CmoCh18G006930 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G006930
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L17
LocationCmo_Chr18: 8813380 .. 8816267 (+)
RNA-Seq ExpressionCmoCh18G006930
SyntenyCmoCh18G006930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCTAGTACTCTTGCTTGCAGGAGGGACTCAATCTGGTTCAGAGAGGTGAAGATTTAGCATCCGCCGCCATGGTACATTTCCTCTTGCAGCGTTCCGATCTCCTTTTTCACTTCTTATTATCTGTACAATGCTTGAAATTCCACGAGCTTAGCAAGTTTCTGAATTCAGATTTATGTTAATGTTCCCTTTTACAGGTTAAGTACTCAAGGGAGCCGGATAACATCACCAAGTGTAAGTTTGTTCTTCTTAATTTGTATTTTTTTTTTTTTTTTAGTTTCATATTGATTTTCGTTATGCAGTTGTTGTGATTTGCACTATTTCTGAAGTTCTGTTAGAAACTTAGAAGTTCAGAATCTAATGCTTTTTGTTTTTAATTTATATTCAGCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGGTAACTTAGCTGCTTTAACTGCTTTCTCATTTCATTGTTCTTTTTCGTTGAATAAAAACCCGCCAATTCTGTGCAAGTATGTAGATTTTTAATACATGTATTCATTTATAGTTGTTAATGTTTTGGATTAAGAGTAATGTCATCTACATATTTGATACCGTGAATGTGATTATTTTATGACTGTCTGATGTTAACCTGATGAAAAAAGCAGGGTTCTGTTGCCTATTTTGTGAATAGTGCTCTTGTAAACTTCAGGAAAATCGAATTGGATCATTATTGGGTGAACCTCTGTATAAATAATTGCTAAAGGTTCAGTAAATAATGCTACATAATCTTTGCTGCTTGCTGTCATGGTTGATAGTTTTTGGATTGTGCGTACAAGAGTTATAATTTTGCACTATCTGACTTTATGTTGTGCATTTGATAATTATCTGGGGCTGATTGTAAGTTTGTAACCAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTGAATGAATCATTATTGGGTGAACCTCTGTTTTTCTAATTTCTGAAAGTTCAGTAAATGATGCTACATAAGCTCTATAGCATTTACTGTCTCGTAAGTTTGCATCGATGATGGTCTTTGGAACCTAAAATTTTATTGCTGATAGGCCTTTTTTTGTTTGACTCAAAGAACACAGGTTAAATGTTAGTAAATTGTTTTTGAGGACCATTTATTCAATTAATTTTATACTATTCATACTAAATATTATGTAGAAATTGGAAAATTTTTACTACATTTATGTAGGATTTTCTGAAATTGGACTTGTTCTGTAACCTGATGAAAAAAGCAGGGCTTTGTTGCCTCTGTGAACTGGGCTCTCGTAAACTTCAGGGAAACTAAGTGCATGGTTATTGGGTGAACCTCTGTAGTAATTATCACTGAAGGTTCAGTAAATTGTGCTACATTTTTACCATATCATAGTGTTCAAAAAGGTTGTATACATAAAATTTCAGCAAATAAGTTGATATACATTAAACAAGTGATCCTAGATAGACATTTTTATGTGGGGCATCACCATTTTGCAAAGAATTATCTTGATAAAATGTACCTGTTCAAAAAGCAGGGCTCTGTTGCCTTTTATGAATGGTGGCTCTCGTCAAATTCAGGGAAACTGAATGCATTGTTATTGGATGAACCTCTGTAAAGCTAGTTGCTGAAGGTTCAGTAAATGATGCTACACAAATAATATAGCTTATCGACATAGAACATGGATCTAATTGTAACAATTAACATTCTCATAGTAGAATTTCATACTGTTTTATTGTAATAAGGTGTGGCTGTTCTCATTCTTGTCATTGTGAATTGGTTGAATTTTTTACAGCTTGTATAAACTTCTTGAATGCATCTTTTGTTACCTTGTTTTTAACTTATTGCATCCACCATCATTTTTTTTTTTTTGTCTGTAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGCGGAGGAGTTGGACGAACTGCTCAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCGGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTACGTATAACCTTCTCTCCTAGTTACTTATGCCATCCCTGTTTTTGATAACGATTCTGACCCGACTATGGTATCTTCCTCATTCAGGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGCCGTACCTACCGTGCTCACGGAAGAATTAACCGTATGTTTTTTCCTTAAGATCTCAAAAAGAACAACACTAAATTGTTTCTGGGTTTGATCATTGCATAAACTATCTGGAACGTTTGGTGTCTATTTTTTCTTGTGCAGCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGGTAAAATTTGTATTAGATTTGTATATATTATGGTGTGTGTTTAGGGGGAGGGGTTGTTCATAAATGCTTGGTTTTGTGGTGGCAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCAAATATTATTGCCGCATTTTGTACTTGTTTTTTTGTTTCAAAGCAGAGTTTGGTTGCTTAAGTCTAGTCAAATATTAGAACGAGTTGTTTGGTATCCAATGCCTCTTAACTTTGTAGTTTATGGGATCCTCGATCATGTTCATTTTGGATTTTTATTCCCTTTTAAGCCAAGAGTTCTACAAATCTTTACTTCCTTTTCAACCTCCCTCTTTGTTTAGTTCATTGTTTGAAATCCCAT

mRNA sequence

CTTCCTAGTACTCTTGCTTGCAGGAGGGACTCAATCTGGTTCAGAGAGGTGAAGATTTAGCATCCGCCGCCATGGTTAAGTACTCAAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGCGGAGGAGTTGGACGAACTGCTCAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCGGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGCCGTACCTACCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCAAATATTATTGCCGCATTTTGTACTTGTTTTTTTGTTTCAAAGCAGAGTTTGGTTGCTTAAGTCTAGTCAAATATTAGAACGAGTTGTTTGGTATCCAATGCCTCTTAACTTTGTAGTTTATGGGATCCTCGATCATGTTCATTTTGGATTTTTATTCCCTTTTAAGCCAAGAGTTCTACAAATCTTTACTTCCTTTTCAACCTCCCTCTTTGTTTAGTTCATTGTTTGAAATCCCAT

Coding sequence (CDS)

ATGGTTAAGTACTCAAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGCGGAGGAGTTGGACGAACTGCTCAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCGGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGCCGTACCTACCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGA

Protein sequence

MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSGASS
Homology
[Close]
BLAST of CmoCh18G006930 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-85
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNITKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]
BLAST of CmoCh18G006930 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 314.3 bits (804), Expect = 9.0e-85
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of CmoCh18G006930 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79
Identity = 148/170 (87.06%), Postives = 157/170 (92.35%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP N TKS KA G DLRVHFKNTRETA ALRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD+L VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]
BLAST of CmoCh18G006930 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-76
Identity = 142/167 (85.03%), Postives = 151/167 (90.42%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS +P N TKS KA G DLRVHFKNTRETA ALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]
BLAST of CmoCh18G006930 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-76
Identity = 141/171 (82.46%), Postives = 153/171 (89.47%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P N TKS KA G DLRVHFKNTRETA ALR++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKS 172
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

[Close]
BLAST of CmoCh18G006930 vs. ExPASy TrEMBL
Match: A0A6J1HQT9 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of CmoCh18G006930 vs. ExPASy TrEMBL
Match: A0A6J1G2C7 (60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of CmoCh18G006930 vs. ExPASy TrEMBL
Match: A0A5A7STA3 (60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002190 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of CmoCh18G006930 vs. ExPASy TrEMBL
Match: A0A0A0KPZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of CmoCh18G006930 vs. ExPASy TrEMBL
Match: A0A1S3BDN4 (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of CmoCh18G006930 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 317.0 bits (811), Expect = 9.9e-87
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNITKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]
BLAST of CmoCh18G006930 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 314.3 bits (804), Expect = 6.4e-86
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of CmoCh18G006930 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 211.5 bits (537), Expect = 5.9e-55
Identity = 118/176 (67.05%), Postives = 124/176 (70.45%), Query Frame = 0 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
                                      ELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:
BLAST of CmoCh18G006930 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93VI31.4e-8590.2360S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1[more]
P514139.0e-8589.2060S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2[more]
O485571.1e-7987.0660S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1[more]
P352661.2e-7685.0360S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1[more]
P352672.6e-7682.4660S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1[more]
BLAST of CmoCh18G006930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQT94.1e-96100.0060S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=... [more]
A0A6J1G2C74.1e-96100.0060S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 S... [more]
A0A5A7STA31.3e-9498.9160S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A0A0KPZ41.3e-9498.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1[more]
A0A1S3BDN41.3e-9498.9160S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1[more]
BLAST of CmoCh18G006930 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27400.19.9e-8790.23Ribosomal protein L22p/L17e family protein [more]
AT1G67430.16.4e-8689.20Ribosomal protein L22p/L17e family protein [more]
AT1G67430.25.9e-5567.05Ribosomal protein L22p/L17e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036394Ribosomal protein L22/L17 superfamilyGENE3D3.90.470.10Ribosomal protein L22/L17coord: 1..182
e-value: 1.2E-76
score: 258.5
IPR036394Ribosomal protein L22/L17 superfamilySUPERFAMILY54843Ribosomal protein L22coord: 1..154
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 17..152
e-value: 2.3E-39
score: 133.8
IPR001063Ribosomal protein L22/L17CDDcd00336Ribosomal_L22coord: 15..151
e-value: 3.75243E-36
score: 119.903
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealTIGRFAMTIGR01038TIGR01038coord: 4..154
e-value: 4.9E-60
score: 199.8
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealPANTHERPTHR1159360S RIBOSOMAL PROTEIN L17coord: 1..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..183
NoneNo IPR availablePANTHERPTHR11593:SF3560S RIBOSOMAL PROTEIN L17-2-LIKEcoord: 1..183
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 127..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G006930.1CmoCh18G006930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome