CmoCh18G009130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G009130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich RNA-binding protein RZ1C-like
Location	Cmo_Chr18: 10310328 .. 10315911 (+)
RNA-Seq Expression	CmoCh18G009130
Synteny	CmoCh18G009130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCGACTTCCGATGCATATATACTCATTTTTTCATCGGCGACGCGCCGTCGAGCTGATTTTATTAATTTTTTTTTTTATAGAAATATAATTTATTTTCAGCTTCTTAAAACCCCTTTTTCCAATTTTTTTTCTATTTTTTTATTTTGAAAACAATTTCCCAATTATAATAAAAGAAATTCAATTATTGGATCAAAGTCTTTAATCTAAATAAAATAAATAAATATTTTAATCATATTAGTAATTAAAAGTAATTAGAAATATTTTATTTTTATTTATAAATTTAGATAAAAAAAATTTTAAAAGTAACTAAGAATATTTTAATAATATAAAGTTAAAAAATTAATCCTTTCCCTAAATAAATGTAATAATAATAATTCTATTTATAATTATTTATTTCAATCCTCTACTTGGAATCAAACAAATAAAATTTAAATAAAAATAAATAAATATCGTGTCTATTTACGTATTTATTTTCTAGGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGTATTCCCATTCTCTATCTTCGTTACTTTCTTCTAAATCATAGAATCAATTGTTATTTTCGGTGGGAAGCACTTGATGAATGTTGTTTCTCGTTGATTTCCGTTCAACTTTGTTCTTGGATTTCTCTAATTACTCTGGATTTTGTTTGCAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGGTTACCCTTTGTGATTTACTTTTTGATTTTTGGTTTGATTTGTGTGGCTGGAAATCGAAGAAACTGAGCACGTTGGAATGAGTAATTAATCTGTTTCTGATATGAGAAGGAAATTGAGGAGATTTTGGATTAATTCGGTTTCATTTCAGTGTTATTGATCTTATGGAAAATATAATTTCTGAATTTCCACTCCCTTCCCTCTAAATAACCTTGCCCCTGTAAGTTTAACTATTACTTTCAGCTTTTTTTTTTAACCTTTAATTTGTCTCCGTCCTCTTCTCTTTCTGATGAATGTTTTTTTCCCCTTGTGAATGAGGATGCTGTTAATGAAATTTTTGGGAAGCGGTTTAACTGTTCATGAGAAGTTGAATGCATCAAGATGCTGAAGGTCATAGGGTTGTACGTTGGTTAAGCCTTATCTGTTTAAGATCTGCTGGTTAAGAAAAAGTACTATCAGTCTGGAAATTTGGAATATGGTTGGCGGCAAACTCAATCTTGTTCTCTAGCTGATTGGGGTTTGGTGGGATTTTAGTTTGCGAACTCAGTGACTAACTTGTTCTGTGGGATAAAAGTACTCGTCATTCTTTTGCGACAGATAAATGATTTAATACCAGAGTAACTATTAACAAGTCATGTGCTGATACCTGCTCGAGCATACCTTCCTGTCTTATTGTTATTTGATGCTTTTGAAGAAGAAACTGAAGTCACTAAAATGTTGTGTATTCGAGAAATAAAATGTTCTAGTATTTGCTTGGAGAATTTTATCTTTCTCTGGATGATTATTAAACCCTCCATCTTATCCTTGGCTTACCCTACTTTCCAATGGTATGACTAAAATTTAATGATGAAGTTATGTGGTTACATGAGATGATGTACCTGGGGCAGAAGTTCTGGGCTAGACTACCATATTGACTCAGATAATTGGTTTGCTAAGTCATCTAATCACAGAAAAGTTCTGTAGACATTTGTCATTGGATGCAAAATTTTGTTGTCCAAAGATTGTTTCATACTACTGGCTGCTTCATTGTAATGTTCTCTTCGTTTCCCTATCCTTTACTGTAATCATTAGCAGAGTGAGAGATAGCTGGTTTTTCATTTGCTAGTTTCACTGGTGTTGAGAGTTGTCAGTGTTCTAAGATGAAGAATACGTTGAATTGGTGCCTCCTTTTTGGCTAAGATTTATGATACCGTACAAGGTGCAGTGTTTGGAGATCAATAGCCATTTTATCCTTTTGAGTAGGCACTGCTTCTTTGAATTCATTTTGCTGAGGTAAATCAGAGTTCCCTACTTGTCCAGGCATAATCAGAAAGTTGTTCGTATTGGTTTTTGTTCAGCAGTTGATGTGGCTAGAAATTGTACTAGCAATTCCAGGCTTAGCTGCTCAGACATTTTCCGAAGAATTGGCCAAAATGCATTTGTAGTCTTTAGTTTGACATATTTCCTTGTTGTACAAAGATAGCTGAATTGTAAATGTCAGTTTGAGTGCCTTCTCTTATCGGTTGTTGTCATCTCTGGTGAAAATGTTAAGATACTATACAGTGGACATGGAGAATGGACGTTGACGTGGTTATTATCGCCATTTGTACTTTCCAGATCTCTAAAGGCCTCTGATGCTGGATTTCTTTCTGTTTGACCAAGCATTATGGATATCTATTTGTTGGGTATAGACTGCAGCAAAGCAATTGGATCTGAAGCTAAATTTGAGTGTCTTTAGGTGCAGTGTTGCAGGTTGGGTTTTTTATGAGTTATTTAGAGGAATGGATTTAGGTTGTGGCAACCTGAGAAATTATGGAGCTTTAGTTTTCCATCCATTGGTTTTCAACCTTTTCCCGTTGTTTGAAGTTGTTCCTTGAGATCGGTCCAGAATTCTGCTATTTTGTTTTCCTTTTTTGTGGTGTGCTAGTTCCCTCATTTTATACTCGTTGACAGTATTTTGTGTTATCAGAGTTTGAATTCCTCGATTATTGATTCTATTTAAACTTAAGAGGGGTTGAATATGTACCTAGTTAAGTACGGTTGCCATGCAAGCTGTTGTCTGTAATCAAGTTTTCTAGTACATCCTCTTGTCCACAAACTGCTGACGGGATCTCAATTACAGAATGTGCTGGCATCTCCAACTTGCCTATGTCTCCTAGAGCATTCATCTTGGAAGATGTGTTGCTTAAGGATTCATCTTTCAGATTTATTCCACCATCTATTTCAGATCTCATCCCAATATGGTATTGATAGCAAGATGGCTATAAAATTCTTGTGTTTCCCTTGTGTGTTATTTGTTGAGGTTAACAAATCCCGGAATAATACACATATCCAGTGAAGTGTTTGTACTGGGTTTTTTTGAGTCAACATTGGATTTGAGTGCCATTTTGGATGCCTGACTGCACAGAACCCATGTAGCAATTTTTTTTGTGGAGTTGTTTCTTTTGAATAAAAGGGGACTAGAGGTCTAAGATACTCCCACTTCAGAAGATAGAGATAAAGACATGCAGGTTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAACAAGTAAGTTTGTCAGACTGTTTAAAATATTTTATGCTGTTATTATCAATTACTATAAGTTTTAACTTCGAACGATTTCTCTTTTAGATGTTGTACTTATCGTGCATACAGCATGTGATAGGCCGAATGTCATCACCAGCTTGTACCTGTAACTTATCTGTTACCATATTTGCTGAATGATAGTTTAATGGAGTTTTATCCTCTAATTTGTTGATCATGGCAACTGTTTGGTATTGATTTTATACCTCTTAGATTCACCTCGTTTTCAACGACTCCAACCTTCAGAGTGTTGTCACATGGGATCTTAAATACCAAAACAAAATCACCTTATATTGGTGGTTAGGGCATAGATTTCATCATGAAACATGTCATCTTTGAATATTGAGTGGATGGAATCCTGGGCTATTTATTTATCTTTCATTGTGATGGTCTTCTTCGTCACTTGATTAATGCCAGGTTTTGTTATGTTAGACAAATTTTCTTCATAATCTAGTTTCGAGCTATGCTGATGGCTTGTAGGTTTGAAGTTGTCACTTGCATTATTAGCATGAGATGTACTTTACTAGCTCTGATTTAAGTTCTATGGTCTGTTTTATTGACTGGCGTAAACTTCCTCTTTGGCGTTCCTGTAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTAATGACTGATATTTCTATGGATTTGAATTTTATTTTCTGTGTATAAAATATGTTTGTTATTTTTCTAGTCTTAAAATTTATCCTTTTAAAGTAATTATCACTAGAATACGATAAATTAACAGAAGAGTGATCCAATATCCTTTGTTTTGCTGAGTAATCACATGACTTCTCAATTAATTCCTTGCAGCATTATACTTGATCAATCCTCTCATCCCTATAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGAATGTTGACAGTTAGCAACATTATCAGTTTTATCTAGTAAGTACTACACGCACGGTGTCGTCGAACTTTTAGTCATCTAGGATATATAGTTACTGTACCATGGCCTGCCAGCTGATCGCTGCTGTTTCATCTTGCTTTCATGTATCTGATAATGGAAAGAGAACTGATTTAAGTTGACCCTGAAATGTTGAGCCGAATCTTCGAGGACTCGAAGCTCGTTCGATTCATAATATCCGTTAACGAATTAGGAAATTAGGAAATAGAAGTGTAGAAGTCAGAGGGCACCCTACATGAAAGGGGCATGAATGGCAGACCAGAAGTCTCCTCTCAGTTAAGAGTGGAAAGGTAAGAGAGGCCATTAATGGAAGAAAACTGGTATGGTTTGGCCCACAACTATTGGAATTGTCGACTTGCCTTTAATCCATCCCCCACTGTCTTGACATGTACTTGCAATGGCACTATCTTCGTCGGCTCTTGTTCATGATTTACTTGACTTTAGTTTTTGTGGAAAAATTAGAGAAGAAAGTGTAGTTTTTGATTGGTTGACTATAAAACCCACTTGCAATTTGGTGTCCTCCCATCC

mRNA sequence

ATGGCGGTCGACTTCCGATGCATATATACTCATTTTTTCATCGGCGACGCGCCGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGAATGTTGACAGTTAGCAACATTATCAGTTTTATCTAGTAAGTACTACACGCACGGTGTCGTCGAACTTTTAGTCATCTAGGATATATAGTTACTGTACCATGGCCTGCCAGCTGATCGCTGCTGTTTCATCTTGCTTTCATGTATCTGATAATGGAAAGAGAACTGATTTAAGTTGACCCTGAAATGTTGAGCCGAATCTTCGAGGACTCGAAGCTCGTTCGATTCATAATATCCGTTAACGAATTAGGAAATTAGGAAATAGAAGTGTAGAAGTCAGAGGGCACCCTACATGAAAGGGGCATGAATGGCAGACCAGAAGTCTCCTCTCAGTTAAGAGTGGAAAGGTAAGAGAGGCCATTAATGGAAGAAAACTGGTATGGTTTGGCCCACAACTATTGGAATTGTCGACTTGCCTTTAATCCATCCCCCACTGTCTTGACATGTACTTGCAATGGCACTATCTTCGTCGGCTCTTGTTCATGATTTACTTGACTTTAGTTTTTGTGGAAAAATTAGAGAAGAAAGTGTAGTTTTTGATTGGTTGACTATAAAACCCACTTGCAATTTGGTGTCCTCCCATCC

Coding sequence (CDS)

ATGGCGGTCGACTTCCGATGCATATATACTCATTTTTTCATCGGCGACGCGCCGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGA

Protein sequence

MAVDFRCIYTHFFIGDAPVLQESLEGNEGSFFEDISHYTARTRRSFLKYGVDMAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY

Homology

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BLAST of CmoCh18G009130 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.0e-73
Identity = 172/312 (55.13%), Postives = 206/312 (66.03%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           MA ++  RIFVGGLS E+T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYRGG---GYSSGGRDSSYGGGGGG 172
           MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+  S+GGGGGG
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGK-GSFGGGGGG 120

Query: 173 DRSARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL--GDSDYGDRFAG----- 232
                +DECFKCGR GHWARDCP  GGGRG     F SR     G     DR+A      
Sbjct: 121 GGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYV 180

Query: 233 DNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRF-GSSRYNNDSGRF 292
           D  RY+DDRY+G  R G RDRFD SR+ Y  RDRY SDRY    DRF G  RY+  S R+
Sbjct: 181 DRERYIDDRYDGAARYGARDRFD-SREAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRY 240

Query: 293 PVNSFGKDRGYYRDGGP-RGVDKY---ESSGPAR---NEGRSYRNRP-APYDRPSRAAG- 338
           P  S+ K R + RD  P  G D+Y    + GP R    EGR +R+R  APY+RPSR+ G 
Sbjct: 241 PPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGG 300

[Close]

BLAST of CmoCh18G009130 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 6.8e-70
Identity = 158/299 (52.84%), Postives = 191/299 (63.88%), Query Frame = 0


Query: 55  GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 114
           G  E RIFVGGLSW++TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 115 DAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQ 174
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +             +
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT-------------E 127

Query: 175 DECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FAGD 234
           DECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR          +
Sbjct: 128 DECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERERERERE 187

Query: 235 NNRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFP 294
            +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY        
Sbjct: 188 FDRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLE 247

Query: 295 VNSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 338
               G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R+
Sbjct: 248 NEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of CmoCh18G009130 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-34
Identity = 112/284 (39.44%), Postives = 152/284 (53.52%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMG-----EDMDHGYRGGGYSSGGRDSSYGGGGGG 172
           MD+AI  M+G +   R I+V+KA+P  G      D D G R  GY    R    GG GGG
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRG-RDRGYDR-DRSRPSGGRGGG 120

Query: 173 DRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRY--V 232
           D       CFKCG+PGH+AR+CP    R  GG       R    D  DR++  ++RY   
Sbjct: 121 D-------CFKCGKPGHFARECPSESSRDGGG-------RFSSKD--DRYSSKDDRYGAK 180

Query: 233 DDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGK 292
           DDRY         DR+ +  D+Y S+D    DRY    DR+G SR    S   P  S  +
Sbjct: 181 DDRYG-----AKEDRYGAKDDRYSSKD----DRYSSKDDRYG-SRDGGGSRYGPDRSGER 240

Query: 293 DRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAG 330
             G  RDGG RG    E            R+  APYDRP RA G
Sbjct: 241 AGGRSRDGGSRGAPGGE------------RHSRAPYDRP-RAGG 243

[Close]

BLAST of CmoCh18G009130 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-24
Identity = 72/150 (48.00%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 53  MAGRD-EYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRR 112
           MA  D EYR FVGGL+W   ER LE AFS+FG+++DS+I+ ++ TGR RGFGF+TF D +
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 113 GMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYR--GGGYSSGGRDSSYGGGGGGDR 172
            M DAI  M+GQ+   R I+VN+A+ + G     G R  GGGY  GG    YGGGGGG  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSR-GSGAGGGGRGGGGGYRGGG---GYGGGGGGYG 120

Query: 173 SARQDECFKCGRPGHWARDCPVGGGRGRGG 200
             R++     G  G ++     GGG G GG
Sbjct: 121 GGRREGGGYSGGGGGYSSRGGGGGGYGGGG 146

[Close]

BLAST of CmoCh18G009130 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-23
Identity = 71/150 (47.33%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 53  MAGRD-EYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRR 112
           MA  D EYR FVGGL+W   +R LE AFS++G+++DS+I+ ++ TGR RGFGF+TF D +
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 113 GMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYR--GGGYSSGGRDSSYGGGGGGDR 172
            M DAI  M+GQ+   R I+VN+A+ + G     G R  GGGY SGG    YGGGGGG  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGGRGGGGGYRSGG-GGGYGGGGGGYG 120

Query: 173 SARQDECFKCGRPGHWARDCPVGGGRGRGG 200
              ++  +  G  G+ +R    GGG G GG
Sbjct: 121 GGGREGGYSGGGGGYSSRG---GGGGGYGG 145

[Close]

BLAST of CmoCh18G009130 vs. ExPASy TrEMBL
Match: A0A6J1FZZ1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449458 PE=4 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 6.0e-162
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR 172
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR 120

Query: 173 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 232
           QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG
Sbjct: 121 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 180

Query: 233 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 292
           GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD
Sbjct: 181 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 240

Query: 293 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 338
           GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285

[Close]

BLAST of CmoCh18G009130 vs. ExPASy TrEMBL
Match: A0A6J1HNQ1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466335 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 1.3e-159
Identity = 283/285 (99.30%), Postives = 284/285 (99.65%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR 172
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSY GGGGGDRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSY-GGGGGDRSAR 120

Query: 173 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 232
           QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS+YGDRFAGDNNRYVDDRYEGG
Sbjct: 121 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSEYGDRFAGDNNRYVDDRYEGG 180

Query: 233 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 292
           GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD
Sbjct: 181 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 240

Query: 293 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 338
           GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284

[Close]

BLAST of CmoCh18G009130 vs. ExPASy TrEMBL
Match: A0A6J1G022 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449458 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 7.1e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 91  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 150
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 151 GYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 210
           GYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 61  GYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120

Query: 211 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR 270
           SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR
Sbjct: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR 180

Query: 271 YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 330
           YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 181 YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240

Query: 331 PSSFDRY 338
           PSSFDRY
Sbjct: 241 PSSFDRY 247

[Close]

BLAST of CmoCh18G009130 vs. ExPASy TrEMBL
Match: A0A1S3BGN5 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 3.5e-138
Identity = 257/288 (89.24%), Postives = 265/288 (92.01%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           MAGR+EYRIFVGGLSW+ITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR 172
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYS+GGR S   GGGGGDRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSY--GGGGGDRSAR 120

Query: 173 QDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEG 232
           QDECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLGD D GDRFAGD NRYVDDRYEG
Sbjct: 121 QDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRYEG 180

Query: 233 GGRLGDRDRFDSSR--DKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGY 292
           GGR GDRDRFDSS   +KYGSRDRYVSDRYPP GDRFGS RYNNDS RFPVN +GKDRGY
Sbjct: 181 GGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDRGY 240

Query: 293 YRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 338
           YRD GPRGVDKY S GPAR+EGRSYRNRPAPYDRPSR  GRPSSFDRY
Sbjct: 241 YRD-GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR-GGRPSSFDRY 284

[Close]

BLAST of CmoCh18G009130 vs. ExPASy TrEMBL
Match: A0A5D3CG30 (Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002430 PE=4 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 3.5e-138
Identity = 257/288 (89.24%), Postives = 265/288 (92.01%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           MAGR+EYRIFVGGLSW+ITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR 172
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYS+GGR S   GGGGGDRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSY--GGGGGDRSAR 120

Query: 173 QDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEG 232
           QDECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLGD D GDRFAGD NRYVDDRYEG
Sbjct: 121 QDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRYEG 180

Query: 233 GGRLGDRDRFDSSR--DKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGY 292
           GGR GDRDRFDSS   +KYGSRDRYVSDRYPP GDRFGS RYNNDS RFPVN +GKDRGY
Sbjct: 181 GGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDRGY 240

Query: 293 YRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 338
           YRD GPRGVDKY S GPAR+EGRSYRNRPAPYDRPSR  GRPSSFDRY
Sbjct: 241 YRD-GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR-GGRPSSFDRY 284

[Close]

BLAST of CmoCh18G009130 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 276.2 bits (705), Expect = 3.6e-74
Identity = 172/312 (55.13%), Postives = 206/312 (66.03%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           MA ++  RIFVGGLS E+T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYRGG---GYSSGGRDSSYGGGGGG 172
           MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+  S+GGGGGG
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGK-GSFGGGGGG 120

Query: 173 DRSARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL--GDSDYGDRFAG----- 232
                +DECFKCGR GHWARDCP  GGGRG     F SR     G     DR+A      
Sbjct: 121 GGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYV 180

Query: 233 DNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRF-GSSRYNNDSGRF 292
           D  RY+DDRY+G  R G RDRFD SR+ Y  RDRY SDRY    DRF G  RY+  S R+
Sbjct: 181 DRERYIDDRYDGAARYGARDRFD-SREAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRY 240

Query: 293 PVNSFGKDRGYYRDGGP-RGVDKY---ESSGPAR---NEGRSYRNRP-APYDRPSRAAG- 338
           P  S+ K R + RD  P  G D+Y    + GP R    EGR +R+R  APY+RPSR+ G 
Sbjct: 241 PPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGG 300

[Close]

BLAST of CmoCh18G009130 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 265.8 bits (678), Expect = 4.8e-71
Identity = 158/299 (52.84%), Postives = 191/299 (63.88%), Query Frame = 0


Query: 55  GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 114
           G  E RIFVGGLSW++TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 115 DAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQ 174
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +             +
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT-------------E 127

Query: 175 DECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FAGD 234
           DECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR          +
Sbjct: 128 DECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERERERERE 187

Query: 235 NNRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFP 294
            +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY        
Sbjct: 188 FDRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLE 247

Query: 295 VNSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 338
               G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R+
Sbjct: 248 NEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of CmoCh18G009130 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 265.8 bits (678), Expect = 4.8e-71
Identity = 158/299 (52.84%), Postives = 191/299 (63.88%), Query Frame = 0


Query: 55  GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 114
           G  E RIFVGGLSW++TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 115 DAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQ 174
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +             +
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT-------------E 127

Query: 175 DECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FAGD 234
           DECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR          +
Sbjct: 128 DECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERERERERE 187

Query: 235 NNRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFP 294
            +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY        
Sbjct: 188 FDRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLE 247

Query: 295 VNSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 338
               G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R+
Sbjct: 248 NEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of CmoCh18G009130 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-35
Identity = 112/284 (39.44%), Postives = 152/284 (53.52%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 112
           M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 113 MDDAIREMHGQEFGERIISVNKAEPKMG-----EDMDHGYRGGGYSSGGRDSSYGGGGGG 172
           MD+AI  M+G +   R I+V+KA+P  G      D D G R  GY    R    GG GGG
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRG-RDRGYDR-DRSRPSGGRGGG 120

Query: 173 DRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRY--V 232
           D       CFKCG+PGH+AR+CP    R  GG       R    D  DR++  ++RY   
Sbjct: 121 D-------CFKCGKPGHFARECPSESSRDGGG-------RFSSKD--DRYSSKDDRYGAK 180

Query: 233 DDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGK 292
           DDRY         DR+ +  D+Y S+D    DRY    DR+G SR    S   P  S  +
Sbjct: 181 DDRYG-----AKEDRYGAKDDRYSSKD----DRYSSKDDRYG-SRDGGGSRYGPDRSGER 240

Query: 293 DRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAG 330
             G  RDGG RG    E            R+  APYDRP RA G
Sbjct: 241 AGGRSRDGGSRGAPGGE------------RHSRAPYDRP-RAGG 243

[Close]

BLAST of CmoCh18G009130 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 108.6 bits (270), Expect = 9.8e-24
Identity = 73/178 (41.01%), Postives = 94/178 (52.81%), Query Frame = 0


Query: 58  EYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAI 117
           EYR FVGGL+W   +  L+  FS+FG +IDS+I+ ++ +GR RGFGF+TF D + M DAI
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query: 118 REMHGQEFGERIISVNKAEPK--MGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQDE 177
            EM+G+E   R+I+VN+A+ +   G     G  GGGY SGG     GGGGGG        
Sbjct: 65  EEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGG---- 124

Query: 178 CFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGG 234
               G  G+  R    G G G GG  +    R     YG    GD   Y      GGG
Sbjct: 125 ----GGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYG---GGDGGSY------GGG 165

The following BLAST results are available for this feature:

BLAST of CmoCh18G009130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWN5	5.0e-73	55.13	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
O22703	6.8e-70	52.84	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q9LIN3	2.7e-34	39.44	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
P49311	1.5e-24	48.00	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
P49310	1.3e-23	47.33	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of CmoCh18G009130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZZ1	6.0e-162	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1HNQ1	1.3e-159	99.30	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1G022	7.1e-139	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A1S3BGN5	3.5e-138	89.24	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3CG30	3.5e-138	89.24	Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuw...	[more]

BLAST of CmoCh18G009130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04280.1	3.6e-74	55.13	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	4.8e-71	52.84	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	4.8e-71	52.84	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	1.9e-35	39.44	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT4G39260.1	9.8e-24	41.01	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 60..133 e-value: 2.2E-28 score: 110.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 61..130 e-value: 4.4E-20 score: 71.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 59..137 score: 19.484827
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 175..191 e-value: 7.8E-6 score: 35.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 175..190 e-value: 1.7E-8 score: 34.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 176..190 score: 11.383412
None	No IPR available	GENE3D	4.10.60.10		coord: 171..213 e-value: 1.4E-8 score: 36.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..337
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 53..297
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 53..297
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 46..170 e-value: 9.9E-32 score: 111.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 54..167
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 158..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G009130.1	CmoCh18G009130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding