CmoCh18G006860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G006860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionELMO domain-containing protein
LocationCmo_Chr18: 8758062 .. 8763796 (-)
RNA-Seq ExpressionCmoCh18G006860
SyntenyCmoCh18G006860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCTCATTTGATTTGCAGACGGTGGGATGATGAGCGCGAGAGATGAGGAATCAGAGAACTACGGAGATTATTCGGCGCTGCGCACACATTTCCTTCGCCGTCTCTGGTAATGCTTCTCTCAACGCTTCTTCTCTATTTGCCTGTTCTTAGACGCATTTGAATTAGCCTTCTTTAGGAATTACTGTAAGTTTCAGTCAGATGCAAGCCATAAGAATTCATCTGATATGGTGATTTAGCCTGTATAAGACTTGCGGTTAGTATCATTTTTCTCAGCCTCCGCAGGAGTGAATTAGAAAAGGAAAAACGTGGTAGAATAGGGAAAGATCTGGTCGGATACTATTTTTCTATGTTGTTCAGTGATATAATGGCTGATTTAGTGGCAATAGTTTCAAGTTTAAGCTTAAATTTGAACCTGATCATGTGATGTGTGGAACGCCAACTTGGATTGGCAAGGGAATCACTTGCATTGCATTTGCTTCAAGCTGAACGGAAATTATGACCGATTTCGTTCTACCTGACTCCTGCACAGATTAATCACGTCCTTTACGAACAAGACGCTTCCTCCATATGGATAATTTTCAAATTTTCAAATAGTTTTGGTAATGATTCTTGTCATCTATGTATGTACTGTCTTTTTAACTTGATGAAAATCATTGTATGGCTGATTGCCTCAGAATAACATTTGCATTTATGATCTCAGGAAGATAGGTTAAGAACATTAAAGCACCGATCAAGAACAGACCGACAAGTTTACATATATTTTCAAATTTCATGCCTTAGTTTAGTGCTCAGACGATTCTCAAAGCACAGAAACTTTAGTTCATATGTGGAGTAACTTCTAAACCATTAATAACGTTTGCTTCTAATGTCACTGTACAACAATCTTTATGTTATTAGTTGTATGTGCACACCTTGCTTTTTAGGATGCTTATTATGAAATTTTCACCAAGGACAGGATGCTCTAAGAGCTCTGTGGTATGCAGCTTATCCTGATCAAGAGCGTCAGGCGTGGTATCAGATCAATGGAAAGAAATTGGATGGCAGTGAAGAAATCCATCGACTGATTTTAGGTTGTTAATTTGCTACATGAGTTGAGGGCTCCTTTCATTGCTCTGAAAAGCTTTTACCTAATCCGAAGGATCTGGATTTATCTCTTTGGAGAATTTGCTGTTCTTAAGATCCTAAACTTCATTTGATACCTCTCATAAATTTTCAGATTCTTTTCACCTGAATGGGCCAACAAATTTATGAAATTAAGTTCAAAACTCCCAATAGATGACCGAGTATAGCATGCTATTACGCCTTTACTAATCCTTGTTGCCTTTTTTATGGTTTCAGACATCTTTCCAACGTCTGTTAAGGAAACAAGGAAGAAAACCAGCTGCTTAGGAATACCACTTTGCTTTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTCGATCTAGATGGTTGTGAGTTGAAAATCCATTTCTGCGTAGTGACAGTTCACCAATGGAGCATCATTGCTTAATATTTTCTAAGTAGAGCACTGCCGTTTTGATATTTTATAGAAACTTGTATATTTTTTGAAAGAGAACTAAGGCAGCTCACCTTTTCAAATGCAGCAAACCAAGGACTTCTATCAGATCAGTGTTCCTTCAGATGTTGTCAGGTACATATCTAAACTTAATCCAGGAACATATCAAATATGAAGTTGTGCATGAATGCAAGAAACACAATTTTCTGATAACAGAGAATAATTTCATGTTGGAATGCCTAAGCTACGTGATGTTCTTTGTATCATTACAAATTTATCAGTACAGGTAGGTGATTTAATGTTGTGGCATTGTTCATGTAGATACTATTATGGATTTTAGTACTGGGAAATAGGATCTGAAGAAATTAGTTTTATAATTGCTTCTACATTTCACTTCCCCTAACGATCACAAGTTCATTCTTCAGCACAAGAATGGACCAATATTTTCCTATTGTTGAGAAGTTTGATTCAAATCTGAAGATTTCTTGCTTAATTTTCTATGGTTAACAATTATTTTTTTTTGCGAACATAAATATCTCATTGGTTAAATTAGTATTCCTACCTATTTTCTTTAAGATGTGAGATGCTATATTACAAAATGGCAATTATTGTCATTTTAATTTGGTGTAAATCCTATTTTGGTTTCTCCAACTTTCAAGTTTATTCTATTTGGTTATCAAATTTTCAAAATATTCATTTTGGTCATTTAGATTTATTCTAGGTTGATCCTGAGCTTTTAAAATGTTTAATTTAGCCCTATGAGATTTCTAAAAAGATAGGTTCGAGGATGTATACATGTTAATATAAACATAATTTCAAGTCATATGAGATTTCTAAAAAGATAAGTTTGAGTATGTATACATGTTAATATAAACATAACTTCAAGTCATATGAATCAGGAACAAATATTTGACAAGTTGATATTAGATGGAAAGATAATACGGTTATGACCAAAATAAACATTTTGAAAGTTTGACCAAAATGGAACTTGAAAGTTTACTAACTAAAATAGTATTTAATCCTTCTAAAATTTTCCAAATTTTGAATCTTATTAAAAAAGTTAAAAAATTATTTTGATTAAAGTACTTTTGAACTTATTTTTATTTTAGTCATTAAACTTAGTTTGAATTTAATTTTTGCCCAACTTGACAGCAAAAAAAAAAAACAGTAATGATATATATCCATTTAAGAAAAGATACGATATGAATATCATTTGAACATTTGTAGAGGAAAGATTAATATATATATATATAGTTAACCATAGACCAATTTAAGATTTAGTCAAAGTATATGAACTAAAATATCACCCAAAAAAAAAAAAAAAACAATAGGTCTGAGCATCTACTTTTAAACTCTTTTTTTTCTCCTAAAGGCTAAAGATATTTATTAAATAAAAATTTGAAGGGCATGCGGTTTCAAGTGCTTTTGTTACTGTGTACAAAGTAAAGCTTCTTTTGTCTCTTTTCCCTCTCTACTTTTTTTTCTTCTTGAATAATCCTGATGGTAGTCAATTCGCTGGAGGCTGTACTTGATAGGATGCACTACTTTCTGTTTATATTTTTTCTTTTGGGAGTTCGTCTGCAACTTACTTCCTGTCCTGCTAGTGATTTAAACTGTGATGATTGGTTCTAGTTTTGTTGTGTCCCCGCTCCTTTATGTGCCTATTATGAACAAGATTTTGCCTTAGATCCTTGCAAAAATTACTCTGTTCCTAGCAATGTGGGGTTATTGCTGCATATCCTGCAAGGAAAGATTTGATTTCGATATCTGCCGGATTCTTTTTGTGCGATTATGATTTGAAAACATATTGTTTGTCATAGATTCCTTCATTTGAAGCCTTGGTGTATAATTAACTGAACGTTATTCTTATTCCTAAGATTGCTTCTGATTACTTTACATATACGATTTGAGAAAAAAACATTTCCATATGCTTCAAAATGCATACCTTTTGGGCGTATCTAGATGCATGATTAGAGATTTAATAAAGAAAAAGTGGTAAAGAGAAACTTATTGGCTATTAAGCAGTGGCCATTAAGCTTGCACTACATGAAATAAGTTCTGGATTAAGCAACCTTTTTAATTTATTAAATACTTTGTTTCTTTATTCTGGGTGGCCCCGTACATATGGCTGCCACTTTTTGATGTTCTTATCCTAAGAAAGCAACATTTTTCCACAACAGTTCTTAATTTGACTGTATTTTACATTATACGAAGGTAGAGGAACTTTATCACTCGCCCAACCATGCACGTTCTTATCATAGCTAGCCTTTAGCCTTTCCCTATACAGTAGGATTAGGTTGTCTGGTGAGTTTAAGTTTAGTTAAAGGCTTGTGTGTTGGTTGGGGATGTTGAGGATTATTGAGAAGAGTAGTCTCGCATTGGCTAATTAAGAGGAAGATCATGAAAACACTATCTCCATTGGTACAAGGCCTTTTGAGAAAACTAAAAGCAAATCCTTGAAAGTTTATGCTTAAAGTAGACAATATTATACCATCCTGAAGGTTTGTGGTTTCTAACATGATATTAGAGTCATGTCCTTAACTTAGTTATCTCAATATAATTCTCAAGTGTCGAACAAAGAAATTGTGAATCTCGAAAATGTAGTCAAATGTGACTCAAGTGTCGAACAAATGGTGTATTTTGTTCGAGGGCTCCAGAGAAGGAGTAGAGTCTCGCTTAAGGGGAGACTGTTTGAGAGCTCTAGAGAAAGGGACCTCAGGAGTGACTCTATGGTGTACTTTGTTCAAGAGGAGGATTGTTGAGGATTATTGAGAGAAGTAGTCTCATATTGGCTAATTGAAGATCACGAGGACACTATTTTCATTGGTATGAGGTCTTTAAGAGAAACCAAAAGCAAATTCCAAAGAGCATATGCTCAAAGTGGACAATATCGTACCATCACGAAGGTCCGTGGTTTTTAATTGAAGACACCTTGGTGGTATTAGTAGTGTCAATGGACACCCTGGTATTAGTGGTGCGGATGAAGAAGATCTTGAGCACACCTTGCTACTAGTGGAAAGAAGCCTCATGGGAAGAAAGCAACAGATAACAGTCACGGGGGGTGGTCCAGCGACTGGGTTAGTGGATATAAAAAAGATTAGAATAGGGATATTATTCAAATGTAAAAGCTAGCCAGCATTCCGAATTCTGTTGCAGGGGGAAAATTCTTGATTCCTGTTAGTCGAGTTCTAATTGGTGGTCTTTGTCCCAAAATTATAATCACCAGCCTGGGAAAACCACAGGTCATTTAGCACGCCAGCGAATATGCGAGTAAGTGGGAGATTTTATATTCCCTGCTTTGAGCAAAGTAGAATCGTCATCCTCCCAAATTGAGAGATCCATTTTATATTATACAACCCAAGTAGAGGAAGCCACGCGTCTTGTTTGGCACATCCCAAGCTTGTACATATATTGGTATTGGAGCTCTTTTGTTGTAATAATATGATATGCAGTGTGGATCATAGGCCCCAATAATGGGGGGATGCTTTGTGGATGGACTGCTGGCGATTATTATATAGTGGGTGCTCCTGTCGGCTAGACTCTTCTTTTGTGCTGATTTATGTGTATTACTTATATGAGTGAGTGGGGTAAAAAGGGGCACTGCCACACAACATTTGTACGAGATGATGTAGTAACTGTGGGGCAGGGTGGCATCAAGCGGTGACATAATCATATGGATTTGACGGTTATTAGTGAATTGGCCCTTGTAAAATATATTGAACCTCAGCCCTTCACTGCTAACTTATCTTATGCTATTCTCAGTAGTATTGAATCCTGCACTAATGGATGTCATTGTGATTCCACTAAATGAGTTTCTGTTATATATGTCCCATTTTACCTTTTTTTTTTTTCTTTTTTTCTTACCTCTAACTCTTTAGTTGAGAGTTTATAACGTATCGGATCAGCGTGGGATCTATGAACGTAAGTATCCTAATTGCTCGTTGCCTATTTTAGGTAATAGTGGACTTTCTATTAGTTATTGGTCTAATTTTCTCATTTTCATAACATTATCTTCCTATTAATATCAATTTCTCTTATTTTCAATAGATGAAAGATTATTGGAGCAGTCGTCTGACCTTTTGTATCAGGTAGCATACACCAATTCATGTGCACAAAGGTACGAATCCTAGACGTTTATTAATATATATAGAGAGAGATTTAGAGAAGTCTCCATAACTTGCCCAACCAATTCATGTGCAAAAAGTTCTCC

mRNA sequence

ACTCTCATTTGATTTGCAGACGGTGGGATGATGAGCGCGAGAGATGAGGAATCAGAGAACTACGGAGATTATTCGGCGCTGCGCACACATTTCCTTCGCCGTCTCTGGAAGATAGGACAGGATGCTCTAAGAGCTCTGTGGTATGCAGCTTATCCTGATCAAGAGCGTCAGGCGTGGTATCAGATCAATGGAAAGAAATTGGATGGCAGTGAAGAAATCCATCGACTGATTTTAGACATCTTTCCAACGTCTGTTAAGGAAACAAGGAAGAAAACCAGCTGCTTAGGAATACCACTTTGCTTTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTCGATCTAGATGGTTCAAACCAAGGACTTCTATCAGATCAGTGTTCCTTCAGATGTTGTCAGGGGGAAAATTCTTGATTCCTGTTAGTCGAGTTCTAATTGGTGGTCTTTGTCCCAAAATTATAATCACCAGCCTGGGAAAACCACAGTTGAGAGTTTATAACGTATCGGATCAGCGTGGGATCTATGAACGTAAGTATCCTAATTGCTCGTTGCCTATTTTAGATGAAAGATTATTGGAGCAGTCGTCTGACCTTTTGTATCAGGTAGCATACACCAATTCATGTGCACAAAGGTACGAATCCTAGACGTTTATTAATATATATAGAGAGAGATTTAGAGAAGTCTCCATAACTTGCCCAACCAATTCATGTGCAAAAAGTTCTCC

Coding sequence (CDS)

ATGATGAGCGCGAGAGATGAGGAATCAGAGAACTACGGAGATTATTCGGCGCTGCGCACACATTTCCTTCGCCGTCTCTGGAAGATAGGACAGGATGCTCTAAGAGCTCTGTGGTATGCAGCTTATCCTGATCAAGAGCGTCAGGCGTGGTATCAGATCAATGGAAAGAAATTGGATGGCAGTGAAGAAATCCATCGACTGATTTTAGACATCTTTCCAACGTCTGTTAAGGAAACAAGGAAGAAAACCAGCTGCTTAGGAATACCACTTTGCTTTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTCGATCTAGATGGTTCAAACCAAGGACTTCTATCAGATCAGTGTTCCTTCAGATGTTGTCAGGGGGAAAATTCTTGATTCCTGTTAGTCGAGTTCTAATTGGTGGTCTTTGTCCCAAAATTATAATCACCAGCCTGGGAAAACCACAGTTGAGAGTTTATAACGTATCGGATCAGCGTGGGATCTATGAACGTAAGTATCCTAATTGCTCGTTGCCTATTTTAGATGAAAGATTATTGGAGCAGTCGTCTGACCTTTTGTATCAGGTAGCATACACCAATTCATGTGCACAAAGGTACGAATCCTAG

Protein sequence

MMSARDEESENYGDYSALRTHFLRRLWKIGQDALRALWYAAYPDQERQAWYQINGKKLDGSEEIHRLILDIFPTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSGGKFLIPVSRVLIGGLCPKIIITSLGKPQLRVYNVSDQRGIYERKYPNCSLPILDERLLEQSSDLLYQVAYTNSCAQRYES
Homology
[Close]
BLAST of CmoCh18G006860 vs. ExPASy TrEMBL
Match: A0A6J1G077 (uncharacterized protein LOC111449485 OS=Cucurbita moschata OX=3662 GN=LOC111449485 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 83/139 (59.71%), Postives = 84/139 (60.43%), Query Frame = 0 

Query: 68  ILDIFPTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSGG 127
           + DIFPTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLS  
Sbjct: 20  VSDIFPTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLS-- 79

Query: 128 KFLIPVSRVLIGGLCPKIIITSLGKPQLRVYNVSDQRGIYERKYPNCSLPILDERLLEQS 187
                                                               DERLLEQS
Sbjct: 80  ----------------------------------------------------DERLLEQS 104

Query: 188 SDLLYQVAYTNSCAQRYES 207
           SDLLYQVAYTNSCAQRYES
Sbjct: 140 SDLLYQVAYTNSCAQRYES 104

[Close]
BLAST of CmoCh18G006860 vs. ExPASy TrEMBL
Match: A0A287WWX4 (ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 0 

Query: 31  QDALRALWYAAYPDQERQA-----WYQINGKKLDGSEEIHRL-------------ILDIF 90
           Q+ALRALWYA YPDQE Q      W  +  +  D S +  R              IL + 
Sbjct: 177 QEALRALWYATYPDQELQGLVSEQWKDMGWQGRDPSTDFRRRIHISRESSILCKDILCVI 236

Query: 91  PTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARS 108
             +  ET +++S LG+P+C CWCKYHI+DHA+A S
Sbjct: 237 SEATTETMRQSSHLGVPVCSCWCKYHIHDHADAGS 271

[Close]
BLAST of CmoCh18G006860 vs. ExPASy TrEMBL
Match: A0A287WWX6 (ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 0 

Query: 31  QDALRALWYAAYPDQERQA-----WYQINGKKLDGSEE-------IH---------RLIL 90
           Q+ALRALWYA YPDQE Q      W  +  +  D S +       IH         + IL
Sbjct: 157 QEALRALWYATYPDQELQGLVSEQWKDMGWQGRDPSTDHLLQRRRIHISRESSILCKDIL 216

Query: 91  DIFPTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARS 108
            +   +  ET +++S LG+P+C CWCKYHI+DHA+A S
Sbjct: 217 CVISEATTETMRQSSHLGVPVCSCWCKYHIHDHADAGS 254

The following BLAST results are available for this feature:
BLAST of CmoCh18G006860 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh18G006860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G0772.2e-3459.71uncharacterized protein LOC111449485 OS=Cucurbita moschata OX=3662 GN=LOC1114494... [more]
A0A287WWX41.6e-1142.11ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 ... [more]
A0A287WWX61.0e-1041.84ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 ... [more]
BLAST of CmoCh18G006860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G006860.1CmoCh18G006860.1mRNA