CmoCh18G010070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G010070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reticulon-like protein
Location	Cmo_Chr18: 10964982 .. 10967069 (-)
RNA-Seq Expression	CmoCh18G010070
Synteny	CmoCh18G010070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAACTCCGGCGACCGTCCGAGGTTTCTGCATTCCATTTTTGGGCATGGCAAAGGTTCAGAATTAAAAGTTTATAGTTCTGTTATAAAATATATCAATTTGATGTTGAATATAAGGGGTGTTTTGGATTTGAATGGCAGTGGCGGAGTTGATGCTGTGGAAGAAGAAGAGAGAATCGGCGGCGATGTTGGCCGGAATCAGCGGCGTTTGGTTGCTGCTTGAGGTCTTGGACTACCACTTTGTTACTCTGCTTTGCTATCTACTCATCATTACTATGCTTCTTCTCTTCTCTTGGAACAAACTGGCTCTTCTCGTCAACTGGTAAATCCAATTATTCATTCTTATTCTATTTTTATCTCTAAACTTTCAATTTTGTTCGATTCCGCTTTAAATTCAGATAAATGTTATAATTTTAAATCTTCGATAAGTTTTCGTTGAAAATAAAGTTGTACAAAATTCACGAGAGAGAAGAACGAGCGCCGGCGAAGACGCTAGGCTTCGAAGGAGTGGATTGTGAGATCTCACGTCGGTTGAAGAAGGAAACAAAACATTTTTTTACTAGGATGTGAAAACCTCTCTTTAGCTGATGTGTTTTAAAACTTTGAGAGGGACGAGAGAAAGTTCGAAAAGAAAAGCTAGACAATATCTACTAATGATGGCTGTTACACTAATTTTTAATGATTAAAGTGTTATGAAAATATTTTGTTAAAATTACCGAGTGAAATGGCAAAAACTAAATATAGGGTAAAAATTATCGATCATATGAATTTATTTTTATAATAAGGTTTTAAAAGTAAAATAATTTTGTTTGATTTAAATAATTGGATGAATTTGCAAAAATTGAACATAGGATAAAAATGGTAGAACTCGTATGAATTTATGGTAAAAGTTGATGCAGTAATTTTTTTTTTTTATCTTATTGGTGACGTGGCTTGGCAGGGCTCCACCGAATGTGCATGATTTTGAGATCTCAAACGCCACTTTCACTCGTTTCTTTGATACAGTCAACTGGTTGGTCCACCACTTCTTTCAAATTTCAACTGGCCAAAACTTTAAGCTATTTGCAATGGTACCCTTCCAAATCTCACTATTTAATATATACCTATTTTTTATTTTTAAACGCCAAAGTTGAAATGGTACCCTTCCAAATCTCACAATCCCCACCCCTTTCGGGACTTAGTATTCTCGCTGGCACTCGCTCCTTTCTCTAATCGATGTGGGATTTCACAATCCATCCCCTTTGGGGGCTAGCATACTCGTTGGCACATCGTTTGGTGTCCACCTCTTGGAGGCTCAACGTCGTTGCTGGCACACTGGGCTTTTGAGGCCCAGTGTCTAGCTCTAATCTTATTTGTAACAGCCCAAGTCCACCATTAACATTATTTGTAACTGCCCAAGTCCACTATATTGTCCTCTTTGGACTTTTCCTCAAGATTTTTAAAACGCGTTTGCTGGGGGAGGTTTCCACACCTTCTAAGAAATGCTTCGTACTCCCTCTCCAACCGATGTATGATCTCACAATCCACCATTCGCTGACACTCGTTCACCTCTCCAATCAACGTGGGATCTCACACATAATCTTTATAAGATAGTAATCGATCAATGTTTATGAAGCTCATGAATCAACCCATTTTGCAGGTAATGGGTAGCATTTGGTTGGTATCACTCATTGGAGAGCTAACAAACTCATTGAATCTCATATACATTGGTTGGTATCACTCTCTTTCTCTCCCACTTTCTATAGAATTTCTATGTCTGAAAAAGACTGTGACATGTTGTTCTTAATATTGAGCAGTGTTTTTGAGCTTACAAACAGTTCCAATTGTGTTGGACAAGTACGAGGAGGAGATTCATAAGCTTGTCTCCAACCTCAAGTCTTCCATGGACACCTTCTTCCACACCTTACACTCCAATTTTCTCACCAAAATCCCAAGAAGGACCCATATCAAACAAACTTAGTTCCTAATACCCTATATTTCAATCACTTATTTTGTCCCGAACCCGTCTTAGATTCAATCAAAATTGAGTTGTATTCCATGTTTTTAAATACGTGTTTGATAGTAGATTTAGAAATCCATTAATGTA

mRNA sequence

ATGTCCAACTCCGGCGACCGTCCGAGGTTTCTGCATTCCATTTTTGGGCATGGCAAAGTGGCGGAGTTGATGCTGTGGAAGAAGAAGAGAGAATCGGCGGCGATGTTGGCCGGAATCAGCGGCGTTTGGTTGCTGCTTGAGGTCTTGGACTACCACTTTGTTACTCTGCTTTGCTATCTACTCATCATTACTATGCTTCTTCTCTTCTCTTGGAACAAACTGGCTCTTCTCGTCAACTGGGCTCCACCGAATGTGCATGATTTTGAGATCTCAAACGCCACTTTCACTCGTTTCTTTGATACAGTCAACTGGTTGGTCCACCACTTCTTTCAAATTTCAACTGGCCAAAACTTTAAGCTATTTGCAATGGTAATGGGTAGCATTTGGTTGGTATCACTCATTGGAGAGCTAACAAACTCATTGAATCTCATATACATTGTGTTTTTGAGCTTACAAACAGTTCCAATTGTGTTGGACAAGTACGAGGAGGAGATTCATAAGCTTGTCTCCAACCTCAAGTCTTCCATGGACACCTTCTTCCACACCTTACACTCCAATTTTCTCACCAAAATCCCAAGAAGGACCCATATCAAACAAACTTAGTTCCTAATACCCTATATTTCAATCACTTATTTTGTCCCGAACCCGTCTTAGATTCAATCAAAATTGAGTTGTATTCCATGTTTTTAAATACGTGTTTGATAGTAGATTTAGAAATCCATTAATGTA

Coding sequence (CDS)

ATGTCCAACTCCGGCGACCGTCCGAGGTTTCTGCATTCCATTTTTGGGCATGGCAAAGTGGCGGAGTTGATGCTGTGGAAGAAGAAGAGAGAATCGGCGGCGATGTTGGCCGGAATCAGCGGCGTTTGGTTGCTGCTTGAGGTCTTGGACTACCACTTTGTTACTCTGCTTTGCTATCTACTCATCATTACTATGCTTCTTCTCTTCTCTTGGAACAAACTGGCTCTTCTCGTCAACTGGGCTCCACCGAATGTGCATGATTTTGAGATCTCAAACGCCACTTTCACTCGTTTCTTTGATACAGTCAACTGGTTGGTCCACCACTTCTTTCAAATTTCAACTGGCCAAAACTTTAAGCTATTTGCAATGGTAATGGGTAGCATTTGGTTGGTATCACTCATTGGAGAGCTAACAAACTCATTGAATCTCATATACATTGTGTTTTTGAGCTTACAAACAGTTCCAATTGTGTTGGACAAGTACGAGGAGGAGATTCATAAGCTTGTCTCCAACCTCAAGTCTTCCATGGACACCTTCTTCCACACCTTACACTCCAATTTTCTCACCAAAATCCCAAGAAGGACCCATATCAAACAAACTTAG

Protein sequence

MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITMLLLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFKLFAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHTLHSNFLTKIPRRTHIKQT

Homology

[Close]

BLAST of CmoCh18G010070 vs. ExPASy Swiss-Prot
Match: A2RVT6 (Reticulon-like protein B14 OS=Arabidopsis thaliana OX=3702 GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-30
Identity = 63/194 (32.47%), Postives = 119/194 (61.34%), Query Frame = 0


Query: 2   SNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLL 61
           ++S  R R L+   G G+ A++M WK K+ES  +L   + +W L EV++Y F+T LC +L
Sbjct: 13  ASSSRRRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQIL 72

Query: 62  IITMLLLFSWNKL--ALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFK 121
           ++ + +   W+ +  + L+   PP+++D  IS + +   F+ +NW +   + IS+G++F+
Sbjct: 73  LLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFR 132

Query: 122 LFAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTF 181
           L  + + S+W++S++G   +SL L+YIVF+ L+T+P++ ++YEEE+    S     M   
Sbjct: 133 LLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKL 192

Query: 182 FHTLHSNFLTKIPR 194
            +  +S  + KIP+
Sbjct: 193 LNKFNSKVINKIPK 206

[Close]

BLAST of CmoCh18G010070 vs. ExPASy Swiss-Prot
Match: Q9LJQ5 (Reticulon-like protein B9 OS=Arabidopsis thaliana OX=3702 GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 63/193 (32.64%), Postives = 120/193 (62.18%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R R +HSIFG GKVA+++LW++ + +A ++ G+S +W L+EV++Y+F+TL+C+  + +ML
Sbjct: 26  RQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSML 85

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTR----FFDTVNWLVHHFFQISTGQNFKLFA 126
             F W+  +  +NW  P + +  +  ++F +    F    N ++     ++ G++  LF 
Sbjct: 86  FFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFF 145

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
           +   S+++VS+IG   N +NL++I F+S+QT+P++ + YE+++      L   M   +  
Sbjct: 146 LTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKK 205

Query: 187 LHSNFLTKIPRRT 196
           + +N L+KIPR T
Sbjct: 206 VDTNVLSKIPRGT 218

[Close]

BLAST of CmoCh18G010070 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.7e-24
Identity = 55/190 (28.95%), Postives = 106/190 (55.79%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R + +H + G GK A++ +WK K+ S  +L G +  W++ E+++YH +TLLC+++I+ + 
Sbjct: 76  REQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLA 135

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFF----QISTGQNFKLFA 126
           +LF W+   + +N +PP + +  I      +    +   ++  F    +I++G++ K F 
Sbjct: 136 VLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFL 195

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
           + +  +W++S++G   N L L YI  + L TVP+  DKYE+++  L       +   +  
Sbjct: 196 IAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAV 255

Query: 187 LHSNFLTKIP 193
           L    L+KIP
Sbjct: 256 LDEKVLSKIP 265

[Close]

BLAST of CmoCh18G010070 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22
Identity = 53/191 (27.75%), Postives = 104/191 (54.45%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R R +H + G GK A++ +WK K+ S  +  G +  W+L E+++YH +TLLC+++I+ + 
Sbjct: 72  RERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALA 131

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTRFFD----TVNWLVHHFFQISTGQNFKLFA 126
           +LF W+   + ++ +PP + +  I      +        +N  +    +I++G++ K F 
Sbjct: 132 VLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFL 191

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
             +  +W++S++G   + L L YI  + L TVP+  DKYE+++        + +   +  
Sbjct: 192 SAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAV 251

Query: 187 LHSNFLTKIPR 194
           L +   +KIPR
Sbjct: 252 LDAKVFSKIPR 262

[Close]

BLAST of CmoCh18G010070 vs. ExPASy Swiss-Prot
Match: O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-22
Identity = 55/190 (28.95%), Postives = 105/190 (55.26%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R + +H + G GK A++ LW+ K+ S A+L   + +W+L E+++YH ++LLC++ I+ + 
Sbjct: 55  REKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALG 114

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFF----QISTGQNFKLFA 126
            LF W+    L+N   P + +  +    F     ++   ++  F     I+ G++ K F 
Sbjct: 115 GLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
           MV+  +W++S++G   N L L+YI F+ L TVP++ +K+E+++  L       +   +  
Sbjct: 175 MVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVV 234

Query: 187 LHSNFLTKIP 193
                L+KIP
Sbjct: 235 FDEKVLSKIP 244

[Close]

BLAST of CmoCh18G010070 vs. ExPASy TrEMBL
Match: A0A6J1G247 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449961 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.3e-107
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYL 60
           MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYL
Sbjct: 63  MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYL 122

Query: 61  LIITMLLLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFKL 120
           LIITMLLLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFKL
Sbjct: 123 LIITMLLLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFKL 182

Query: 121 FAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFF 180
           FAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFF
Sbjct: 183 FAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFF 242

Query: 181 HTLHSNFLTKIPRRTHIKQT 201
           HTLHSNFLTKIPRRTHIKQT
Sbjct: 243 HTLHSNFLTKIPRRTHIKQT 262

[Close]

BLAST of CmoCh18G010070 vs. ExPASy TrEMBL
Match: A0A6J1HWC4 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467461 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 187/200 (93.50%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYL 60
           MS+SG RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVW LLEVLDYHFVTLLCYL
Sbjct: 1   MSDSGVRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWFLLEVLDYHFVTLLCYL 60

Query: 61  LIITMLLLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFKL 120
           LIITMLLLFSWNKLALL+NWAPP+VHDFEISNAT T FFDT NW +HHFFQIST QNFKL
Sbjct: 61  LIITMLLLFSWNKLALLINWAPPSVHDFEISNATLTHFFDTFNWFLHHFFQISTAQNFKL 120

Query: 121 FAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFF 180
           FAMVMGSIWLVSLIGEL NSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFF
Sbjct: 121 FAMVMGSIWLVSLIGELMNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFF 180

Query: 181 HTLHSNFLTKIPRRTHIKQT 201
           HTLHSNFL+KIPRRTHIKQT
Sbjct: 181 HTLHSNFLSKIPRRTHIKQT 200

[Close]

BLAST of CmoCh18G010070 vs. ExPASy TrEMBL
Match: A0A5D3CCB1 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001260 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.1e-65
Identity = 130/201 (64.68%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 1   MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYL 60
           MSN   R  FL+SI G+GKVAELMLWK K+ESAAM+AG+SGVWL++EVLDYH +TL+C+L
Sbjct: 1   MSNPHGRRSFLYSILGNGKVAELMLWKNKKESAAMVAGMSGVWLMVEVLDYHLITLICHL 60

Query: 61  LIITMLLLFSWNKLALL-VNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFK 120
           LII MLLLF W KLA L V W+PP   D EIS+++ T  F T NW +H FFQIS G +FK
Sbjct: 61  LIILMLLLFLWKKLAFLPVPWSPPTAQDLEISDSSLTHLFQTFNWFLHSFFQISNGNDFK 120

Query: 121 LFAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTF 180
           LFAMVMGS+WL+S+IGEL +  +L+YIVF+SLQ VP+V DKYEEE +K+ S +KS MD  
Sbjct: 121 LFAMVMGSLWLLSVIGELVSLFDLVYIVFVSLQVVPVVYDKYEEEFNKVASCIKSKMDCC 180

Query: 181 FHTLHSNFLTKIPRRTHIKQT 201
           FH + SNFLTKIPR  HIKQ+
Sbjct: 181 FHFIDSNFLTKIPRWHHIKQS 201

[Close]

BLAST of CmoCh18G010070 vs. ExPASy TrEMBL
Match: A0A6J1DC54 (Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111018734 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 6.9e-65
Identity = 131/208 (62.98%), Postives = 158/208 (75.96%), Query Frame = 0


Query: 1   MSNSGD----------RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLD 60
           MS+SGD          R RF+HSI GHGKVA++MLWK K  SAA L G+S VWL+ E L+
Sbjct: 1   MSDSGDYDRRQPRLLRRHRFMHSILGHGKVADMMLWKNKTASAATLVGLSAVWLVFEGLE 60

Query: 61  YHFVTLLCYLLIITMLLLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFF 120
           Y FVTLLC+LLII MLLL  WNKLALL NWAPPNVHDF+IS +TF   FD+ NWL+ +FF
Sbjct: 61  YPFVTLLCHLLIILMLLLLVWNKLALLANWAPPNVHDFQISESTFRHLFDSFNWLLFNFF 120

Query: 121 QISTGQNFKLFAMVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVS 180
           ++S+G +FKLFAMVMG +WL+S IGEL N+LNLIYIVF+SLQTVP + DKYEEE ++L  
Sbjct: 121 EVSSGHDFKLFAMVMGGLWLISAIGELANTLNLIYIVFVSLQTVPFLYDKYEEEANQLCV 180

Query: 181 NLKSSMDTFFHTLHSNFLTKIPRRTHIK 199
            LKS   +FFH L SN L+KIPR+   K
Sbjct: 181 QLKSYFHSFFHALDSNVLSKIPRKNKNK 208

[Close]

BLAST of CmoCh18G010070 vs. ExPASy TrEMBL
Match: A0A5N6RF69 (Reticulon-like protein OS=Carpinus fangiana OX=176857 GN=FH972_015839 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.9e-40
Identity = 81/187 (43.32%), Postives = 129/187 (68.98%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R R LH+I G GKVA+++LWK  + SAA+LAG + +WLL EV +Y FVTLLC+LLIITML
Sbjct: 21  RERSLHNILGGGKVADILLWKNTKLSAAILAGFTTIWLLFEVAEYQFVTLLCHLLIITML 80

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFKLFAMVMG 126
           ++F W+K A  ++  PPN+ +  +S +T+   F  VNW ++ F++IS+G++ K F + + 
Sbjct: 81  IIFIWSKAAGFIDRRPPNIQEIRLSESTWRHLFTNVNWFLYKFYEISSGKDLKHFFLAVS 140

Query: 127 SIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHTLHSN 186
            +W++S++G   +SLNL YI FL +QT+P++ ++YE+E++   +     +  ++    SN
Sbjct: 141 CLWMLSVVGTYFSSLNLSYIAFLCIQTLPVLYERYEKEVNYFATKSNQDVKKWYRKFDSN 200

Query: 187 FLTKIPR 194
            L KIPR
Sbjct: 201 VLNKIPR 207

[Close]

BLAST of CmoCh18G010070 vs. TAIR 10
Match: AT3G18260.1 (Reticulon family protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-29
Identity = 63/193 (32.64%), Postives = 120/193 (62.18%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R R +HSIFG GKVA+++LW++ + +A ++ G+S +W L+EV++Y+F+TL+C+  + +ML
Sbjct: 26  RQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSML 85

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTR----FFDTVNWLVHHFFQISTGQNFKLFA 126
             F W+  +  +NW  P + +  +  ++F +    F    N ++     ++ G++  LF 
Sbjct: 86  FFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFF 145

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
           +   S+++VS+IG   N +NL++I F+S+QT+P++ + YE+++      L   M   +  
Sbjct: 146 LTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKK 205

Query: 187 LHSNFLTKIPRRT 196
           + +N L+KIPR T
Sbjct: 206 VDTNVLSKIPRGT 218

[Close]

BLAST of CmoCh18G010070 vs. TAIR 10
Match: AT4G23630.1 (VIRB2-interacting protein 1 )

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-25
Identity = 55/190 (28.95%), Postives = 106/190 (55.79%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R + +H + G GK A++ +WK K+ S  +L G +  W++ E+++YH +TLLC+++I+ + 
Sbjct: 76  REQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLA 135

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFF----QISTGQNFKLFA 126
           +LF W+   + +N +PP + +  I      +    +   ++  F    +I++G++ K F 
Sbjct: 136 VLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFL 195

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
           + +  +W++S++G   N L L YI  + L TVP+  DKYE+++  L       +   +  
Sbjct: 196 IAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAV 255

Query: 187 LHSNFLTKIP 193
           L    L+KIP
Sbjct: 256 LDEKVLSKIP 265

[Close]

BLAST of CmoCh18G010070 vs. TAIR 10
Match: AT4G11220.1 (VIRB2-interacting protein 2 )

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-23
Identity = 53/191 (27.75%), Postives = 104/191 (54.45%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R R +H + G GK A++ +WK K+ S  +  G +  W+L E+++YH +TLLC+++I+ + 
Sbjct: 72  RERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALA 131

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTRFFD----TVNWLVHHFFQISTGQNFKLFA 126
           +LF W+   + ++ +PP + +  I      +        +N  +    +I++G++ K F 
Sbjct: 132 VLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFL 191

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
             +  +W++S++G   + L L YI  + L TVP+  DKYE+++        + +   +  
Sbjct: 192 SAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAV 251

Query: 187 LHSNFLTKIPR 194
           L +   +KIPR
Sbjct: 252 LDAKVFSKIPR 262

[Close]

BLAST of CmoCh18G010070 vs. TAIR 10
Match: AT2G46170.1 (Reticulon family protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-23
Identity = 55/190 (28.95%), Postives = 105/190 (55.26%), Query Frame = 0


Query: 7   RPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLLIITML 66
           R + +H + G GK A++ LW+ K+ S A+L   + +W+L E+++YH ++LLC++ I+ + 
Sbjct: 55  REKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALG 114

Query: 67  LLFSWNKLALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFF----QISTGQNFKLFA 126
            LF W+    L+N   P + +  +    F     ++   ++  F     I+ G++ K F 
Sbjct: 115 GLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174

Query: 127 MVMGSIWLVSLIGELTNSLNLIYIVFLSLQTVPIVLDKYEEEIHKLVSNLKSSMDTFFHT 186
           MV+  +W++S++G   N L L+YI F+ L TVP++ +K+E+++  L       +   +  
Sbjct: 175 MVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVV 234

Query: 187 LHSNFLTKIP 193
                L+KIP
Sbjct: 235 FDEKVLSKIP 244

[Close]

BLAST of CmoCh18G010070 vs. TAIR 10
Match: AT1G68230.2 (Reticulon family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 48/147 (32.65%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 2   SNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYLL 61
           ++S  R R L+   G G+ A++M WK K+ES  +L   + +W L EV++Y F+T LC +L
Sbjct: 13  ASSSRRRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQIL 72

Query: 62  IITMLLLFSWNKL--ALLVNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFK 121
           ++ + +   W+ +  + L+   PP+++D  IS + +   F+ +NW +   + IS+G++F+
Sbjct: 73  LLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFR 132

Query: 122 LFAMVMGSIWLVSLIGELTNSLNLIYI 147
           L  + + S+W++S++G   +SL L+YI
Sbjct: 133 LLFLAVVSLWILSVVGNYFSSLTLLYI 159

The following BLAST results are available for this feature:

BLAST of CmoCh18G010070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVT6	3.1e-30	32.47	Reticulon-like protein B14 OS=Arabidopsis thaliana OX=3702 GN=RTNLB14 PE=2 SV=2	[more]
Q9LJQ5	2.2e-28	32.64	Reticulon-like protein B9 OS=Arabidopsis thaliana OX=3702 GN=RTNLB9 PE=2 SV=1	[more]
Q9SUR3	5.7e-24	28.95	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
Q9SUT9	2.4e-22	27.75	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
O82352	5.3e-22	28.95	Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1	[more]

BLAST of CmoCh18G010070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G247	7.3e-107	100.00	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449961 PE=4 SV=1	[more]
A0A6J1HWC4	1.5e-99	93.50	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467461 PE=4 SV=1	[more]
A0A5D3CCB1	3.1e-65	64.68	Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A6J1DC54	6.9e-65	62.98	Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111018734 PE=4 SV=1	[more]
A0A5N6RF69	5.9e-40	43.32	Reticulon-like protein OS=Carpinus fangiana OX=176857 GN=FH972_015839 PE=4 SV=1	[more]

BLAST of CmoCh18G010070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18260.1	1.6e-29	32.64	Reticulon family protein	[more]
AT4G23630.1	4.0e-25	28.95	VIRB2-interacting protein 1	[more]
AT4G11220.1	1.7e-23	27.75	VIRB2-interacting protein 2	[more]
AT2G46170.1	3.8e-23	28.95	Reticulon family protein	[more]
AT1G68230.2	1.1e-22	32.65	Reticulon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 158..178
None	No IPR available	PANTHER	PTHR10994:SF157	RETICULON-LIKE PROTEIN B14	coord: 6..196
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 20..171 e-value: 3.5E-37 score: 127.8
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 20..200 score: 23.393932
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 6..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010070.1	CmoCh18G010070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane