CmoCh18G009220 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G009220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich cell wall structural protein 2-like
LocationCmo_Chr18: 10387262 .. 10387804 (+)
RNA-Seq ExpressionCmoCh18G009220
SyntenyCmoCh18G009220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCACCAGGGCGATTGGTTTGTTGTTGTTGTTGTTGTTGTTGGTTTTGTTAATGGTGGACTTAACTTTTGCTGCTAGATTCTTGAAGGGCTATGGAGGAAATGGCGGCGGAGGCGGAGAAGGATCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGCGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTTCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTGGTGAAGGAGGTGGCGAAGGCGGTGGTGGAGGTGGAGGTGGAGGCTCAGGCTTCGGAAGTGGATGGGGATATGGCTCGGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGGAGTGGAGGTGGCGGCGGTGGGGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGACGGGTGGATCCGGAAATGGTTCTGGATCATGGGTCGGGTTATGGGTCTGGATATGGAGGAGGGGATGA

mRNA sequence

ATGGCCACCACCAGGGCGATTGGTTTGTTGTTGTTGTTGTTGTTGTTGGTTTTGTTAATGGTGGACTTAACTTTTGCTGCTAGATTCTTGAAGGGCTATGGAGGAAATGGCGGCGGAGGCGGAGAAGGATCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGCGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTTCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTGGTGAAGGAGGTGGCGAAGGCGGTGGTGGAGGTGGAGGTGGAGGCTCAGGCTTCGGAAGTGGATGGGGATATGGCTCGGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGGAGTGGAGGTGGCGGCGGTGGGGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGACGGGTGGATCCGGAAATGGTTCTGGATCATGGGTCGGGTTATGGGTCTGGATATGGAGGAGGGGATGA

Coding sequence (CDS)

ATGGCCACCACCAGGGCGATTGGTTTGTTGTTGTTGTTGTTGTTGTTGGTTTTGTTAATGGTGGACTTAACTTTTGCTGCTAGATTCTTGAAGGGCTATGGAGGAAATGGCGGCGGAGGCGGAGAAGGATCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGCGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTTCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTGGTGAAGGAGGTGGCGAAGGCGGTGGTGGAGGTGGAGGTGGAGGCTCAGGCTTCGGAAGTGGATGGGGATATGGCTCGGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGGAGTGGAGGTGGCGGCGGTGGGGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGACGGGTGGATCCGGAAATGGTTCTGGATCATGGGTCGGGTTATGGGTCTGGATATGGAGGAGGGGATGA

Protein sequence

MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGSGGGGGGGGGGGGGGGGSAGGMTGGSGNGSGSWVGLWVWIWRRG
Homology
BLAST of CmoCh18G009220 vs. ExPASy TrEMBL
Match: A0A6J1G1W4 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111449905 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.0e-63
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0

Query: 1   MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
           MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY
Sbjct: 1   MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60

Query: 61  GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
           GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW
Sbjct: 61  GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120

Query: 121 GYGSGYGSGGGYGSGGSGGGGGGGGGGGGGGGGSAGGMTGGSGNGSGSWVGLWVWIWRRG 180
           GYGSGYGSGGGYGSGGSGGGGGGGGGGGGGGGGSAGGMTGGSGNGSGSWVGLWVWIWRRG
Sbjct: 121 GYGSGYGSGGGYGSGGSGGGGGGGGGGGGGGGGSAGGMTGGSGNGSGSWVGLWVWIWRRG 180

BLAST of CmoCh18G009220 vs. ExPASy TrEMBL
Match: A0A6J1HWR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111467358 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 9.9e-55
Identity = 170/180 (94.44%), Postives = 170/180 (94.44%), Query Frame = 0

Query: 1   MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
           MATTRAIG  LLLLLLVLLMVDLTFAARFLKGYGGNGGGG EGSGPLSGSGYGSGNGTGY
Sbjct: 1   MATTRAIG--LLLLLLVLLMVDLTFAARFLKGYGGNGGGGEEGSGPLSGSGYGSGNGTGY 60

Query: 61  GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
           GDEGYGQYGSGGANGTGVGRGFGSGSG GYGSVGAAGP EGGGEGGG GGGGGSGFGSGW
Sbjct: 61  GDEGYGQYGSGGANGTGVGRGFGSGSGSGYGSVGAAGPSEGGGEGGGRGGGGGSGFGSGW 120

Query: 121 GYGSGYGSGGGYGSGGSGGGGGGGGGGGGGGGGSAGGMTGGSGNGSGSWVGLWVWIWRRG 180
           GYGSGYGSGGGYGSG  GGGGGGGGGGGGGGGGSAGGM GGSGN SGSWVGLWVWIWRRG
Sbjct: 121 GYGSGYGSGGGYGSG--GGGGGGGGGGGGGGGGSAGGMAGGSGNDSGSWVGLWVWIWRRG 176

BLAST of CmoCh18G009220 vs. ExPASy TrEMBL
Match: A0A6J1JQB8 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111487374 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 132/202 (65.35%), Postives = 136/202 (67.33%), Query Frame = 0

Query: 1   MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYG-------GNGGGGGEGSGPLSGSGYG 60
           MAT  AIG    L+LLVLLM DLT AARFL+GYG       G GGGGGEGS P SGSGYG
Sbjct: 1   MATNGAIG----LVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYG 60

Query: 61  SGNGTG------------YGDEGYGQYGSGG--------------ANGTGVGRGFGSGSG 120
           SG G+G            YGDEGYG YGSGG              ANG G G+GFGSGSG
Sbjct: 61  SGYGSGYGSGYGDGGYPRYGDEGYGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSGSG 120

Query: 121 FGYGSVGAAGPGEGGGEGG--GGGGGGGSGFGSGWGYGSGYGSGGGYGSGGSGGGGGGGG 168
            GYGS G  G G GGG GG  GGGGGGGSG GSG GYGSGYGSGGGYGSGG  GGGGGGG
Sbjct: 121 SGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180

BLAST of CmoCh18G009220 vs. ExPASy TrEMBL
Match: A0A1S3BGF1 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489565 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 124/204 (60.78%), Postives = 131/204 (64.22%), Query Frame = 0

Query: 1   MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYG-------GNGGGGGEGS-GPLSGSGY 60
           MATT+A+G     ++LVLLM+DL  AARF +GYG       G GGGGGEGS GP  GSGY
Sbjct: 1   MATTKAVG----FVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGY 60

Query: 61  GSGNGTG-------------YGDEGYGQYG--SGGANGTG--------------VGRGFG 120
           GSG G+G             YGDEGYG YG  SGG  G G               GRGFG
Sbjct: 61  GSGYGSGYGSGYGGEEGYSRYGDEGYGPYGRYSGGGGGGGGGGGGGGGSAIGAEYGRGFG 120

Query: 121 SGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGSGGGGGG 168
            G G GYGS G  G G GGG G GGGGGGGSG GSG GYGSGYGSGGGYGSGG  GGGGG
Sbjct: 121 MGGGSGYGSGGGVGRGGGGGGGSGGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGGGG 180

BLAST of CmoCh18G009220 vs. ExPASy TrEMBL
Match: A0A0A0KUV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 123/200 (61.50%), Postives = 132/200 (66.00%), Query Frame = 0

Query: 1   MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYG---GNGGGGGEGSGPLSGSGYGSGNG 60
           MATT+A G    L++LVLLM+DL  AARF +GYG   G GGGGGEGSGP SGSGYGSG G
Sbjct: 1   MATTKAAG----LVILVLLMLDLALAARFFRGYGGGSGGGGGGGEGSGPWSGSGYGSGYG 60

Query: 61  TGY-----GDEGYGQYG-----------SGGANGTG--------------VGRGFGSGSG 120
           +GY     G+EGY +YG           SGG  G G               GRGFG+GSG
Sbjct: 61  SGYGSGYGGEEGYSRYGDEGRYGPYGPYSGGGGGGGGGGGGGGGSAIGAEYGRGFGAGSG 120

Query: 121 FGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGSGGGGGGGGGG 168
            GYGS G  G G GGG G GGGGGGGSG GSG GYGSGYGSGGGYGSGG G GGGGGGGG
Sbjct: 121 SGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGG-GRGGGGGGGG 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G1W42.0e-63100.00glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1HWR89.9e-5594.44glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1JQB82.7e-2065.35putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... [more]
A0A1S3BGF12.0e-1560.78glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0KUV71.0e-1461.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 38..49
score: 50.0
coord: 132..142
score: 53.41
coord: 156..174
score: 32.89
coord: 102..117
score: 52.34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G009220.1CmoCh18G009220.1mRNA