAAGTCCAGTAAACTGTTCGTGGATTGTTTGGATTAGGCTTTGCAATTTATTTCTTAGTTACAATTTCCTTGTTTTTACTGCGTTTTTCCTACTGGAAATGGGCATTATTGGTTTTTCAGATGGGTTTTTGAAGTCTGTTCTTGTGCATGATCTGTGTTTCGAAGAACAGAAGCTGGGTTATTCTACAATGAATGGTTATGAGTTTGAATCTAACACAATTCTTTTTCATTGCTATTGCAGATAAAAGTAGAATGAGCTTGTGGATAGGACTAGGTGGGGCAACTTTCTTTGAGAAATTGTAA

mRNA sequence

ATGGAATTTCATATGGGGTTGTTCTGTTCTTTCATTTTGTCCTTTGTTCTTTCTTATCTAGTAGCACATCCTTTGGCTCGGAATGATACTAGTTTTGTTCGTCCAGATTGCCCGCCCTTCGATTGTGGAAATTTTGGCTTCTTAGGATTCCCTTTTAACAACGAAACGCTTACTGATTGCGGATTATACACAGTTAGAAACTGCTCAGGAGAGCCAAAAATCCAGCTGAAACGTGAACGAGATGTATGGTTCGATGTTGTTAGCATATCTCAGGCTAATGTCATCCATATCGATGACACGGAACTTCAAAAGCAAATAAACTCTCGCAATTGTTCAATTCTGGACGATCTGTCTCTTCCGACTTCTCCTTCATCTTCTTTATCCACAAACAATAATATTACTTTATACAATTGCACAGATAATCCTGGAGGTGCTTTTCCTCTTTTCATCAGTAAATTTAGCTGCCCTGGTATTTATTCAGTCCTCAACTCTGGTACTCCTCCAAACTGTTCCACTTCCAATTCTAGATTTTTAGTTCCAGCTCTCCCGGTTGGTCCCAATAATTCTGTTCTTGAGTTTACTGCTGATTTCCAACTGCGAGTGACCGTATCTAGTATATGTTATGACTGTTTCCGTGAAGGAGGCCAATGCTCGATTACCAATGAAAAATTTGTGTGTAAGGATGGAAAACGAGAAGCAAGCAAAGATGGGTTTTTGAAGTCTGTTCTTGTGCATGATCTGTGTTTCGAAGAACAGAAGCTGGATAAAAGTAGAATGAGCTTGTGGATAGGACTAGGTGGGGCAACTTTCTTTGAGAAATTGTAA

Coding sequence (CDS)

ATGGAATTTCATATGGGGTTGTTCTGTTCTTTCATTTTGTCCTTTGTTCTTTCTTATCTAGTAGCACATCCTTTGGCTCGGAATGATACTAGTTTTGTTCGTCCAGATTGCCCGCCCTTCGATTGTGGAAATTTTGGCTTCTTAGGATTCCCTTTTAACAACGAAACGCTTACTGATTGCGGATTATACACAGTTAGAAACTGCTCAGGAGAGCCAAAAATCCAGCTGAAACGTGAACGAGATGTATGGTTCGATGTTGTTAGCATATCTCAGGCTAATGTCATCCATATCGATGACACGGAACTTCAAAAGCAAATAAACTCTCGCAATTGTTCAATTCTGGACGATCTGTCTCTTCCGACTTCTCCTTCATCTTCTTTATCCACAAACAATAATATTACTTTATACAATTGCACAGATAATCCTGGAGGTGCTTTTCCTCTTTTCATCAGTAAATTTAGCTGCCCTGGTATTTATTCAGTCCTCAACTCTGGTACTCCTCCAAACTGTTCCACTTCCAATTCTAGATTTTTAGTTCCAGCTCTCCCGGTTGGTCCCAATAATTCTGTTCTTGAGTTTACTGCTGATTTCCAACTGCGAGTGACCGTATCTAGTATATGTTATGACTGTTTCCGTGAAGGAGGCCAATGCTCGATTACCAATGAAAAATTTGTGTGTAAGGATGGAAAACGAGAAGCAAGCAAAGATGGGTTTTTGAAGTCTGTTCTTGTGCATGATCTGTGTTTCGAAGAACAGAAGCTGGATAAAAGTAGAATGAGCTTGTGGATAGGACTAGGTGGGGCAACTTTCTTTGAGAAATTGTAA

