CmoCh18G008790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G008790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribonuclease T(2)
Location	Cmo_Chr18: 10060506 .. 10061366 (+)
RNA-Seq Expression	CmoCh18G008790
Synteny	CmoCh18G008790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAGGTGCATATCCTTCCACACTATAAGTATGGATGGGTTGCTGCCATGTTCATCACCCCATCTCCCTCTCCTTCTTTCTCTACTTCTTCTGCTATGGCCTTCATTTCCTCCAATCTTCTCCCCATTTGCATCTCACTCCTTTTGTTTTTCAATTCTGTGTATTCCTTCGACTACTTTCAAATGGTTTTACAATGGCCGCCCGCTACTTGTAAGACTAAAGATGTAGTCTGTTATACTGCACCTCCTAAGATGTTCACCATACATGGTCTCTGGCCTAGTTATTTCTCGGGGGATATGGTTGTTTGTACTTCTAAGCCAAAATTGGACCCAACAAAACAGGTATCTTCTGTGTCATTACAACTCATTAGTGTTTATGATTTGATTTAATTTAATTAGTGCATCCTAAGTGGATTTTTTATTTTTGTTTACAGCTTGCTCCACTCAAAACACAGCTAGAAATGTATTGGCCAGACGTGATAAGCGGCGACCATGAAACATTTTGGAAACACGAATGGGATAAGCACGGTAAATGTTCATTATTTACCCAATATCAATATTTTGAAGTATCTCTCCGTATTCGATTGAACTCTACCTTCAATATAATTAGCCATCTTGAATGCCGCCCATCTTAACCCGGATGTCAACATATCTCTGAATTATCTTGTTGTTGAAAATGCTATTAAGATTGCAATAGGAAAAAGGCCTGCCCTCCACTGCAACAAGGATACATCTAAACAGAAACAATTATTCGAAATTATTTTATGTTTTGATACGGATGCGGTGACTTTGATCGATTGTAGCCCAGAACTTAGAACAAGTTGCATAACTCCTTCCACGATTCACGATGAATTGTAG

mRNA sequence

ATGAGTGAGGTGCATATCCTTCCACACTATAAGTATGGATGGGTTGCTGCCATGTTCATCACCCCATCTCCCTCTCCTTCTTTCTCTACTTCTTCTGCTATGGCCTTCATTTCCTCCAATCTTCTCCCCATTTGCATCTCACTCCTTTTGTTTTTCAATTCTGTGTATTCCTTCGACTACTTTCAAATGGTTTTACAATGGCCGCCCGCTACTTGTAAGACTAAAGATGTAGTCTGTTATACTGCACCTCCTAAGATGTTCACCATACATGGTCTCTGGCCTAGTTATTTCTCGGGGGATATGGTTGTTTGTACTTCTAAGCCAAAATTGGACCCAACAAAACAGCTTGCTCCACTCAAAACACAGCTAGAAATGTATTGGCCAGACGTGATAAGCGGCGACCATGAAACATTTTGGAAACACGAATGGGATAAGCACGCCATCTTGAATGCCGCCCATCTTAACCCGGATGTCAACATATCTCTGAATTATCTTGTTGTTGAAAATGCTATTAAGATTGCAATAGGAAAAAGGCCTGCCCTCCACTGCAACAAGGATACATCTAAACAGAAACAATTATTCGAAATTATTTTATGTTTTGATACGGATGCGGTGACTTTGATCGATTGTAGCCCAGAACTTAGAACAAGTTGCATAACTCCTTCCACGATTCACGATGAATTGTAG

Coding sequence (CDS)

ATGAGTGAGGTGCATATCCTTCCACACTATAAGTATGGATGGGTTGCTGCCATGTTCATCACCCCATCTCCCTCTCCTTCTTTCTCTACTTCTTCTGCTATGGCCTTCATTTCCTCCAATCTTCTCCCCATTTGCATCTCACTCCTTTTGTTTTTCAATTCTGTGTATTCCTTCGACTACTTTCAAATGGTTTTACAATGGCCGCCCGCTACTTGTAAGACTAAAGATGTAGTCTGTTATACTGCACCTCCTAAGATGTTCACCATACATGGTCTCTGGCCTAGTTATTTCTCGGGGGATATGGTTGTTTGTACTTCTAAGCCAAAATTGGACCCAACAAAACAGCTTGCTCCACTCAAAACACAGCTAGAAATGTATTGGCCAGACGTGATAAGCGGCGACCATGAAACATTTTGGAAACACGAATGGGATAAGCACGCCATCTTGAATGCCGCCCATCTTAACCCGGATGTCAACATATCTCTGAATTATCTTGTTGTTGAAAATGCTATTAAGATTGCAATAGGAAAAAGGCCTGCCCTCCACTGCAACAAGGATACATCTAAACAGAAACAATTATTCGAAATTATTTTATGTTTTGATACGGATGCGGTGACTTTGATCGATTGTAGCCCAGAACTTAGAACAAGTTGCATAACTCCTTCCACGATTCACGATGAATTGTAG

Protein sequence

MSEVHILPHYKYGWVAAMFITPSPSPSFSTSSAMAFISSNLLPICISLLLFFNSVYSFDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLAPLKTQLEMYWPDVISGDHETFWKHEWDKHAILNAAHLNPDVNISLNYLVVENAIKIAIGKRPALHCNKDTSKQKQLFEIILCFDTDAVTLIDCSPELRTSCITPSTIHDEL

Homology

[Close]

BLAST of CmoCh18G008790 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-22
Identity = 70/220 (31.82%), Postives = 100/220 (45.45%), Query Frame = 0


Query: 29  STSSAMAFISSNLLPICISLLLFFNSVYSFDYFQMVLQWPPATCKTKDVVCYTA---PPK 88
           S S+   F+   ++  C+S+L   N+   FD+F  V QWP + C TK   CY     P  
Sbjct: 3   SNSAFSLFLILLIITQCLSVL---NAAKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAA 62

Query: 89  MFTIHGLWPSYFSGDMVVCTSKPKLDPT-----KQLAPLKTQLEMYWPDVI--SGDHETF 148
            F IHGLWP+   G     T     DP       Q++ L + ++  WP +   SG   TF
Sbjct: 63  DFGIHGLWPNNNDG-----TYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTF 122

Query: 149 WKHEWDKH----------------------------AILNAAHLNPDVNISLNYLVVENA 208
           W HEW+KH                            +IL  A ++PD   S + + + NA
Sbjct: 123 WSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPD-GESYDLVNIRNA 182

Query: 209 IKIAIGKRPALHCNKDTSKQKQLFEIILCFDTDAVTLIDC 211
           IK AIG  P + CN D S   QL+++ +C D    +LI+C
Sbjct: 183 IKSAIGYTPWIQCNVDQSGNSQLYQVYICVDGSGSSLIEC 213

[Close]

BLAST of CmoCh18G008790 vs. ExPASy Swiss-Prot
Match: P42813 (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 68/210 (32.38%), Postives = 95/210 (45.24%), Query Frame = 0


Query: 41  LLPIC-ISLLLFFNSVYS-------FDYFQMVLQWPPATCKTKDVVCYT---APPKMFTI 100
           L  +C ISLL+   SV+S       FD+F  V QWP + C T+   CY     P   F I
Sbjct: 5   LASLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGI 64

Query: 101 HGLWPSYFSGDMVVCTSKPKLDPTKQLAPLKTQLEMYWPDVI--SGDHETFWKHEWDKH- 160
           HGLWP+Y  G         K   +  ++ L T ++  WP +   SG  E FW+HEW+KH 
Sbjct: 65  HGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHG 124

Query: 161 --------------------------AILNAAHLNPDVNISLNYLVVENAIKIAIGKRPA 211
                                       L  A +NPD   S +   + ++IK +IG  P 
Sbjct: 125 TCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPD-GKSYSLESIRDSIKESIGFTPW 184

[Close]

BLAST of CmoCh18G008790 vs. ExPASy Swiss-Prot
Match: P42815 (Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.1e-21
Identity = 62/186 (33.33%), Postives = 83/186 (44.62%), Query Frame = 0


Query: 58  FDYFQMVLQWPPATCKTKDVVCYT---APPKMFTIHGLWPSYFSGDMVV-CTSKPKLDPT 117
           FD+F  VLQWP A C ++   CY     P   F IHGLWP+Y +G     C    + D  
Sbjct: 22  FDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDL 81

Query: 118 KQLAPLKTQLEMYWPDVI--SGDHETFWKHEWDKHA------------------------ 177
           + ++ L + L+  WP +   S D   FW HEW+KH                         
Sbjct: 82  R-VSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQHDYFEAGLKLKQKAN 141

Query: 178 ---ILNAAHLNPDVNISLNYLVVENAIKIAIGKRPALHCNKDTSKQKQLFEIILCFDTDA 211
               L  A + PD         +EN IK  +G  P + CNKD+S   QL++I LC DT A
Sbjct: 142 LLHALTNAGIKPDDKF-YEMKDIENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTSA 201

[Close]

BLAST of CmoCh18G008790 vs. ExPASy Swiss-Prot
Match: P23540 (Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-20
Identity = 59/182 (32.42%), Postives = 84/182 (46.15%), Query Frame = 0


Query: 58  FDYFQMVLQWPPATCK-TKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQL 117
           FD F  V QWPPA C   K   C  +  + FTIHGLWP      +  C      D TK +
Sbjct: 1   FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITK-I 60

Query: 118 APLKTQLEMYWPDVISGDHETFWKHEWDKHAILN------AAHLNPDVNISLNYLV---- 177
           + L++QL   WP+V+  +++ FW HEW KH   +      AA+    V++  NY +    
Sbjct: 61  SHLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGAL 120

Query: 178 ----------------VENAIKIAIGKRPALHCNKD-TSKQKQLFEIILCFDTDAVTLID 212
                           ++  +K   GK P L C  D  +K   L +++ CF  D  TLID
Sbjct: 121 RPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLID 180

[Close]

BLAST of CmoCh18G008790 vs. ExPASy Swiss-Prot
Match: Q40966 (Ribonuclease S-4 OS=Pyrus pyrifolia OX=3767 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-19
Identity = 61/200 (30.50%), Postives = 94/200 (47.00%), Query Frame = 0


Query: 44  ICISLLLFFNSVYSFDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSG-DMV 103
           + + +L+F  S   FDYFQ   Q+ PA C +    C     K+FT+HGLWPS  +G D  
Sbjct: 14  LSLIVLIFSASTVGFDYFQFTQQYQPAVCNSNPTPCNDPTDKLFTVHGLWPSNRNGPDPE 73

Query: 104 VCTSKPKLDPTKQLAPLKTQLEMYWPDVIS-GDHETFWKHEWDKH--------------- 163
            C  K     ++++  +  QLE+ WP+V++  DH  FW+ EW KH               
Sbjct: 74  KC--KTTTMNSQKIGNMTAQLEIIWPNVLNRSDHVGFWEREWLKHGTCGYPTIKDDMHYL 133

Query: 164 ---------------AILNAAHLNPDVNISLNYLVVENAIKIAIGK-RPALHCNKDTSKQ 211
                          AIL+ A + P+ N + + + +ENAI+      +P   C K+T   
Sbjct: 134 KTVIKMYITQKQNVSAILSKATIQPNGN-NRSLVDIENAIRSGNNNTKPKFKCQKNTRTT 193

[Close]

BLAST of CmoCh18G008790 vs. ExPASy TrEMBL
Match: A0A6J1FZP3 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.4e-82
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSEVHILPHYKYGWVAAMFITPSPSPSFSTSSAMAFISSNLLPICISLLLFFNSVYSFDY 60
           MSEVHILPHYKYGWVAAMFITPSPSPSFSTSSAMAFISSNLLPICISLLLFFNSVYSFDY
Sbjct: 1   MSEVHILPHYKYGWVAAMFITPSPSPSFSTSSAMAFISSNLLPICISLLLFFNSVYSFDY 60

Query: 61  FQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLAPLK 120
           FQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLAPLK
Sbjct: 61  FQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLAPLK 120

Query: 121 TQLEMYWPDVISGDHETFWKHEWDKH 147
           TQLEMYWPDVISGDHETFWKHEWDKH
Sbjct: 121 TQLEMYWPDVISGDHETFWKHEWDKH 146

[Close]

BLAST of CmoCh18G008790 vs. ExPASy TrEMBL
Match: A0A6J1FZQ4 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.4e-82
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSEVHILPHYKYGWVAAMFITPSPSPSFSTSSAMAFISSNLLPICISLLLFFNSVYSFDY 60
           MSEVHILPHYKYGWVAAMFITPSPSPSFSTSSAMAFISSNLLPICISLLLFFNSVYSFDY
Sbjct: 1   MSEVHILPHYKYGWVAAMFITPSPSPSFSTSSAMAFISSNLLPICISLLLFFNSVYSFDY 60

Query: 61  FQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLAPLK 120
           FQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLAPLK
Sbjct: 61  FQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLAPLK 120

Query: 121 TQLEMYWPDVISGDHETFWKHEWDKH 147
           TQLEMYWPDVISGDHETFWKHEWDKH
Sbjct: 121 TQLEMYWPDVISGDHETFWKHEWDKH 146

[Close]

BLAST of CmoCh18G008790 vs. ExPASy TrEMBL
Match: A0A6J1EXD5 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 7.9e-41
Identity = 94/191 (49.21%), Postives = 111/191 (58.12%), Query Frame = 0


Query: 58  FDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTKQLA 117
           FDYFQMV QWPPATC    V CY  PP MFTIHGLWPS +S   +VC  +P  +P  Q+A
Sbjct: 24  FDYFQMVQQWPPATC--SGVRCYANPPAMFTIHGLWPSNYSNVPLVCAGQP-FNPA-QIA 83

Query: 118 PLKTQLEMYWPDVISGDHETFWKHEWDKH-----------------------------AI 177
            L  QL  YWPDVISG+++ FWKHEWD H                             AI
Sbjct: 84  TLVPQLNTYWPDVISGNNQRFWKHEWDSHGTCSDPPFNQLQYFQTTLNIRTNHNYDLLAI 143

Query: 178 LNAAHLNPDVNISLNYLVVENAIKIAIGKRPALHCNKDT-SKQKQLFEIILCFDTDAVTL 219
           LN A L P    +  Y  +E AI+ A GK+P L CNK+  SK+KQLFEIILCFD + VTL
Sbjct: 144 LNTAGLGPTATNTRQYGAIEGAIQAATGKKPGLRCNKNAQSKKKQLFEIILCFDKNGVTL 203

[Close]

BLAST of CmoCh18G008790 vs. ExPASy TrEMBL
Match: A0A6J1IAR7 (Ribonuclease T(2) OS=Cucurbita maxima OX=3661 GN=LOC111472844 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 96/213 (45.07%), Postives = 116/213 (54.46%), Query Frame = 0


Query: 40  NLLPICISL----LLFFNSVYSFDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPS 99
           N  P  +S+    LL       FDYFQMV QWPPATC    V CY  PP MFTIHGLWPS
Sbjct: 3   NKAPFIVSIFNLVLLTIGVKAQFDYFQMVQQWPPATC--SGVRCYANPPAMFTIHGLWPS 62

Query: 100 YFSGDMVVCTSKPKLDPTKQLAPLKTQLEMYWPDVISGDHETFWKHEWDKH--------- 159
            +S    VC  +P      Q+A L+ QL  YWPDVI+G+++ FWKHEWD H         
Sbjct: 63  TYSNVPPVCAGQP--FDRAQIATLEPQLNTYWPDVINGNNQRFWKHEWDNHGTCSDPPFN 122

Query: 160 --------------------AILNAAHLNPDVNISLNYLVVENAIKIAIGKRPALHCNKD 219
                               AILN A L P    +  Y  +E AI+ A GK+P L CNK+
Sbjct: 123 QLQYFQTTLNIRTNHNYDLLAILNTAGLGPTATTTRQYQAIEGAIQAATGKKPGLRCNKN 182

[Close]

BLAST of CmoCh18G008790 vs. ExPASy TrEMBL
Match: A0A6J1F837 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111441728 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-38
Identity = 93/207 (44.93%), Postives = 118/207 (57.00%), Query Frame = 0


Query: 44  ICISLLLFFNSVYSFDYFQMVLQWPPATCKTKDVVCYTAPPKMFTIHGLWPSYFSGDMVV 103
           + + L+L  N+   FDYFQMV QWPPA C +  V C+  PP MFTIHGLWPS +S   +V
Sbjct: 14  VFVVLILCVNA--QFDYFQMVQQWPPAKCSSVKVRCHVQPPTMFTIHGLWPSNYSNARLV 73

Query: 104 CTSKPKLDPTKQLAPLKTQLEMYWPDVISGDHETFWKHEWDKH----------------- 163
           C  +P  +PT Q+A L+ QL  YWPDVI G ++ FW+HEWD+H                 
Sbjct: 74  CAPQP-FNPT-QIAALRPQLNTYWPDVIQGKNQQFWQHEWDRHGICSNPPFNQLQYFQIT 133

Query: 164 ------------AILNAAHLNP-DVNISLNYLVVENAIKIAIGKRPALHC--NKDTSKQK 219
                        ILNAA L P D NI   Y  +E AI+ A GK+P L C  N  + ++K
Sbjct: 134 LNIRTNHSYDLLTILNAAGLGPSDTNIR-EYKDIEGAIQAATGKKPGLRCNINAQSKEKK 193

[Close]

BLAST of CmoCh18G008790 vs. TAIR 10
Match: AT1G14220.1 (Ribonuclease T2 family protein )

HSP 1 Score: 108.2 bits (269), Expect = 8.7e-24
Identity = 67/199 (33.67%), Postives = 85/199 (42.71%), Query Frame = 0


Query: 58  FDYFQMVLQWPPATCKTKDVVCYTA---PPKMFTIHGLWPSYFSGDMVVCTSKPKLDPTK 117
           FD+F  VLQWP A C T    CY     P   F IHGLWP+Y  G               
Sbjct: 28  FDFFYFVLQWPGAYCDTSRACCYPTSGKPAADFGIHGLWPNYNGGSWPSNCDPDSQFDRS 87

Query: 118 QLAPLKTQLEMYWPDVISGDHE--TFWKHEWDKHA------------------------- 177
           Q++ L + L+  WP +    +E   FW+HEW+KH                          
Sbjct: 88  QISDLVSSLKKNWPTLSCPSNEGFNFWEHEWEKHGTCSESVMDQHEYFENALKLKQKANL 147

Query: 178 --ILNAAHLNPDVNISLNYLVVENAIKIAIGKRPALHCNKDTSKQKQLFEIILCFDTDAV 225
             IL  + +NPD     N   + NAIK  IG  P + CNKD  +  QL +I +C DT   
Sbjct: 148 LQILKNSGINPDDGF-YNLDKITNAIKDGIGFTPGIECNKDPERNAQLHQIYICVDTSGT 207

[Close]

BLAST of CmoCh18G008790 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 )

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-22
Identity = 68/210 (32.38%), Postives = 95/210 (45.24%), Query Frame = 0


Query: 41  LLPIC-ISLLLFFNSVYS-------FDYFQMVLQWPPATCKTKDVVCYT---APPKMFTI 100
           L  +C ISLL+   SV+S       FD+F  V QWP + C T+   CY     P   F I
Sbjct: 5   LASLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGI 64

Query: 101 HGLWPSYFSGDMVVCTSKPKLDPTKQLAPLKTQLEMYWPDVI--SGDHETFWKHEWDKH- 160
           HGLWP+Y  G         K   +  ++ L T ++  WP +   SG  E FW+HEW+KH 
Sbjct: 65  HGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHG 124

Query: 161 --------------------------AILNAAHLNPDVNISLNYLVVENAIKIAIGKRPA 211
                                       L  A +NPD   S +   + ++IK +IG  P 
Sbjct: 125 TCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPD-GKSYSLESIRDSIKESIGFTPW 184

[Close]

BLAST of CmoCh18G008790 vs. TAIR 10
Match: AT1G26820.1 (ribonuclease 3 )

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-22
Identity = 62/186 (33.33%), Postives = 83/186 (44.62%), Query Frame = 0


Query: 58  FDYFQMVLQWPPATCKTKDVVCYT---APPKMFTIHGLWPSYFSGDMVV-CTSKPKLDPT 117
           FD+F  VLQWP A C ++   CY     P   F IHGLWP+Y +G     C    + D  
Sbjct: 22  FDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDL 81

Query: 118 KQLAPLKTQLEMYWPDVI--SGDHETFWKHEWDKHA------------------------ 177
           + ++ L + L+  WP +   S D   FW HEW+KH                         
Sbjct: 82  R-VSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQHDYFEAGLKLKQKAN 141

Query: 178 ---ILNAAHLNPDVNISLNYLVVENAIKIAIGKRPALHCNKDTSKQKQLFEIILCFDTDA 211
               L  A + PD         +EN IK  +G  P + CNKD+S   QL++I LC DT A
Sbjct: 142 LLHALTNAGIKPDDKF-YEMKDIENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTSA 201

[Close]

BLAST of CmoCh18G008790 vs. TAIR 10
Match: AT1G14210.1 (Ribonuclease T2 family protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-17
Identity = 62/218 (28.44%), Postives = 91/218 (41.74%), Query Frame = 0


Query: 44  ICISLLLFFNSVYS-------FDYFQMVLQWPPATCKTKDVVCYTAPPKM------FTIH 103
           I +SLL+  + V S       F++F  V  WP A C ++   C   PP        F IH
Sbjct: 5   IIVSLLILQSLVVSSSQTEPDFNFFYWVNYWPGAICDSQKGCC---PPTKGNTASDFIIH 64

Query: 104 GLWPSYFSGDMVVCTSKPKLDPTKQLAPLKTQLEMYWPD----VISGDHETFWKHEWDKH 163
           GLWP + +G       +  L    +++ L  Q+E  W +        +    W+HEW+KH
Sbjct: 65  GLWPQFNNGTWPAFCDQTNLFDISKISDLVCQMEKKWTEWGVWACPSNETNLWEHEWNKH 124

Query: 164 AI----LNAAHLNPDVNIS-------LNYLV---------------VENAIKIAIGKRPA 219
                 +   H     N+        LN L+               ++NAIK AIG  P 
Sbjct: 125 GTCVQSIFDQHSYFRTNLKFKHKVHLLNILIQKGIKPNDGFYSLDEIKNAIKCAIGFAPG 184

The following BLAST results are available for this feature:

BLAST of CmoCh18G008790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80022	1.6e-22	31.82	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]
P42813	3.0e-21	32.38	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1	[more]
P42815	5.1e-21	33.33	Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1	[more]
P23540	1.1e-20	32.42	Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1	[more]
Q40966	2.2e-19	30.50	Ribonuclease S-4 OS=Pyrus pyrifolia OX=3767 PE=1 SV=2	[more]

BLAST of CmoCh18G008790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZP3	1.4e-82	100.00	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1	[more]
A0A6J1FZQ4	1.4e-82	100.00	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111449386 PE=3 SV=1	[more]
A0A6J1EXD5	7.9e-41	49.21	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1	[more]
A0A6J1IAR7	1.1e-39	45.07	Ribonuclease T(2) OS=Cucurbita maxima OX=3661 GN=LOC111472844 PE=3 SV=1	[more]
A0A6J1F837	1.3e-38	44.93	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111441728 PE=3 SV=1	[more]

BLAST of CmoCh18G008790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14220.1	8.7e-24	33.67	Ribonuclease T2 family protein	[more]
AT2G02990.1	2.1e-22	32.38	ribonuclease 1	[more]
AT1G26820.1	3.7e-22	33.33	ribonuclease 3	[more]
AT1G14210.1	3.5e-17	28.44	Ribonuclease T2 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 52..148 e-value: 1.2E-28 score: 102.4
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 149..227 e-value: 1.1E-9 score: 40.5
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 53..218
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 148..210 e-value: 8.7E-6 score: 26.0 coord: 58..147 e-value: 1.5E-22 score: 80.7
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 50..146
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 148..218
None	No IPR available	PANTHER	PTHR11240:SF49	RIBONUCLEASE 3	coord: 148..218
None	No IPR available	PANTHER	PTHR11240:SF49	RIBONUCLEASE 3	coord: 50..146
IPR018188	Ribonuclease T2, His active site 1	PROSITE	PS00530	RNASE_T2_1	coord: 87..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G008790.1	CmoCh18G008790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding