CmoCh18G008580 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G008580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor IIIA-like
LocationCmo_Chr18: 9915171 .. 9916831 (+)
RNA-Seq ExpressionCmoCh18G008580
SyntenyCmoCh18G008580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGCCCACTATCCAGTATGAGGTGCTCTAGGGTTTTTACCGCTCTTCTCTCTCTATATATATTCAGCTTCCGGATATTTCGGAGGAAAAGGAAAGCGGCCGAGCAACACAGCTGGGAGCTGAATCACACCCTTCTTGCAGCACAGCCCCTTCCTTTTTTTCTCTTGTTGCCGCCGTCGCTCGCCGGAAAGTCACCATCACCTTCTGCTGTGGCCCTTTATCCATCTCTTGCTCATTCTTAAGGTCTGTCCGGATCTATGGTTTTTCTTTTGTTTTTCGTTTTGGTTTCTTTAGTTGAATCAACTTCAAAATTGGGGAAATTTGGAATTAGGTGAGATTTAATTTGAAATCCTTCCGAATTCGAGGAAAAGAAATAGAAGGTTTGTGTTATGTGCTGTTTAGATTTGGTTGAATCTTCTCGGATAGGAATTTTGTTCGTTTACATCGCTATTGACTGATTGTACTGATTAGAATAGATCGTGATCTGAGTGTCAATTCACAGTTAGCAACGAGTAAAATCATGGTAGGAGTTGTTGTTCATGTTGTGTTTCGGACTAGGGGAGTTATTAGACAGATGAGGGTTTTATCCTGAAGCACTAGGATCGTTTGGAACGAAGATTTTATAACAGCTCAAGCCGACCACTACCAAATACTGTTCTATTTGAGCTTTCCCTTATAGGTTTACACGCCCTTATAAAGATGGTTCGTTCTTCTCTCCAACCGATATAGGATCTCATAATCTACCCCTTCGGGCCCAGAATTCTTGCAGATACTCATTCTCCTCTCCAATCGACGTGGGACCCCCCAATTCACCCCCTTTGAGGCCCAACGTCCTTGCTGTAACACTGCCTGGTGTCCATCCCTTTTGGGGCTCAACCTCCTTGCTGGCATGTTGCCTGGTGTTTGGCTTTGATACCATTTGTAACAACCCAAGCCTACCACTAGTAGATATTGTCCTATTTGGACTTTCCTCATGGGCTTCCCCTCAAGGTTTTAAAACCCGTCTGCTAGGGAGAGGTTTTCACACCCTTAAGAATGCTTTGTTCTTCTCTCCTGCTGATGTGGGATCTCACAGATCTTCTTTGTTTTATTGAAAGGAATCTTTTAGTATTCGTTTGAATGTTAGGAGAGGCTAACCGTTAATTTGAATGCATTATTTATCAATCTTGTTTCTTTTCCAGATGGAGAGCGGGAAATATAAGGATGATGGAGATGATAAGGCGAAAGACAGAAAATCCAATATTTGCCTCGAATGTGGCGCTGCTTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTCGAGGTATCTTGAGATGTTCAATATCAATTTCGTTTGCTTAAATCAAGTGCCCATGTTTGGTTTTTTATTTTAGCCATCCTAATTACATGTTCTTCGCCCGGTTTTCATTTATTATGAATTATTCACAGGTTCTTACTGAATTCCTTCCTGTCAATTCATTATCTTTTCTCTTGAATTGAAGAACATTGGTTTTGCAGGAAAATCCTTAAATATATTAACATAATATGAAAGATTCTGGATACCTCAGCGTGAAGCATTGGATCCCACATTAAGAACTCCAAAATGTATGAGGCTGCATTTTCCTAGCTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGA

mRNA sequence

ATGAAGAAGCCCACTATCCAGTATGAGCTTCCGGATATTTCGGAGGAAAAGGAAAGCGGCCGAGCAACACAGCTGGGAGCTGAATCACACCCTTCTTGCAGCACAGCCCCTTCCTTTTTTTCTCTTGTTGCCGCCGTCGCTCGCCGGAAAGTCACCATCACCTTCTGCTGTGGCCCTTTATCCATCTCTTGCTCATTCTTAAGGTCTGTCCGGATCTATGTTGAATCAACTTCAAAATTGGGGAAATTTGGAATTAGAATAGATCGTGATCTGAGTGTCAATTCACAGTTAGCAACGAGTAAAATCATGATGGAGAGCGGGAAATATAAGGATGATGGAGATGATAAGGCGAAAGACAGAAAATCCAATATTTGCCTCGAATGTGGCGCTGCTTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTCGAGTGCCCATGTTTGGTTTTTTATTTTAGCCATCCTAATTACATGTTCTTCGCCCGATTCTGGATACCTCAGCGTGAAGCATTGGATCCCACATTAAGAACTCCAAAATGTATGAGGCTGCATTTTCCTAGCTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGA

Coding sequence (CDS)

ATGAAGAAGCCCACTATCCAGTATGAGCTTCCGGATATTTCGGAGGAAAAGGAAAGCGGCCGAGCAACACAGCTGGGAGCTGAATCACACCCTTCTTGCAGCACAGCCCCTTCCTTTTTTTCTCTTGTTGCCGCCGTCGCTCGCCGGAAAGTCACCATCACCTTCTGCTGTGGCCCTTTATCCATCTCTTGCTCATTCTTAAGGTCTGTCCGGATCTATGTTGAATCAACTTCAAAATTGGGGAAATTTGGAATTAGAATAGATCGTGATCTGAGTGTCAATTCACAGTTAGCAACGAGTAAAATCATGATGGAGAGCGGGAAATATAAGGATGATGGAGATGATAAGGCGAAAGACAGAAAATCCAATATTTGCCTCGAATGTGGCGCTGCTTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTCGAGTGCCCATGTTTGGTTTTTTATTTTAGCCATCCTAATTACATGTTCTTCGCCCGATTCTGGATACCTCAGCGTGAAGCATTGGATCCCACATTAAGAACTCCAAAATGTATGAGGCTGCATTTTCCTAGCTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGA

Protein sequence

MKKPTIQYELPDISEEKESGRATQLGAESHPSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRSVRIYVESTSKLGKFGIRIDRDLSVNSQLATSKIMMESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECPCLVFYFSHPNYMFFARFWIPQREALDPTLRTPKCMRLHFPSLIGSVSGWETS
Homology
[Close]
BLAST of CmoCh18G008580 vs. ExPASy Swiss-Prot
Match: Q84MZ4 (Transcription factor IIIA OS=Arabidopsis thaliana OX=3702 GN=TFIIIA PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 110 KDDGDDKA-----KDRKSNICLECGAAFKKPAYLKQHMQSHSLE 149
           +++ DD+A     +   ++ C ECGA FKKPA+LKQHMQSHSLE
Sbjct: 48  EEERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLE 91

[Close]
BLAST of CmoCh18G008580 vs. ExPASy TrEMBL
Match: A0A6J1G248 (transcription factor IIIA-like OS=Cucurbita moschata OX=3662 GN=LOC111449986 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 104 MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP 151
           MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE P
Sbjct: 1   MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLERP 47

[Close]
BLAST of CmoCh18G008580 vs. ExPASy TrEMBL
Match: A0A6J1HQH9 (transcription factor IIIA-like OS=Cucurbita maxima OX=3661 GN=LOC111466445 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 104 MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP 151
           MESGKYKDDGDDKAKDRKSNIC ECGAAFKKPAYLKQHMQSHSLE P
Sbjct: 1   MESGKYKDDGDDKAKDRKSNICHECGAAFKKPAYLKQHMQSHSLERP 47

[Close]
BLAST of CmoCh18G008580 vs. ExPASy TrEMBL
Match: A0A6J1JLR2 (transcription factor IIIA isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485568 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 104 MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP 151
           MESGK+ D+G D+ K+ KSNIC ECGA FKKPAYLKQHMQSHSLE P
Sbjct: 1   MESGKHNDEGGDRTKNGKSNICQECGAEFKKPAYLKQHMQSHSLERP 47

[Close]
BLAST of CmoCh18G008580 vs. ExPASy TrEMBL
Match: A0A0A0KV54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623900 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 104 MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP 151
           ME GK+ DDGDDK K  K NIC +CGAAF+KPAYLKQHMQSHSLE P
Sbjct: 78  MEIGKHNDDGDDKTKSGKFNICQQCGAAFRKPAYLKQHMQSHSLERP 124

[Close]
BLAST of CmoCh18G008580 vs. ExPASy TrEMBL
Match: A0A6J1H0A5 (transcription factor IIIA isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458776 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 104 MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP 151
           MESGK+ +DG DK  + KSNIC ECGA FKKPAYLKQHMQSHSLE P
Sbjct: 1   MESGKH-NDGGDKTINGKSNICQECGAEFKKPAYLKQHMQSHSLERP 46

[Close]
BLAST of CmoCh18G008580 vs. TAIR 10
Match: AT1G72050.2 (transcription factor IIIA )

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 110 KDDGDDKA-----KDRKSNICLECGAAFKKPAYLKQHMQSHSLE 149
           +++ DD+A     +   ++ C ECGA FKKPA+LKQHMQSHSLE
Sbjct: 48  EEERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLE 91

The following BLAST results are available for this feature:
BLAST of CmoCh18G008580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84MZ42.1e-0554.55Transcription factor IIIA OS=Arabidopsis thaliana OX=3702 GN=TFIIIA PE=1 SV=1[more]
BLAST of CmoCh18G008580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G2481.9e-1797.87transcription factor IIIA-like OS=Cucurbita moschata OX=3662 GN=LOC111449986 PE=... [more]
A0A6J1HQH91.2e-1695.74transcription factor IIIA-like OS=Cucurbita maxima OX=3661 GN=LOC111466445 PE=4 ... [more]
A0A6J1JLR21.5e-1176.60transcription factor IIIA isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485568... [more]
A0A0A0KV541.5e-1176.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623900 PE=4 SV=1[more]
A0A6J1H0A51.4e-0976.60transcription factor IIIA isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114587... [more]
BLAST of CmoCh18G008580 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G72050.21.5e-0654.55transcription factor IIIA [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 124..146
e-value: 4.3E-6
score: 28.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 125..145
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 123..150
score: 11.572346

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G008580.1CmoCh18G008580.1mRNA