Protein sequence

MEFHMGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDCGLYTVRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLPTSPSSSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVPALPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCKDGKREASKDGFLKSVLVHDLCFEEQKLDKSRMSLWIGLGGATFFEKL

Homology

[Close]

BLAST of CmoCh18G010120 vs. ExPASy TrEMBL
Match: A0A6J1G1Z8 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449960 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.0e-139
Identity = 247/266 (92.86%), Postives = 247/266 (92.86%), Query Frame = 0


Query: 1   MEFHMGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDC 60
           MEFHMGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDC
Sbjct: 1   MEFHMGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDC 60

Query: 61  GLYTVRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLP 120
           GLYTVRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLP
Sbjct: 61  GLYTVRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLP 120

Query: 121 TSPSSSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVP 180
           TSPSSSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVP
Sbjct: 121 TSPSSSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVP 180

Query: 181 ALPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCKDGKREASKDGFLK 240
           ALPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCKDGKREASK     
Sbjct: 181 ALPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCKDGKREASK----- 240

Query: 241 SVLVHDLCFEEQKLDKSRMSLWIGLG 267
                         DKSRMSLWIGLG
Sbjct: 241 --------------DKSRMSLWIGLG 247

[Close]

BLAST of CmoCh18G010120 vs. ExPASy TrEMBL
Match: A0A6J1HTZ2 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467449 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 3.2e-129
Identity = 230/266 (86.47%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 1   MEFHMGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDC 60
           MEFHM LFCSF LSFVLS+LVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDC
Sbjct: 1   MEFHMALFCSFSLSFVLSHLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDC 60

Query: 61  GLYTVRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLP 120
           GL+TVRNCSG+PKIQLKRERDVWFDVVSISQAN+IHI+DTELQKQINSRNCSILDDLSLP
Sbjct: 61  GLHTVRNCSGKPKIQLKRERDVWFDVVSISQANIIHINDTELQKQINSRNCSILDDLSLP 120

Query: 121 TSPSSSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVP 180
           TSPS SLSTNNNITLYNCTDNPG AFPLFISKFSCPGIYS+LNS TPPNCSTSNSRFLVP
Sbjct: 121 TSPSFSLSTNNNITLYNCTDNPGDAFPLFISKFSCPGIYSILNSDTPPNCSTSNSRFLVP 180

Query: 181 ALPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCKDGKREASKDGFLK 240
            LPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCS TNEKFVCKDGKR+ SK     
Sbjct: 181 VLPVGPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSFTNEKFVCKDGKRKVSK----- 240

Query: 241 SVLVHDLCFEEQKLDKSRMSLWIGLG 267
                         DKSRMSL I LG
Sbjct: 241 --------------DKSRMSLLIALG 247

[Close]

BLAST of CmoCh18G010120 vs. ExPASy TrEMBL
Match: A0A0A0KWG6 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610360 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.7e-80
Identity = 145/236 (61.44%), Postives = 180/236 (76.27%), Query Frame = 0


Query: 5   MGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDCGLYT 64
           M  FC F+LSFVLS+LVA  LA NDT +V P C PF+CGN G +GFPFNN +LTDCG YT
Sbjct: 1   MASFC-FVLSFVLSHLVALSLAWNDTRYVHPICTPFECGNLGLIGFPFNNMSLTDCGFYT 60

Query: 65  VRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLPTSPS 124
           V+NCSG+PKIQL R +++WFDV +ISQANVIHI+D EL+K+IN+RNC+ILDDL+LP S  
Sbjct: 61  VKNCSGQPKIQLNRGKELWFDVTTISQANVIHINDQELRKRINARNCTILDDLALPISSL 120

Query: 125 SSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVPALPV 184
           SSLST+NN+T+Y CT+ P  A PLFIS F+CP  Y+ LN+   PNC TS S+F+VP  PV
Sbjct: 121 SSLSTDNNLTMYYCTEKPKDALPLFISSFNCPDYYTYLNTSASPNCLTSKSKFVVPVRPV 180

Query: 185 GPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCKDGKREASKDGFLK 241
           GPNNS++ FT+DFQL+VT+S  C  CF  GGQCS T   FVC+    ++ KD   K
Sbjct: 181 GPNNSIVVFTSDFQLQVTISIPCQQCFHRGGQCSDTPGYFVCEGENTKSRKDQLKK 235

