CmoCh18G007590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G007590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S21 family protein
Location	Cmo_Chr18: 9214353 .. 9216274 (-)
RNA-Seq Expression	CmoCh18G007590
Synteny	CmoCh18G007590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGAAAGTGGGGTTTGTAAGAACGACGAACTGAGTGGCTAAACCTAGAAATGAACTCGTTGGCGCGGAACATATCGTGCTCCATCAGGTCTTCGATTCACGCCACTGCCTCGCTACATTGCTACCAGCAGCAATGGAGGGGGATCCGAGTGAAGGTACTGAACGGGAATCTTGAACGGGCAATAACATTCTTGCAAAGGAAGATGCGATCGAGCGGAATCGAGCGCCTGATTAAGCGCGAGCAGACTCACCACATCAAGAACTCCGAGAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCACAGGACCTTGCTCGCAAGCTTAAAGCCATTCTTATCAAGAAAGTCAGGTATTTGTAGATCCTTCGGAAATCATTTCTACCGTAAATATCTTCGTTCAACAATAAGCTATTGAGTAATCTAAGCATGTATGTGTTTGAATGAATTGTGCATGGATCTTTTGGCTTTGTCTATTTGTTGCTTGCTTATTGTTAGCAAAAAGAATACCGATCTTTTTTACATTTCTTAGTACAATCAAATGCAACAAGTTTCTGCCCGTAGAACTGTAAGAAAATTAGAATTCCTGCCCAAATCATCAGCAATGAACAACTGTATTGCCAGCACAAGATATGTGTTCTAGAGTAGAGTCAAAATGCTGAAGGAAAGATTTGCTGAACATGTATCCCTAATAAAATTCTTTATGCAAATTGTTGGGTCGGTAAAATTGGTGATATTAGTGATAATCGTCCATCCAGGAAATCCTTTGATGGTCACATATCATAATACATAGCAAATGCATTGCATTTACGCCAAGCTTCAATGGTTATATGTTAGGATATTTAGATCCTTAGGTTAAAGAGAATTGAGCCAGAGATTTCTAGCATCTTTTAGATCTGCAACAGCTTCTTATTTCCTCAAGTCAAGAGGAGATAACGATCTGGACAAAACTTGAACAGAAAAATATGCATTATTTCCATGAAAGTAGGAAAAATGAGTTTGATTATGACGGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTCTGGATTTTTCCTTTCGAGTTTCCCCTCACAATCTACCTGTCCCTTAGAGGCCCAACGTCCTCGCTGGCACTCGTTTCCTTCTCCAATTGATGTGGAATCTCACAATCCACCTCCTTTGGGGTCTAGCATCCTTGCTGGCACACCGCCCGGAGTCCACTCCCCTTCGAGGCTCAGCGTTCTCGCTAGCACACCGTCCGGTGTCTGGCTTTGATACCATTTGTAACAGCCCAAGCCTATCGCTAGCAAATATTGTCCTCTTTGGGCTTTCATTTTCAGACTTTCCCTCAAGGTTTTTAAAACGCATCTCCTAGGAAGAGGCTTTCACATCCTTATAAAGAATGCTTCGTTTCCCTCTCCAACCGATGTGGGATCTTACATTGATTGAATTAAACGAGGAAATGATTGTAACGACGTGATCTTTTCTTTTCTTTCCGTATGATTTCTTTGTATCTTTCTTCTAACTCCAAATTTATCATACGATATGTTGCAGGGGTCTGTGAGCTCGTGACAATAGGTAGGTGGAAAAGAGGGCTCTGCAGTATAGAATTCACATGCATCTTGCTCTTTGGACACGAGCTCAATAGTTACTAATCTCTTTCTTTGAATCTCTTCTTAAACTCCCACTGCCTTTCAACAAGTAGAATTCAAGTTCCTTCACTCATCTGGAAGGCTCCAATAAGCTGTTTATCATTGTGTTATTTCTTATTTGATCAATTTAGCTGCCTGCTATGTAATGGATCCTTAAATTTCTCTGTCTTCCTCCTTGTTCATCTTCCATTCCATGCAATTTACTTGGATTCTGTAGAACCCTTCAGTTTGAAGTAAATTATAGAAATGGCAACCCTGCAGGCACTCAACTTGTTCCTATC

mRNA sequence

CTGGAAAGTGGGGTTTGTAAGAACGACGAACTGAGTGGCTAAACCTAGAAATGAACTCGTTGGCGCGGAACATATCGTGCTCCATCAGGTCTTCGATTCACGCCACTGCCTCGCTACATTGCTACCAGCAGCAATGGAGGGGGATCCGAGTGAAGGTACTGAACGGGAATCTTGAACGGGCAATAACATTCTTGCAAAGGAAGATGCGATCGAGCGGAATCGAGCGCCTGATTAAGCGCGAGCAGACTCACCACATCAAGAACTCCGAGAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCACAGGACCTTGCTCGCAAGCTTAAAGCCATTCTTATCAAGAAAGTCAGGGGTCTGTGAGCTCGTGACAATAGGTAGGTGGAAAAGAGGGCTCTGCAGTATAGAATTCACATGCATCTTGCTCTTTGGACACGAGCTCAATAGTTACTAATCTCTTTCTTTGAATCTCTTCTTAAACTCCCACTGCCTTTCAACAAGTAGAATTCAAGTTCCTTCACTCATCTGGAAGGCTCCAATAAGCTGTTTATCATTGTGTTATTTCTTATTTGATCAATTTAGCTGCCTGCTATGTAATGGATCCTTAAATTTCTCTGTCTTCCTCCTTGTTCATCTTCCATTCCATGCAATTTACTTGGATTCTGTAGAACCCTTCAGTTTGAAGTAAATTATAGAAATGGCAACCCTGCAGGCACTCAACTTGTTCCTATC

Coding sequence (CDS)

ATGAACTCGTTGGCGCGGAACATATCGTGCTCCATCAGGTCTTCGATTCACGCCACTGCCTCGCTACATTGCTACCAGCAGCAATGGAGGGGGATCCGAGTGAAGGTACTGAACGGGAATCTTGAACGGGCAATAACATTCTTGCAAAGGAAGATGCGATCGAGCGGAATCGAGCGCCTGATTAAGCGCGAGCAGACTCACCACATCAAGAACTCCGAGAAGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCACAGGACCTTGCTCGCAAGCTTAAAGCCATTCTTATCAAGAAAGTCAGGGGTCTGTGA

Protein sequence

MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL

Homology

[Close]

BLAST of CmoCh18G007590 vs. ExPASy TrEMBL
Match: A0A6J1G018 (uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC111449463 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]

BLAST of CmoCh18G007590 vs. ExPASy TrEMBL
Match: A0A6J1HQF3 (uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.4e-47
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKM+SSGIERL
Sbjct: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMQSSGIERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 107
           IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

[Close]

BLAST of CmoCh18G007590 vs. ExPASy TrEMBL
Match: A0A6J1DEG8 (uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019699 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.2e-41
Identity = 97/112 (86.61%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATAS------LHCYQQQWRGIRVKVLNGNLERAITFLQRKMRS 60
           MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKM+S
Sbjct: 1   MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQS 60

Query: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 107
           SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 112

[Close]

BLAST of CmoCh18G007590 vs. ExPASy TrEMBL
Match: A0A6J1F3V2 (uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC111441929 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.2e-41
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 107
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of CmoCh18G007590 vs. ExPASy TrEMBL
Match: A0A6J1J5L6 (uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-40
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 107
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

[Close]

BLAST of CmoCh18G007590 vs. TAIR 10
Match: AT3G26360.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-25
Identity = 64/106 (60.38%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MNSLARNISCSIRSSIHATASLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIERL 60
           MN++A+ +     + +    SL+   QQ RGIRVKV + +L++A+T LQ+KM+SSG+ERL
Sbjct: 1   MNTIAKRV-----TGLVTRPSLNQQLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERL 60

Query: 61  IKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 107
           IK  QTHHIKNSEK+VLARKNLER+I+S D ARKL++ILIKKVRGL
Sbjct: 61  IKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101

The following BLAST results are available for this feature:

BLAST of CmoCh18G007590 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G007590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G018	1.2e-47	100.00	uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC1114494...	[more]
A0A6J1HQF3	3.4e-47	99.06	uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431...	[more]
A0A6J1DEG8	8.2e-41	86.61	uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1F3V2	8.2e-41	88.89	uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1J5L6	3.1e-40	87.96	uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507...	[more]

BLAST of CmoCh18G007590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26360.1	2.1e-25	60.38	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 34..87 e-value: 2.4E-12 score: 46.4
None	No IPR available	PANTHER	PTHR37228:SF1	RIBOSOMAL PROTEIN S21 FAMILY PROTEIN	coord: 1..105
None	No IPR available	PANTHER	PTHR37228	RIBOSOMAL PROTEIN S21 FAMILY PROTEIN	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G007590.1	CmoCh18G007590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome