CmoCh18G008800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G008800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Annexin
Location	Cmo_Chr18: 10075875 .. 10076418 (+)
RNA-Seq Expression	CmoCh18G008800
Synteny	CmoCh18G008800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTATTTCTCTTACTTATTTGCCCTTTTCGTCATTTTTACATCAACGGTTCGAACCTTGTGCTAACATCTAACCCCTAGAGCCACGTGACGTTCCAACCTAGTTCTAATAATACAGTTTTCGGACTGAGAGTCGTTGCATATTAGAGCATGATTCGCATCATTATGTTCAATAAAAGGAATGAGGGAAGCTATGCTTAAAAGACTAAAAACCCGTTACTCGTTGCAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAACCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCATTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGA

mRNA sequence

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAACCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCATTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGA

Coding sequence (CDS)

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAACCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCATTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGA

Protein sequence

MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKFLHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP

Homology

[Close]

BLAST of CmoCh18G008800 vs. ExPASy TrEMBL
Match: A0A6J1G1A9 (uncharacterized protein LOC111449767 OS=Cucurbita moschata OX=3662 GN=LOC111449767 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60

Query: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 105

[Close]

BLAST of CmoCh18G008800 vs. ExPASy TrEMBL
Match: A0A6J1HSQ8 (uncharacterized protein LOC111466433 OS=Cucurbita maxima OX=3661 GN=LOC111466433 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.4e-47
Identity = 100/105 (95.24%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60
           MKASFILLAILLS L+LLNFCHAAAEENVAEL LGQGGGGGG GGATKN EEDEEEKFKF
Sbjct: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60

Query: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 105

[Close]

BLAST of CmoCh18G008800 vs. ExPASy TrEMBL
Match: A0A5A7SY00 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.2e-21
Identity = 68/133 (51.13%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60
           M+ + I L ILLS L+L+NFC+ AAEE+VAE   G+    G  G   KNGEE++EEKFKF
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCY-AAEESVAEFQPGK----GAAGVTAKNGEEEQEEKFKF 448

Query: 61  LHHHKPFFKKPF-KPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKPF KPIP KHP L                           KKPI VHP  
Sbjct: 449 LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 508

[Close]

BLAST of CmoCh18G008800 vs. ExPASy TrEMBL
Match: A0A5D3CG71 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.2e-21
Identity = 68/133 (51.13%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60
           M+ + I L ILLS L+L+NFC+ AAEE+VAE   G+    G  G   KNGEE++EEKFKF
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCY-AAEESVAEFQPGK----GAAGVTAKNGEEEQEEKFKF 60

Query: 61  LHHHKPFFKKPF-KPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKPF KPIP KHP L                           KKPI VHP  
Sbjct: 61  LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 120

[Close]

BLAST of CmoCh18G008800 vs. ExPASy TrEMBL
Match: E5GCK5 (Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.2e-21
Identity = 68/133 (51.13%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60
           M+ + I L ILLS L+L+NFC+ AAEE+VAE   G+    G  G   KNGEE++EEKFKF
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCY-AAEESVAEFQPGK----GAAGVTAKNGEEEQEEKFKF 438

Query: 61  LHHHKPFFKKPF-KPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKPF KPIP KHP L                           KKPI VHP  
Sbjct: 439 LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 498

The following BLAST results are available for this feature:

BLAST of CmoCh18G008800 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G008800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1A9	1.9e-50	100.00	uncharacterized protein LOC111449767 OS=Cucurbita moschata OX=3662 GN=LOC1114497...	[more]
A0A6J1HSQ8	4.4e-47	95.24	uncharacterized protein LOC111466433 OS=Cucurbita maxima OX=3661 GN=LOC111466433...	[more]
A0A5A7SY00	4.2e-21	51.13	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 S...	[more]
A0A5D3CG71	4.2e-21	51.13	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 ...	[more]
E5GCK5	4.2e-21	51.13	Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of CmoCh18G008800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G008800.1	CmoCh18G008800.1	mRNA