[Close]

BLAST of CmoCh18G010120 vs. ExPASy TrEMBL
Match: A0A5A7SZE0 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001180 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.8e-79
Identity = 140/223 (62.78%), Postives = 179/223 (80.27%), Query Frame = 0


Query: 5   MGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDCGLYT 64
           M  FC F+LSFVLS+LVA  LA ND+ +V P C PF+CGN G +GFPFNN +LTDCG YT
Sbjct: 1   MASFC-FVLSFVLSHLVALSLAWNDSRYVHPICTPFECGNLGLIGFPFNNMSLTDCGFYT 60

Query: 65  VRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLPTSPS 124
           V++CSG+PKIQL RE+++WF+V++ISQANVIHIDD ELQK+I +R+C+ILDDL+LP S  
Sbjct: 61  VKDCSGQPKIQLSREKELWFNVIAISQANVIHIDDQELQKRITARDCTILDDLALPMSSL 120

Query: 125 SSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVPALPV 184
           SSLST+NN+T+YNCTD P  A PLFIS F+CPG Y+ +N+   PNC TS S+F+VP  PV
Sbjct: 121 SSLSTDNNLTMYNCTDKPKDALPLFISSFNCPGYYTYINTSASPNCPTSKSKFVVPVRPV 180

Query: 185 GPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCK 228
           GP+NS++EFT++FQL+VTV   C+ CF  GG+CS T   FVC+
Sbjct: 181 GPSNSLVEFTSNFQLQVTVFHPCHQCFHRGGRCSDTQGYFVCE 222

[Close]

BLAST of CmoCh18G010120 vs. ExPASy TrEMBL
Match: A0A1S3BFJ7 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489305 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.8e-79
Identity = 140/223 (62.78%), Postives = 179/223 (80.27%), Query Frame = 0


Query: 5   MGLFCSFILSFVLSYLVAHPLARNDTSFVRPDCPPFDCGNFGFLGFPFNNETLTDCGLYT 64
           M  FC F+LSFVLS+LVA  LA ND+ +V P C PF+CGN G +GFPFNN +LTDCG YT
Sbjct: 1   MASFC-FVLSFVLSHLVALSLAWNDSRYVHPICTPFECGNLGLIGFPFNNMSLTDCGFYT 60

Query: 65  VRNCSGEPKIQLKRERDVWFDVVSISQANVIHIDDTELQKQINSRNCSILDDLSLPTSPS 124
           V++CSG+PKIQL RE+++WF+V++ISQANVIHIDD ELQK+I +R+C+ILDDL+LP S  
Sbjct: 61  VKDCSGQPKIQLSREKELWFNVIAISQANVIHIDDQELQKRITARDCTILDDLALPMSSL 120

Query: 125 SSLSTNNNITLYNCTDNPGGAFPLFISKFSCPGIYSVLNSGTPPNCSTSNSRFLVPALPV 184
           SSLST+NN+T+YNCTD P  A PLFIS F+CPG Y+ +N+   PNC TS S+F+VP  PV
Sbjct: 121 SSLSTDNNLTMYNCTDKPKDALPLFISSFNCPGYYTYINTSASPNCPTSKSKFVVPVRPV 180

Query: 185 GPNNSVLEFTADFQLRVTVSSICYDCFREGGQCSITNEKFVCK 228
           GP+NS++EFT++FQL+VTV   C+ CF  GG+CS T   FVC+
Sbjct: 181 GPSNSLVEFTSNFQLQVTVFHPCHQCFHRGGRCSDTQGYFVCE 222

The following BLAST results are available for this feature:

BLAST of CmoCh18G010120 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G010120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1Z8	2.0e-139	92.86	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isof...	[more]
A0A6J1HTZ2	3.2e-129	86.47	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isof...	[more]
A0A0A0KWG6	4.7e-80	61.44	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610...	[more]
A0A5A7SZE0	1.8e-79	62.78	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isof...	[more]
A0A1S3BFJ7	1.8e-79	62.78	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isof...	[more]

BLAST of CmoCh18G010120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46008:SF32	PROTEIN, PUTATIVE-RELATED	coord: 5..231
IPR044652	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1/1.2/1.3/1.4	PANTHER	PTHR46008	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	coord: 5..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010120.1	CmoCh18G010120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity