CmoCh18G008590 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G008590
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor IIIA-like
LocationCmo_Chr18: 9916954 .. 9918208 (+)
RNA-Seq ExpressionCmoCh18G008590
SyntenyCmoCh18G008590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATGCAGAGGCCATATATTTGTACCGTAGATGGCTGTGACGCGAGTTATAGAAGAAAGGATCATTTAACTCGACACCTTCTCCAGCATCAAGGAATGATATTCAAGTGTCCTATCGAAAATTGTAGCCGTGAATTTGCATATCTATCCTGTCTGAATCGACACTTGAAAGTTTTCCATGAAGGTGATACTCCTGAAGTTGAATGTCAGAAGCGTTTTGTTTGCCCGGAAGATGAATGTGGAAAGGAATTCAGATATGCCTCTCAACTGCAAAAACATGAAGATTCGCACGGTTGGTCCCGATCTTTTCTATAAGAACTTAATTTTGACTGTTTGACTCGATGTATTGTGTATTAATTTCAATATTTACTGTACCGTAGCTAAGCTAGACTCGGTAGAGGCATGCTGTTCTGAACTGGGTTGCATGAAAACATTTACGAACAAGCAATGCCTTAAGGCTCATATGCAGTCCTGCCACCAATACATTGAATGTGAGATTTGTGGTGAAAAGAAATTGAGAAAGAACATCAAGCAACATCTCCGACAAAAGCATGAAAGTGATGGTCCGCAAACGACAATTCGATGCACGCACGAGGGCTGCAGTAATGTCTTTTCAACAGTAAGTAGCTCAAACTCTGCAAACATCTCCGAGCTTTGTTCTTCTTTAGACTGGAACGATCTTTGATGTGCTCCTTCGTTATTGATCTCCCAGAGTTCGAATCTCCGTCAACACGTAAAGGTCGTGCATCTGGGACAAAAACCTTTTGCTTGTTGTTTCCCTGGTTGTGGCATGAGATTTGGGTACAAGCATGTTAGAGACAATCACGAGAAAAGTGGCCAGCATGTCTACACCGATGTAAGTTAGCATTTAGCCATCGTTGCGTATTCGTATACTTTTGACCTTTAGATAGATGATTAACGGAGCGTTTTTCTCTGGAATCAGGGGGATTTTGAAGTAGCTGACGAGCGATTCCGCTCGAAGCCAAGGGGTGGGAGAAAAAGGGTTTGTCCAACTGTTGAAATGCTTATACGGAAGAGGGTTACCCCCCCAACTGAGCTGAATTTCATGATGGATGAGGACTGTTAGTATGTCCCTACTAGAAAAGTACCCAACCCAACCCAGCCAGACCCCTTGTTGATACTAATCCTACGCTCATTAGAAGTATTTTGATAGCTTATGACTGATAGAATCTGTATGTATAATCCCGCGTTCATATTAGAAGTATTTTGATAGCTTATGAATGATAGAATC

mRNA sequence

ATGTTAATGCAGAGGCCATATATTTGTACCGTAGATGGCTGTGACGCGAGTTATAGAAGAAAGGATCATTTAACTCGACACCTTCTCCAGCATCAAGGAATGATATTCAAGTGTCCTATCGAAAATTGTAGCCGTGAATTTGCATATCTATCCTGTCTGAATCGACACTTGAAAGTTTTCCATGAAGGTGATACTCCTGAAGTTGAATGTCAGAAGCGTTTTGTTTGCCCGGAAGATGAATGTGGAAAGGAATTCAGATATGCCTCTCAACTGCAAAAACATGAAGATTCGCACGCTAAGCTAGACTCGGTAGAGGCATGCTGTTCTGAACTGGGTTGCATGAAAACATTTACGAACAAGCAATGCCTTAAGGCTCATATGCAGTCCTGCCACCAATACATTGAATGTGAGATTTGTGGTGAAAAGAAATTGAGAAAGAACATCAAGCAACATCTCCGACAAAAGCATGAAAGTGATGGTCCGCAAACGACAATTCGATGCACGCACGAGGGCTGCAGTAATGTCTTTTCAACAAGTTCGAATCTCCGTCAACACGTAAAGGTCGTGCATCTGGGACAAAAACCTTTTGCTTGTTGTTTCCCTGGTTGTGGCATGAGATTTGGGTACAAGCATGTTAGAGACAATCACGAGAAAAGTGGCCAGCATGTCTACACCGATGGGGATTTTGAAGTAGCTGACGAGCGATTCCGCTCGAAGCCAAGGGGTGGGAGAAAAAGGGTTTGTCCAACTGTTGAAATGCTTATACGGAAGAGGGTTACCCCCCCAACTGAGCTGAATTTCATGATGGATGAGGACTGTTAGTATGTCCCTACTAGAAAAGTACCCAACCCAACCCAGCCAGACCCCTTGTTGATACTAATCCTACGCTCATTAGAAGTATTTTGATAGCTTATGACTGATAGAATCTGTATGTATAATCCCGCGTTCATATTAGAAGTATTTTGATAGCTTATGAATGATAGAATC

Coding sequence (CDS)

ATGTTAATGCAGAGGCCATATATTTGTACCGTAGATGGCTGTGACGCGAGTTATAGAAGAAAGGATCATTTAACTCGACACCTTCTCCAGCATCAAGGAATGATATTCAAGTGTCCTATCGAAAATTGTAGCCGTGAATTTGCATATCTATCCTGTCTGAATCGACACTTGAAAGTTTTCCATGAAGGTGATACTCCTGAAGTTGAATGTCAGAAGCGTTTTGTTTGCCCGGAAGATGAATGTGGAAAGGAATTCAGATATGCCTCTCAACTGCAAAAACATGAAGATTCGCACGCTAAGCTAGACTCGGTAGAGGCATGCTGTTCTGAACTGGGTTGCATGAAAACATTTACGAACAAGCAATGCCTTAAGGCTCATATGCAGTCCTGCCACCAATACATTGAATGTGAGATTTGTGGTGAAAAGAAATTGAGAAAGAACATCAAGCAACATCTCCGACAAAAGCATGAAAGTGATGGTCCGCAAACGACAATTCGATGCACGCACGAGGGCTGCAGTAATGTCTTTTCAACAAGTTCGAATCTCCGTCAACACGTAAAGGTCGTGCATCTGGGACAAAAACCTTTTGCTTGTTGTTTCCCTGGTTGTGGCATGAGATTTGGGTACAAGCATGTTAGAGACAATCACGAGAAAAGTGGCCAGCATGTCTACACCGATGGGGATTTTGAAGTAGCTGACGAGCGATTCCGCTCGAAGCCAAGGGGTGGGAGAAAAAGGGTTTGTCCAACTGTTGAAATGCTTATACGGAAGAGGGTTACCCCCCCAACTGAGCTGAATTTCATGATGGATGAGGACTGTTAG

Protein sequence

MLMQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHEGDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQCLKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNLRQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRGGRKRVCPTVEMLIRKRVTPPTELNFMMDEDC
Homology
BLAST of CmoCh18G008590 vs. ExPASy Swiss-Prot
Match: Q84MZ4 (Transcription factor IIIA OS=Arabidopsis thaliana OX=3702 GN=TFIIIA PE=1 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.9e-86
Identity = 160/314 (50.96%), Postives = 192/314 (61.15%), Query Frame = 0

Query: 3   MQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFH- 62
           ++R + C VD C ASYRRKDHL RHLL H+G +FKCP ENC  EF+    + RH+K +H 
Sbjct: 90  LERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHS 149

Query: 63  --------------------------------------------------EGDTPEVEC- 122
                                                              GD+   EC 
Sbjct: 150 NDNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKENEGNGGSGKDNNGNGDSQPAECS 209

Query: 123 --QKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQCLKAHMQ 182
             QK+ VC E  CGK F+Y SQLQKH+DSH KLDSVEA CSE GCMK FTN++CLK+H++
Sbjct: 210 TGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIR 269

Query: 183 SCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNLRQHVKV 242
           SCHQ+I CEICG K L+KNIK+HLR  H+ D     I+C  EGCS+ FS +SNL++H+K 
Sbjct: 270 SCHQHINCEICGSKHLKKNIKRHLR-THDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKA 329

Query: 243 VHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRGGRKRVC 263
           VH   +PF C FPGCGMRF YKHVR+ HE SG HVYT GDF   DE F S+PRGG KR  
Sbjct: 330 VHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDEDFTSRPRGGLKRKQ 389

BLAST of CmoCh18G008590 vs. ExPASy Swiss-Prot
Match: P34695 (Transcription factor IIIA OS=Lithobates pipiens OX=8404 GN=gtf3a PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-22
Identity = 69/241 (28.63%), Postives = 108/241 (44.81%), Query Frame = 0

Query: 4   QRPYICTVDGCDASYRRKDHLTRHLLQHQG-MIFKCPIENCSREFAYLSCLNRHLKVFHE 63
           +RP+ CTV+GC   +    HLTRH + H G    KC   +C   F  ++ L +H +  H 
Sbjct: 40  ERPFPCTVEGCGKGFVTLFHLTRHSMTHTGEKPCKCDAPDCDLSFTTMTNLRKHYQRAHL 99

Query: 64  GDTPEVEC------------------------QKRFVCPEDECGKEFRYASQLQKHEDSH 123
             +   EC                        Q+ F C  + C K F   S+L++HE  H
Sbjct: 100 SPSLIYECYFADCGQTFKKHNQLKLHQYIHTNQQPFKCNHEGCDKSFSSPSRLKRHEKVH 159

Query: 124 AKLD-SVEACCSELGCMKTFTNKQCLKAHMQSCH-QYIECEICGEK-KLRKNIKQHLRQK 183
           A      ++ CS +G  KT+T       H+ + H +   C++C  K K + ++K H ++ 
Sbjct: 160 AGYPCQKDSSCSFVG--KTWTE---YMKHLAASHSEPTICDVCNRKFKNKTHLKDH-KRT 219

Query: 184 HESDGPQTTIRCTHEGCSNVFSTSSNLRQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDN 217
           HE +  +   +C  +GC   ++    L+ H+   H   +PFAC  PGCG  F  K   D 
Sbjct: 220 HEVE--RVVYKCPRDGCDRTYTKKFGLQSHILSFHEDSRPFACGHPGCGKTFAMKQSLDR 272

BLAST of CmoCh18G008590 vs. ExPASy Swiss-Prot
Match: A6QQW0 (Zinc finger protein 143 OS=Bos taurus OX=9913 GN=ZNF143 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.5e-19
Identity = 63/222 (28.38%), Postives = 93/222 (41.89%), Query Frame = 0

Query: 4   QRPYICTVDGCDASYRRKDHLTRHLLQHQG-MIFKCPIENCSREFAYLSCLNRHLKVFHE 63
           ++ + C  DGC   Y    HL  H   H G   ++C    C + FA    L  H++  H 
Sbjct: 209 EKAFRCGYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRT-HT 268

Query: 64  GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 123
           G+ P       + C ED C K F+ +  LQKH                   ++T T ++ 
Sbjct: 269 GEKP-------YRCSEDNCTKSFKTSGDLQKH-------------------IRTHTGERP 328

Query: 124 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 183
            K H +          CG      NI++   + H  + P     CT  GC   F++++N 
Sbjct: 329 FKCHFEG---------CGRSFTTSNIRKVHIRTHTGERP---YYCTEPGCGRAFASATNY 388

Query: 184 RQHVKVVHLGQKPFACCFPGCGMRFG-----YK-HVRDNHEK 219
           + HV+ +H G+KP+ C  PGC  RF      YK HV   H K
Sbjct: 389 KNHVR-IHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSK 390

BLAST of CmoCh18G008590 vs. ExPASy Swiss-Prot
Match: P52747 (Zinc finger protein 143 OS=Homo sapiens OX=9606 GN=ZNF143 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 9.8e-19
Identity = 63/222 (28.38%), Postives = 92/222 (41.44%), Query Frame = 0

Query: 4   QRPYICTVDGCDASYRRKDHLTRHLLQHQG-MIFKCPIENCSREFAYLSCLNRHLKVFHE 63
           ++ + C  DGC   Y    HL  H   H G   ++C    C + FA    L  H++  H 
Sbjct: 234 EKAFRCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRT-HT 293

Query: 64  GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 123
           G+ P       + C ED C K F+ +  LQKH  +H      +  C   GC ++FT    
Sbjct: 294 GEKP-------YRCSEDNCTKSFKTSGDLQKHIRTHTGERPFK--CPFEGCGRSFTTSNI 353

Query: 124 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 183
            K H+++                          H  + P     CT  GC   F++++N 
Sbjct: 354 RKVHVRT--------------------------HTGERP---YYCTEPGCGRAFASATNY 413

Query: 184 RQHVKVVHLGQKPFACCFPGCGMRFG-----YK-HVRDNHEK 219
           + HV+ +H G+KP+ C  PGC  RF      YK HV   H K
Sbjct: 414 KNHVR-IHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSK 415

BLAST of CmoCh18G008590 vs. ExPASy Swiss-Prot
Match: P36508 (Zinc finger protein 76 OS=Homo sapiens OX=9606 GN=ZNF76 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-18
Identity = 60/213 (28.17%), Postives = 89/213 (41.78%), Query Frame = 0

Query: 5   RPYICTVDGCDASYRRKDHLTRHLLQHQG-MIFKCPIENCSREFAYLSCLNRHLKVFHEG 64
           R + C   GC   Y    HL  H   H G   ++C   +C + FA    L  H++  H G
Sbjct: 163 RAFRCGYKGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRT-HTG 222

Query: 65  DTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQCL 124
           + P       + CPE+ C K F+ +  LQKH  +H      +  C   GC ++FT     
Sbjct: 223 EKP-------YKCPEELCSKAFKTSGDLQKHVRTHTGERPFQ--CPFEGCGRSFTTSNIR 282

Query: 125 KAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNLR 184
           K H+++                          H  + P T   C    C   F++++N +
Sbjct: 283 KVHVRT--------------------------HTGERPYT---CPEPHCGRGFTSATNYK 335

Query: 185 QHVKVVHLGQKPFACCFPGCGMRFG-----YKH 212
            HV+ +H G+KP+ C  PGCG RF      YKH
Sbjct: 343 NHVR-IHTGEKPYVCTVPGCGKRFTEYSSLYKH 335

BLAST of CmoCh18G008590 vs. ExPASy TrEMBL
Match: A0A6J1G248 (transcription factor IIIA-like OS=Cucurbita moschata OX=3662 GN=LOC111449986 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 6.1e-165
Identity = 269/271 (99.26%), Postives = 271/271 (100.00%), Query Frame = 0

Query: 3   MQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE 62
           ++RPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE
Sbjct: 44  LERPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE 103

Query: 63  GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 122
           GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC
Sbjct: 104 GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 163

Query: 123 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 182
           LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL
Sbjct: 164 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 223

Query: 183 RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG 242
           RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG
Sbjct: 224 RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG 283

Query: 243 GRKRVCPTVEMLIRKRVTPPTELNFMMDEDC 274
           GRKRVCPTVEMLIRKRVTPPTELNFMMDEDC
Sbjct: 284 GRKRVCPTVEMLIRKRVTPPTELNFMMDEDC 314

BLAST of CmoCh18G008590 vs. ExPASy TrEMBL
Match: A0A6J1HQH9 (transcription factor IIIA-like OS=Cucurbita maxima OX=3661 GN=LOC111466445 PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 5.0e-159
Identity = 262/271 (96.68%), Postives = 266/271 (98.15%), Query Frame = 0

Query: 3   MQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE 62
           ++RPYICTVDGC+ASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE
Sbjct: 44  LERPYICTVDGCEASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE 103

Query: 63  GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 122
           G TPEVE QKRFVC ED CGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC
Sbjct: 104 GSTPEVEGQKRFVCSEDGCGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 163

Query: 123 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 182
           LKAH+QSCHQYIECEICGEKKLRKNIKQHLRQKHESDG QTTIRCTHEGCSNVFSTSSNL
Sbjct: 164 LKAHVQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGLQTTIRCTHEGCSNVFSTSSNL 223

Query: 183 RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG 242
           RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG
Sbjct: 224 RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG 283

Query: 243 GRKRVCPTVEMLIRKRVTPPTELNFMMDEDC 274
           GRKRVCPTVEMLIRKRVTPPTELNFMMDEDC
Sbjct: 284 GRKRVCPTVEMLIRKRVTPPTELNFMMDEDC 314

BLAST of CmoCh18G008590 vs. ExPASy TrEMBL
Match: A0A5A7SY16 (Transcription factor IIIA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007900 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 1.7e-135
Identity = 214/268 (79.85%), Postives = 245/268 (91.42%), Query Frame = 0

Query: 3   MQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE 62
           ++R Y+C++DGC+ASYRRKDHLTRHLL HQG +FKCPIE+C REFAYLSC+ RHLK  HE
Sbjct: 138 LERSYVCSIDGCNASYRRKDHLTRHLLHHQGTMFKCPIESCCREFAYLSCVTRHLKECHE 197

Query: 63  GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 122
           G+ P  ECQK+FVCPED CGK FRYAS+LQKHE SH KLDS+EACC+E GC+KTFTNKQC
Sbjct: 198 GEAPPEECQKQFVCPEDGCGKVFRYASRLQKHEGSHVKLDSIEACCTEPGCLKTFTNKQC 257

Query: 123 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 182
           L+AHMQ+CHQY++CEICGEKKLRKN+KQHLRQKHES+GP   I CT+EGCS VFST+SNL
Sbjct: 258 LRAHMQTCHQYVKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCTYEGCSKVFSTASNL 317

Query: 183 RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG 242
           +QH KVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSG HVYT+GDFE ADE+FRSKPRG
Sbjct: 318 QQHTKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGHHVYTNGDFEAADEQFRSKPRG 377

Query: 243 GRKRVCPTVEMLIRKRVTPPTELNFMMD 271
           GRKR+CPTVEMLIRKRVTPP++L+FMM+
Sbjct: 378 GRKRICPTVEMLIRKRVTPPSDLDFMME 405

BLAST of CmoCh18G008590 vs. ExPASy TrEMBL
Match: A0A1S3BH74 (transcription factor IIIA OS=Cucumis melo OX=3656 GN=LOC103489521 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 1.7e-135
Identity = 214/268 (79.85%), Postives = 245/268 (91.42%), Query Frame = 0

Query: 3   MQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE 62
           ++R Y+C++DGC+ASYRRKDHLTRHLL HQG +FKCPIE+C REFAYLSC+ RHLK  HE
Sbjct: 44  LERSYVCSIDGCNASYRRKDHLTRHLLHHQGTMFKCPIESCCREFAYLSCVTRHLKECHE 103

Query: 63  GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 122
           G+ P  ECQK+FVCPED CGK FRYAS+LQKHE SH KLDS+EACC+E GC+KTFTNKQC
Sbjct: 104 GEAPPEECQKQFVCPEDGCGKVFRYASRLQKHEGSHVKLDSIEACCTEPGCLKTFTNKQC 163

Query: 123 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 182
           L+AHMQ+CHQY++CEICGEKKLRKN+KQHLRQKHES+GP   I CT+EGCS VFST+SNL
Sbjct: 164 LRAHMQTCHQYVKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCTYEGCSKVFSTASNL 223

Query: 183 RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG 242
           +QH KVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSG HVYT+GDFE ADE+FRSKPRG
Sbjct: 224 QQHTKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGHHVYTNGDFEAADEQFRSKPRG 283

Query: 243 GRKRVCPTVEMLIRKRVTPPTELNFMMD 271
           GRKR+CPTVEMLIRKRVTPP++L+FMM+
Sbjct: 284 GRKRICPTVEMLIRKRVTPPSDLDFMME 311

BLAST of CmoCh18G008590 vs. ExPASy TrEMBL
Match: A0A6J1GYZ5 (transcription factor IIIA isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458776 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.3e-135
Identity = 222/272 (81.62%), Postives = 244/272 (89.71%), Query Frame = 0

Query: 3   MQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFHE 62
           MQRPYIC++DGC+ASYRRKDHLTRHLL HQG+I KCPIE CSREFAY+SC+NRHLK  HE
Sbjct: 1   MQRPYICSIDGCEASYRRKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHE 60

Query: 63  GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQC 122
           G  P  ECQK+FVCPED CGK FRYASQLQKHE SH KLDS+EACC+E GCMKTFTNK+C
Sbjct: 61  GGAPPEECQKQFVCPEDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKC 120

Query: 123 LKAHMQSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNL 182
           L+AHMQS HQYI CEICGEKKLRKN+KQHLRQKHES+GP   I CTHEGCS VFST SNL
Sbjct: 121 LQAHMQSFHQYINCEICGEKKLRKNMKQHLRQKHESEGPPEAIPCTHEGCSKVFSTISNL 180

Query: 183 RQHVKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRG 242
            QH+KVVHLGQKPFAC FPGCGMRFGYKHVRDNHEK GQHVYT+GDFE ADE+FRSKPRG
Sbjct: 181 HQHMKVVHLGQKPFACGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRG 240

Query: 243 GRKRVCPTVEMLIRKRVTPPTELNFM-MDEDC 274
           GRKR+ PTVEMLIRKR+TPP+EL+F+ MDE+C
Sbjct: 241 GRKRIRPTVEMLIRKRITPPSELDFITMDEEC 272

BLAST of CmoCh18G008590 vs. TAIR 10
Match: AT1G72050.1 (transcription factor IIIA )

HSP 1 Score: 320.9 bits (821), Expect = 1.0e-87
Identity = 160/315 (50.79%), Postives = 192/315 (60.95%), Query Frame = 0

Query: 2   LMQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFH 61
           + +R + C VD C ASYRRKDHL RHLL H+G +FKCP ENC  EF+    + RH+K +H
Sbjct: 1   MFERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYH 60

Query: 62  ---------------------------------------------------EGDTPEVEC 121
                                                               GD+   EC
Sbjct: 61  SNDNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKENEGNGGSGKDNNGNGDSQPAEC 120

Query: 122 ---QKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQCLKAHM 181
              QK+ VC E  CGK F+Y SQLQKH+DSH KLDSVEA CSE GCMK FTN++CLK+H+
Sbjct: 121 STGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHI 180

Query: 182 QSCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNLRQHVK 241
           +SCHQ+I CEICG K L+KNIK+HLR  H+ D     I+C  EGCS+ FS +SNL++H+K
Sbjct: 181 RSCHQHINCEICGSKHLKKNIKRHLR-THDEDSSPGEIKCEVEGCSSTFSKASNLQKHMK 240

Query: 242 VVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRGGRKRV 263
            VH   +PF C FPGCGMRF YKHVR+ HE SG HVYT GDF   DE F S+PRGG KR 
Sbjct: 241 AVHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDEDFTSRPRGGLKRK 300

BLAST of CmoCh18G008590 vs. TAIR 10
Match: AT1G72050.2 (transcription factor IIIA )

HSP 1 Score: 320.5 bits (820), Expect = 1.3e-87
Identity = 160/314 (50.96%), Postives = 192/314 (61.15%), Query Frame = 0

Query: 3   MQRPYICTVDGCDASYRRKDHLTRHLLQHQGMIFKCPIENCSREFAYLSCLNRHLKVFH- 62
           ++R + C VD C ASYRRKDHL RHLL H+G +FKCP ENC  EF+    + RH+K +H 
Sbjct: 90  LERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHS 149

Query: 63  --------------------------------------------------EGDTPEVEC- 122
                                                              GD+   EC 
Sbjct: 150 NDNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKENEGNGGSGKDNNGNGDSQPAECS 209

Query: 123 --QKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFTNKQCLKAHMQ 182
             QK+ VC E  CGK F+Y SQLQKH+DSH KLDSVEA CSE GCMK FTN++CLK+H++
Sbjct: 210 TGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIR 269

Query: 183 SCHQYIECEICGEKKLRKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNLRQHVKV 242
           SCHQ+I CEICG K L+KNIK+HLR  H+ D     I+C  EGCS+ FS +SNL++H+K 
Sbjct: 270 SCHQHINCEICGSKHLKKNIKRHLR-THDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKA 329

Query: 243 VHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTDGDFEVADERFRSKPRGGRKRVC 263
           VH   +PF C FPGCGMRF YKHVR+ HE SG HVYT GDF   DE F S+PRGG KR  
Sbjct: 330 VHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDEDFTSRPRGGLKRKQ 389

BLAST of CmoCh18G008590 vs. TAIR 10
Match: AT3G48430.1 (relative of early flowering 6 )

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 37/138 (26.81%), Postives = 64/138 (46.38%), Query Frame = 0

Query: 92   QKHEDSHAKLDSVEAC----CSELGCMKTFTNKQCLKAHMQSCHQYIECEI--CGEKKL- 151
            +K E+   + +  E C    C+  GC  +F++++ L  H ++      C I  CG+    
Sbjct: 1225 EKEEEEEEEENEEEECAAYQCNMEGCTMSFSSEKQLMLHKRNI-----CPIKGCGKNFFS 1284

Query: 152  RKNIKQHLRQKHESDGPQTTIRCTHEGCSNVFSTSSNLRQHVKVVHLGQKPFACCFPGCG 211
             K + QH R  H  D P   ++C  +GC   F  + +  +H++ VH G +P+ C  P CG
Sbjct: 1285 HKYLVQHQR-VHSDDRP---LKCPWKGCKMTFKWAWSRTEHIR-VHTGARPYVCAEPDCG 1344

Query: 212  MRFGYKHVRDNHEKSGQH 223
              F +      H++   H
Sbjct: 1345 QTFRFVSDFSRHKRKTGH 1352

BLAST of CmoCh18G008590 vs. TAIR 10
Match: AT5G04240.1 (Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.9e-07
Identity = 26/87 (29.89%), Postives = 40/87 (45.98%), Query Frame = 0

Query: 9    CTVDGCDASYRRKDHLTRHLLQHQG-MIFKCPIENCSREFAYLSCLNRHLKVFHEGDTPE 68
            CT +GC   +R   +L  H   H+    F+C  + CS  F +      HL++ H G+ P 
Sbjct: 1253 CTHEGCGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQWARTEHLRL-HTGERP- 1312

Query: 69   VECQKRFVCPEDECGKEFRYASQLQKH 95
                  ++C  D CG  FR+ S   +H
Sbjct: 1313 ------YICKVDGCGLSFRFVSDYSRH 1331

BLAST of CmoCh18G008590 vs. TAIR 10
Match: AT4G06634.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-06
Identity = 34/133 (25.56%), Postives = 59/133 (44.36%), Query Frame = 0

Query: 4   QRPYICTVDGCDASYRRKDHLTRHLLQH-QGMIFKCPIENCSREFAYLSCLNRHLKVFHE 63
           +R YICT +GC  ++    +L  H+  H Q     CP   C + +A+   L  H+  +HE
Sbjct: 135 ERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHE 194

Query: 64  ----GDTPEVECQKRFVCPEDECGKEFRYASQLQKHEDSHAKLDSVEACCSELGCMKTFT 123
               G+TP      ++  P ++  +  +  + +          D   AC  E GC K + 
Sbjct: 195 KNGGGETP------KYTPPAEKVLRTVKTPATV-----CGPSSDRPYACPYE-GCEKAYI 254

Query: 124 NKQCLKAHMQSCH 132
           ++  LK H++  H
Sbjct: 255 HEYKLKLHLKREH 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q84MZ41.9e-8650.96Transcription factor IIIA OS=Arabidopsis thaliana OX=3702 GN=TFIIIA PE=1 SV=1[more]
P346951.5e-2228.63Transcription factor IIIA OS=Lithobates pipiens OX=8404 GN=gtf3a PE=2 SV=1[more]
A6QQW07.5e-1928.38Zinc finger protein 143 OS=Bos taurus OX=9913 GN=ZNF143 PE=2 SV=1[more]
P527479.8e-1928.38Zinc finger protein 143 OS=Homo sapiens OX=9606 GN=ZNF143 PE=1 SV=2[more]
P365082.2e-1828.17Zinc finger protein 76 OS=Homo sapiens OX=9606 GN=ZNF76 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1G2486.1e-16599.26transcription factor IIIA-like OS=Cucurbita moschata OX=3662 GN=LOC111449986 PE=... [more]
A0A6J1HQH95.0e-15996.68transcription factor IIIA-like OS=Cucurbita maxima OX=3661 GN=LOC111466445 PE=4 ... [more]
A0A5A7SY161.7e-13579.85Transcription factor IIIA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A1S3BH741.7e-13579.85transcription factor IIIA OS=Cucumis melo OX=3656 GN=LOC103489521 PE=4 SV=1[more]
A0A6J1GYZ52.3e-13581.62transcription factor IIIA isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114587... [more]
Match NameE-valueIdentityDescription
AT1G72050.11.0e-8750.79transcription factor IIIA [more]
AT1G72050.21.3e-8750.96transcription factor IIIA [more]
AT3G48430.11.4e-0726.81relative of early flowering 6 [more]
AT5G04240.18.9e-0729.89Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) fami... [more]
AT4G06634.15.7e-0625.56zinc finger (C2H2 type) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 74..98
e-value: 0.0071
score: 25.6
coord: 7..31
e-value: 8.4E-4
score: 28.6
coord: 196..222
e-value: 12.0
score: 12.6
coord: 106..131
e-value: 1.4
score: 17.9
coord: 165..190
e-value: 0.0029
score: 26.9
coord: 36..61
e-value: 0.024
score: 23.8
coord: 134..156
e-value: 12.0
score: 12.7
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 7..31
e-value: 0.0011
score: 19.3
coord: 166..190
e-value: 0.0044
score: 17.4
coord: 36..61
e-value: 0.0067
score: 16.8
coord: 74..98
e-value: 2.9E-4
score: 21.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 108..131
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 9..31
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 76..98
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 198..222
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 38..61
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 167..190
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 7..33
score: 9.286205
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 165..195
score: 13.214211
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 36..66
score: 12.819332
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 74..103
score: 11.842525
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 71..134
e-value: 9.0E-8
score: 34.0
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 34..70
e-value: 3.9E-6
score: 28.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 161..239
e-value: 4.2E-10
score: 41.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 3..33
e-value: 2.9E-9
score: 38.6
NoneNo IPR availablePANTHERPTHR46179:SF15SUBFAMILY NOT NAMEDcoord: 4..267
NoneNo IPR availablePANTHERPTHR46179ZINC FINGER PROTEINcoord: 4..267
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 4..33
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 152..202
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 71..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G008590.1CmoCh18G008590.1mRNA