CmoCh18G006820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G006820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	F-box protein At1g67340-like
Location	Cmo_Chr18: 8741653 .. 8743658 (+)
RNA-Seq Expression	CmoCh18G006820
Synteny	CmoCh18G006820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGGATTTGCTTTTTCTCTTTTACCACAACAAGAGAGAAACCCACATCGGATTCATCCATGAGAACTCGAACAGGCCTCTGTTACCCTCGACTTGAAACCACCCTCTGCTCCGACACCCGTCATCGCAAAAGAACTCACGATGTCGCCGCCGACCGCCGCCCCCATTTTTGTCGGAAACGAACCAAGCTCTCTCCACAAATCACTCCGCCACCGCCTTCCGATTTGTTTGATTCCTTGCCTGACGACCTCGTCATTTCGATTCTCTCTAAACTCAGCTCCGCCGCCTCTTCCCCCTCCGATTTCATCAACATCTTGCTAACGTACGCCTTTTATCATTTTTTTTTTTTTTTTTTTTTAAATTTTATTGGTTCAATCTATTTTTAGGTTTAATTTTGGTAATGGGTTTAATTTAAAATTTGTTATTATTTGTTGCAGATGCAAAAGATTAAATAATTTAGGACTTATTCCCATAGTTTTATCCAAAGCTTCCCAGAAGACGTTTGCAATTAAGGCACGGAATTGGTCTGAATCCGCTCATCGGTTTCTCAAGCGGTGTTCCGACGCCGAAAATATTGATGCCAGTTATACCCTCGGCATGGTTAGTTATATATATATATATATATTAATTTAAATTTATTCTAATTTCATTTTGTAAGCTATGAAAATTCCGTTTATTTTCCGATTTTAAAAATTAATTCGAAATTGGGGAATGGCCGTACAGATTCGTTTCTACTGTTTGCAAAACAGAGGAAGTGGAGCTTCGCTGATGGCTAAAGCGGCGATTTGTTCCCACGCGCCGGCGCTTTACTCACTCGCTGTCATTCAGTTCAACGGCAGCGGCGGTTCCAAAAGCGATAAGGATCTCCGTGCCGGAGTTGCTTTATGCGCACGTGCTGCTTTTCTCGGTCACATCGACGCGCTGAGAGAACTCGGGCATTGTCTTCAAGACGGTTACGGCGTTCGTCAGAATATAACAGAGGGTCGTCGGTTTCTTGTCCAGGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCGTCGGAGGCGGGTTCTTCGGTTATTGCATCACGGTGTTGTGTTACGTGGAACCCTCACGTTCCACACCGGCACGTAACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGAAGCGCATCCGGTGAGTCGGTTTATGGCGGAGTGGTTTGGGGCACGTGGGGAGTCGCCGGGGATTGGGCTGAGGATGTGTTCGCACGTGGGATGTGGACGGCCGGAAACGAGACAGCATGAGTTCCGTCGATGTTCTGTTTGTGGCTCTGTAAATTACTGCTCACGTGCGTGTCAGGCGCTGGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTTGAACGTTGGGTTGATGATAACGGCGACGGTGGGGCCGATGATATCATGGCCGAAAGTTGAAAAAAAAAATAATAATTCGAAAATTAAAAAGGGGAATTGACAGTAGCCGGTTGCCGGTTGTAAACGATGGCGGCTTCTCGTGAAATTTAGTCGAGGAGACGTAAAAGTAAAGCGAGAGAATAAAAAAATAAAAAAAAATAAAAAATAAAAAAGAAAAGCGTGGAGGCCGTTTTTTGTCGGAGAAATTAATTATCTGATGTAACCATGGCCAGCGAATAGGCGCGGCGGAGATTTGTTTGTCCTTTTCTGTACAGGGCGGCGGGCGGCGGCGGCGGTTTTTTTTTAGGGAAGTTCTGGAGCCTAATTTTTGTACCATACAGCGACTAGAATTTTACAATCCTTCCCTTTTTTTTCAGTTATTAATATTATAAATTAAAAAAGTTTTTTTTTCTATATTTTTTATTCTGTTGCATTTTTTTTTGGTAATTATAAAAATTACAAAAATAAAAACATGGAGAAAAATTATTATTCGTGGGAACTTAATTCTTGCAAATTTTTCGGGGATATCGTGTCCCGATCCATGCGAAGAAAAAAAAAACAAAACGAGGGGATGGGGAAG

mRNA sequence

CACCGGATTTGCTTTTTCTCTTTTACCACAACAAGAGAGAAACCCACATCGGATTCATCCATGAGAACTCGAACAGGCCTCTGTTACCCTCGACTTGAAACCACCCTCTGCTCCGACACCCGTCATCGCAAAAGAACTCACGATGTCGCCGCCGACCGCCGCCCCCATTTTTGTCGGAAACGAACCAAGCTCTCTCCACAAATCACTCCGCCACCGCCTTCCGATTTGTTTGATTCCTTGCCTGACGACCTCGTCATTTCGATTCTCTCTAAACTCAGCTCCGCCGCCTCTTCCCCCTCCGATTTCATCAACATCTTGCTAACATGCAAAAGATTAAATAATTTAGGACTTATTCCCATAGTTTTATCCAAAGCTTCCCAGAAGACGTTTGCAATTAAGGCACGGAATTGGTCTGAATCCGCTCATCGGTTTCTCAAGCGGTGTTCCGACGCCGAAAATATTGATGCCAGTTATACCCTCGGCATGATTCGTTTCTACTGTTTGCAAAACAGAGGAAGTGGAGCTTCGCTGATGGCTAAAGCGGCGATTTGTTCCCACGCGCCGGCGCTTTACTCACTCGCTGTCATTCAGTTCAACGGCAGCGGCGGTTCCAAAAGCGATAAGGATCTCCGTGCCGGAGTTGCTTTATGCGCACGTGCTGCTTTTCTCGGTCACATCGACGCGCTGAGAGAACTCGGGCATTGTCTTCAAGACGGTTACGGCGTTCGTCAGAATATAACAGAGGGTCGTCGGTTTCTTGTCCAGGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCGTCGGAGGCGGGTTCTTCGGTTATTGCATCACGGTGTTGTGTTACGTGGAACCCTCACGTTCCACACCGGCACGTAACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGAAGCGCATCCGGTGAGTCGGTTTATGGCGGAGTGGTTTGGGGCACGTGGGGAGTCGCCGGGGATTGGGCTGAGGATGTGTTCGCACGTGGGATGTGGACGGCCGGAAACGAGACAGCATGAGTTCCGTCGATGTTCTGTTTGTGGCTCTGTAAATTACTGCTCACGTGCGTGTCAGGCGCTGGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTTGAACGTTGGGTTGATGATAACGGCGACGGTGGGGCCGATGATATCATGGCCGAAAGTTGAAAAAAAAAATAATAATTCGAAAATTAAAAAGGGGAATTGACAGTAGCCGGTTGCCGGTTGTAAACGATGGCGGCTTCTCGTGAAATTTAGTCGAGGAGACGTAAAAGTAAAGCGAGAGAATAAAAAAATAAAAAAAAATAAAAAATAAAAAAGAAAAGCGTGGAGGCCGTTTTTTGTCGGAGAAATTAATTATCTGATGTAACCATGGCCAGCGAATAGGCGCGGCGGAGATTTGTTTGTCCTTTTCTGTACAGGGCGGCGGGCGGCGGCGGCGGTTTTTTTTTAGGGAAGTTCTGGAGCCTAATTTTTGTACCATACAGCGACTAGAATTTTACAATCCTTCCCTTTTTTTTCAGTTATTAATATTATAAATTAAAAAAGTTTTTTTTTCTATATTTTTTATTCTGTTGCATTTTTTTTTGGTAATTATAAAAATTACAAAAATAAAAACATGGAGAAAAATTATTATTCGTGGGAACTTAATTCTTGCAAATTTTTCGGGGATATCGTGTCCCGATCCATGCGAAGAAAAAAAAAACAAAACGAGGGGATGGGGAAG

Coding sequence (CDS)

ATGAGAACTCGAACAGGCCTCTGTTACCCTCGACTTGAAACCACCCTCTGCTCCGACACCCGTCATCGCAAAAGAACTCACGATGTCGCCGCCGACCGCCGCCCCCATTTTTGTCGGAAACGAACCAAGCTCTCTCCACAAATCACTCCGCCACCGCCTTCCGATTTGTTTGATTCCTTGCCTGACGACCTCGTCATTTCGATTCTCTCTAAACTCAGCTCCGCCGCCTCTTCCCCCTCCGATTTCATCAACATCTTGCTAACATGCAAAAGATTAAATAATTTAGGACTTATTCCCATAGTTTTATCCAAAGCTTCCCAGAAGACGTTTGCAATTAAGGCACGGAATTGGTCTGAATCCGCTCATCGGTTTCTCAAGCGGTGTTCCGACGCCGAAAATATTGATGCCAGTTATACCCTCGGCATGATTCGTTTCTACTGTTTGCAAAACAGAGGAAGTGGAGCTTCGCTGATGGCTAAAGCGGCGATTTGTTCCCACGCGCCGGCGCTTTACTCACTCGCTGTCATTCAGTTCAACGGCAGCGGCGGTTCCAAAAGCGATAAGGATCTCCGTGCCGGAGTTGCTTTATGCGCACGTGCTGCTTTTCTCGGTCACATCGACGCGCTGAGAGAACTCGGGCATTGTCTTCAAGACGGTTACGGCGTTCGTCAGAATATAACAGAGGGTCGTCGGTTTCTTGTCCAGGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCGTCGGAGGCGGGTTCTTCGGTTATTGCATCACGGTGTTGTGTTACGTGGAACCCTCACGTTCCACACCGGCACGTAACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGAAGCGCATCCGGTGAGTCGGTTTATGGCGGAGTGGTTTGGGGCACGTGGGGAGTCGCCGGGGATTGGGCTGAGGATGTGTTCGCACGTGGGATGTGGACGGCCGGAAACGAGACAGCATGAGTTCCGTCGATGTTCTGTTTGTGGCTCTGTAAATTACTGCTCACGTGCGTGTCAGGCGCTGGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTTGAACGTTGGGTTGATGATAACGGCGACGGTGGGGCCGATGATATCATGGCCGAAAGTTGA

Protein sequence

MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSLPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSESAHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAEWFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDCAPVERWVDDNGDGGADDIMAES

Homology

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BLAST of CmoCh18G006820 vs. ExPASy Swiss-Prot
Match: Q9FYF9 (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 5.6e-137
Identity = 249/366 (68.03%), Postives = 284/366 (77.60%), Query Frame = 0


Query: 23  RKRTHDVAADRRPHFCRKRTKLSPQITPPPP-----SDLFDSLPDDLVISILSKLSSAAS 82
           RK     + D  P   R+R  + P    P P     +DL DS+PDDLVISIL KL S + 
Sbjct: 5   RKTKRVFSCDFTPGRKRRRCVVVPSSVSPVPENTTGADLLDSIPDDLVISILCKLGSTSR 64

Query: 83  SPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSESAHRFLKRCSDAENIDAS 142
            P+DFIN+LLTCKRL  L + PIVLS+ S K  A+KA NWSE +HRFLKRC DA +++A 
Sbjct: 65  CPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWSEYSHRFLKRCVDAGSLEAC 124

Query: 143 YTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKSDKDLRAGVALC 202
           YTLGMIRFYCLQNRG+GASLMAKAAI SHAPALYSLAVIQFNGSGGSK+DKDLRAGVALC
Sbjct: 125 YTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALC 184

Query: 203 ARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAGSSVIASR 262
           ARAAFLGH+DALRELGHCLQDGYGV QN++EGRRFLVQANARELAAVLSS   +      
Sbjct: 185 ARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLVQANARELAAVLSSGIQARSTWLS 244

Query: 263 CCVTWNPHVP-HRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAEWFGAR-GESPGIGLRM 322
                 P VP H   T   CPLLSDFGCN+PAPE HP +RF+A+WF  R G+ PG GLR+
Sbjct: 245 LSQPPPPVVPNHGQQT---CPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRL 304

Query: 323 CSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDCAPVERWVDDNGDGGA 382
           CSH GCGRPETR+HEFRRCSVCG VNYCSRACQALDWKLRHKMDCAPV+RW+++ GDGG 
Sbjct: 305 CSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDCAPVQRWLEE-GDGGE 364

[Close]

BLAST of CmoCh18G006820 vs. ExPASy Swiss-Prot
Match: Q9FK27 (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.3e-109
Identity = 199/320 (62.19%), Postives = 238/320 (74.38%), Query Frame = 0


Query: 57  FDSLPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARN 116
           F+ L DDL+ISIL KL+++ASSPSDF+ +L TCKRLN LGL P+VLSKA  +T A+ A  
Sbjct: 22  FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query: 117 WSESAHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVI 176
           WS+S+H+FLK C +A NIDASY+LGMIRFYCLQN  SGASLMAKAAI SHAPALYSL+VI
Sbjct: 82  WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query: 177 QFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQA 236
           QFNGSGGSK+DK+LRAGVALCAR+A+LGH+DALRELGHCLQDGYGV ++++EGRR L+QA
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query: 237 NARELAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSR 296
           NARELA  L S                        +G     L+D    +P  E HPV+R
Sbjct: 202 NARELACSLRSYLSLK-------------------SGDENETLTDLSV-VPVQEIHPVNR 261

Query: 297 FMAEWFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRH 356
           F+ EWF +       GLRMCSH GCGRPETR HEFRRCSVCG VNYCSR CQALDW+ +H
Sbjct: 262 FLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKH 321

Query: 357 KMDCAPVERWVDDNGDGGAD 377
           K++C P++ WV    + G D
Sbjct: 322 KVECTPLDLWVAAAAEIGDD 321

[Close]

BLAST of CmoCh18G006820 vs. ExPASy Swiss-Prot
Match: Q2YDC9 (Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-04
Identity = 21/53 (39.62%), Postives = 28/53 (52.83%), Query Frame = 0


Query: 312 GLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDCAPVE 365
           G  +C   GC  P       +RCS C   +YCS+  Q+LDW+L HK  CA  +
Sbjct: 131 GAHLCRVCGCSGP-------KRCSRCHKAHYCSKEHQSLDWRLGHKQACAQTD 176

[Close]

BLAST of CmoCh18G006820 vs. ExPASy Swiss-Prot
Match: Q9FPS9 (Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana OX=3702 GN=UBP15 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 2.5e-04
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 0


Query: 333 RCSVCGSVNYCSRACQALDWKLRHKMDCAPVE 365
           RCS C SV YCS  CQ + W++ HK +C PVE
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

[Close]

BLAST of CmoCh18G006820 vs. ExPASy Swiss-Prot
Match: Q9SJA1 (Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 5.6e-04
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 0


Query: 321 CGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDC 361
           CG+  T     ++CS C SV YCS ACQ  DWK  HK+ C
Sbjct: 67  CGKATT-----KKCSRCKSVRYCSAACQTSDWKSGHKLKC 101

[Close]

BLAST of CmoCh18G006820 vs. ExPASy TrEMBL
Match: A0A6J1FZ36 (F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111449223 PE=4 SV=1)

HSP 1 Score: 786.9 bits (2031), Expect = 3.7e-224
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0


Query: 1   MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSL 60
           MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSL
Sbjct: 1   MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSL 60

Query: 61  PDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSES 120
           PDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSES
Sbjct: 61  PDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSES 120

Query: 121 AHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG 180
           AHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG
Sbjct: 121 AHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG 180

Query: 181 SGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240
           SGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE
Sbjct: 181 SGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240

Query: 241 LAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAE 300
           LAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAE
Sbjct: 241 LAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAE 300

Query: 301 WFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDC 360
           WFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDC
Sbjct: 301 WFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDC 360

Query: 361 APVERWVDDNGDGGADDIMAES 383
           APVERWVDDNGDGGADDIMAES
Sbjct: 361 APVERWVDDNGDGGADDIMAES 382

[Close]

BLAST of CmoCh18G006820 vs. ExPASy TrEMBL
Match: A0A6J1HSL8 (F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111466400 PE=4 SV=1)

HSP 1 Score: 760.8 bits (1963), Expect = 2.8e-216
Identity = 370/383 (96.61%), Postives = 376/383 (98.17%), Query Frame = 0


Query: 1   MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITP-PPPSDLFDS 60
           MRTRTGLCYPRLETTLCSD+ HRKR HDVAADRR HFCRKRTKLSP ITP PPPSDLFDS
Sbjct: 1   MRTRTGLCYPRLETTLCSDSSHRKRNHDVAADRRRHFCRKRTKLSPHITPLPPPSDLFDS 60

Query: 61  LPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSE 120
           LPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIP+VLSKASQKTFAIKARNWSE
Sbjct: 61  LPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPMVLSKASQKTFAIKARNWSE 120

Query: 121 SAHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFN 180
           SAHRFLKRCSDA N+DASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFN
Sbjct: 121 SAHRFLKRCSDAGNVDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFN 180

Query: 181 GSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANAR 240
           GSGGSKSDKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGVRQNITEGRRFLVQANAR
Sbjct: 181 GSGGSKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNITEGRRFLVQANAR 240

Query: 241 ELAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMA 300
           ELAAVLSSEAGSSVIASR C+TWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMA
Sbjct: 241 ELAAVLSSEAGSSVIASRSCLTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMA 300

Query: 301 EWFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMD 360
           EWFGARGESPG+GLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMD
Sbjct: 301 EWFGARGESPGLGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMD 360

Query: 361 CAPVERWVDDNGDGGADDIMAES 383
           CAPVERWVDDNGDGGADDIMAES
Sbjct: 361 CAPVERWVDDNGDGGADDIMAES 383

[Close]

BLAST of CmoCh18G006820 vs. ExPASy TrEMBL
Match: A0A6J1KDE5 (F-box protein At1g67340 OS=Cucurbita maxima OX=3661 GN=LOC111492842 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 2.8e-184
Identity = 325/385 (84.42%), Postives = 345/385 (89.61%), Query Frame = 0


Query: 1   MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSL 60
           MRTR GLCYPRL+    SD R RKRTHD +ADR  HFCRKR KLSP I   P SDLFDSL
Sbjct: 1   MRTRRGLCYPRLDAAFFSDNRVRKRTHDASADR--HFCRKRNKLSPDI-KTPTSDLFDSL 60

Query: 61  PDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSES 120
           PDDLVISILSKL +AASS S+FINILLTCKRLN+LGL PIVLS+AS K FAI ARNW+ES
Sbjct: 61  PDDLVISILSKLGAAASSSSEFINILLTCKRLNSLGLNPIVLSRASLKIFAISARNWTES 120

Query: 121 AHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG 180
           AHRFLK+C+DA N++A YTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG
Sbjct: 121 AHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG 180

Query: 181 SGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240
           SGGSK+DK LRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE
Sbjct: 181 SGGSKNDKILRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240

Query: 241 LAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAE 300
           LAAVLSSEAGSSV ASR  +TWNPH  HRHVTGS CPLLSDFGCNIPAPEAHP S+F+AE
Sbjct: 241 LAAVLSSEAGSSVTASRTFLTWNPHPHHRHVTGSACPLLSDFGCNIPAPEAHPASQFLAE 300

Query: 301 WFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDC 360
           WF ARG SPG GLR+CSHVGCGRPETR+HEFRRCSVCG+VNYCSRACQALDWKLRHKMDC
Sbjct: 301 WFAARGGSPGDGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKMDC 360

Query: 361 APVERWVDDNGDGGAD---DIMAES 383
            PVERW+DDNGDGGAD   D+M ES
Sbjct: 361 VPVERWLDDNGDGGADGVVDMMDES 382

[Close]

BLAST of CmoCh18G006820 vs. ExPASy TrEMBL
Match: A0A6J1GZ25 (F-box protein At1g67340 OS=Cucurbita moschata OX=3662 GN=LOC111458825 PE=4 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 4.8e-184
Identity = 324/385 (84.16%), Postives = 343/385 (89.09%), Query Frame = 0


Query: 1   MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSL 60
           MRTR GLCYPRL+    SD R RKRTHD AAD    FCRKR K SP I   P SDLFDSL
Sbjct: 1   MRTRRGLCYPRLQPPFFSDNRVRKRTHDAAADADRQFCRKRNKPSPDI-KTPTSDLFDSL 60

Query: 61  PDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSES 120
           PDDLVISILSKLSSAASSPS+FINILLTCKRLN+LGL P+VLS+AS K FAI ARNW+ES
Sbjct: 61  PDDLVISILSKLSSAASSPSEFINILLTCKRLNSLGLNPVVLSRASLKIFAISARNWTES 120

Query: 121 AHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG 180
           AHRFLK+CSDA N++A YTLGMIRFYCLQNRGSGASLMAKAAI SHAPALYSLAVIQFNG
Sbjct: 121 AHRFLKQCSDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIYSHAPALYSLAVIQFNG 180

Query: 181 SGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240
           SGGSK+DK+L AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE
Sbjct: 181 SGGSKNDKNLGAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240

Query: 241 LAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAE 300
           LAAVLSSEAGSSV ASR C+TWNPH  HRHVTGS CPLLSDFGCNIPAPE HP S+F+AE
Sbjct: 241 LAAVLSSEAGSSVAASRTCLTWNPHPHHRHVTGSACPLLSDFGCNIPAPEVHPASQFLAE 300

Query: 301 WFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDC 360
           WF ARG SPG GLR+CSHVGCGRPETR+HEFRRCSVCG+VNYCSRACQALDWKLRHKMDC
Sbjct: 301 WFAARGGSPGDGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKMDC 360

Query: 361 APVERWVDDNGDGGA---DDIMAES 383
            PVERW+DDNGDGGA   DD+M ES
Sbjct: 361 VPVERWLDDNGDGGADGVDDMMDES 384

[Close]

BLAST of CmoCh18G006820 vs. ExPASy TrEMBL
Match: A0A0A0KTC5 (MYND-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589890 PE=4 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 4.2e-180
Identity = 325/386 (84.20%), Postives = 347/386 (89.90%), Query Frame = 0


Query: 1   MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSL 60
           MRTRTGL YP L+ T  + + +RKR H VAADR   FCRKR KLS  I   P SDLFDSL
Sbjct: 1   MRTRTGLSYPPLQPTAFA-SGNRKRKHHVAADR--PFCRKRNKLSYHI-KTPTSDLFDSL 60

Query: 61  PDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSES 120
           PDDLVI+ILS LSSAASSPSDFINILLTCKRLNNLGL P+VLS+ASQKTFAI+A+NW+ES
Sbjct: 61  PDDLVITILSNLSSAASSPSDFINILLTCKRLNNLGLNPMVLSRASQKTFAIRAKNWTES 120

Query: 121 AHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG 180
           AHRFLK+CSDA N++A YTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG
Sbjct: 121 AHRFLKQCSDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNG 180

Query: 181 SGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240
           SGGSK+DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE
Sbjct: 181 SGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARE 240

Query: 241 LAAVLSSEAGSSVIASRCCVTWNPHVP-HRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMA 300
           LAAVLSSEA SSV ASR C+TWN   P HRHVTGSGCPLLSDFGCNIPAPEAHP S+F+A
Sbjct: 241 LAAVLSSEAASSVAASRSCLTWNTQPPHHRHVTGSGCPLLSDFGCNIPAPEAHPASQFLA 300

Query: 301 EWFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMD 360
           EWF ARG SPG GLR+CSHVGCGRPETR+HEFRRCSVCG+VNYCSRACQALDWKLRHK+D
Sbjct: 301 EWFEARGGSPGNGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKID 360

Query: 361 CAPVERWVDDNGDG---GADDIMAES 383
           CAPVERW+DDNGDG    ADDIM ES
Sbjct: 361 CAPVERWLDDNGDGMDDVADDIMDES 382

[Close]

BLAST of CmoCh18G006820 vs. TAIR 10
Match: AT1G67340.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 488.8 bits (1257), Expect = 4.0e-138
Identity = 249/366 (68.03%), Postives = 284/366 (77.60%), Query Frame = 0


Query: 23  RKRTHDVAADRRPHFCRKRTKLSPQITPPPP-----SDLFDSLPDDLVISILSKLSSAAS 82
           RK     + D  P   R+R  + P    P P     +DL DS+PDDLVISIL KL S + 
Sbjct: 5   RKTKRVFSCDFTPGRKRRRCVVVPSSVSPVPENTTGADLLDSIPDDLVISILCKLGSTSR 64

Query: 83  SPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSESAHRFLKRCSDAENIDAS 142
            P+DFIN+LLTCKRL  L + PIVLS+ S K  A+KA NWSE +HRFLKRC DA +++A 
Sbjct: 65  CPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWSEYSHRFLKRCVDAGSLEAC 124

Query: 143 YTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKSDKDLRAGVALC 202
           YTLGMIRFYCLQNRG+GASLMAKAAI SHAPALYSLAVIQFNGSGGSK+DKDLRAGVALC
Sbjct: 125 YTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALC 184

Query: 203 ARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAGSSVIASR 262
           ARAAFLGH+DALRELGHCLQDGYGV QN++EGRRFLVQANARELAAVLSS   +      
Sbjct: 185 ARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLVQANARELAAVLSSGIQARSTWLS 244

Query: 263 CCVTWNPHVP-HRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAEWFGAR-GESPGIGLRM 322
                 P VP H   T   CPLLSDFGCN+PAPE HP +RF+A+WF  R G+ PG GLR+
Sbjct: 245 LSQPPPPVVPNHGQQT---CPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRL 304

Query: 323 CSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDCAPVERWVDDNGDGGA 382
           CSH GCGRPETR+HEFRRCSVCG VNYCSRACQALDWKLRHKMDCAPV+RW+++ GDGG 
Sbjct: 305 CSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDCAPVQRWLEE-GDGGE 364

[Close]

BLAST of CmoCh18G006820 vs. TAIR 10
Match: AT5G50450.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 397.9 bits (1021), Expect = 9.2e-111
Identity = 199/320 (62.19%), Postives = 238/320 (74.38%), Query Frame = 0


Query: 57  FDSLPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARN 116
           F+ L DDL+ISIL KL+++ASSPSDF+ +L TCKRLN LGL P+VLSKA  +T A+ A  
Sbjct: 22  FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query: 117 WSESAHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVI 176
           WS+S+H+FLK C +A NIDASY+LGMIRFYCLQN  SGASLMAKAAI SHAPALYSL+VI
Sbjct: 82  WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query: 177 QFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQA 236
           QFNGSGGSK+DK+LRAGVALCAR+A+LGH+DALRELGHCLQDGYGV ++++EGRR L+QA
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query: 237 NARELAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSR 296
           NARELA  L S                        +G     L+D    +P  E HPV+R
Sbjct: 202 NARELACSLRSYLSLK-------------------SGDENETLTDLSV-VPVQEIHPVNR 261

Query: 297 FMAEWFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRH 356
           F+ EWF +       GLRMCSH GCGRPETR HEFRRCSVCG VNYCSR CQALDW+ +H
Sbjct: 262 FLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKH 321

Query: 357 KMDCAPVERWVDDNGDGGAD 377
           K++C P++ WV    + G D
Sbjct: 322 KVECTPLDLWVAAAAEIGDD 321

[Close]

BLAST of CmoCh18G006820 vs. TAIR 10
Match: AT1G17110.1 (ubiquitin-specific protease 15 )

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-05
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 0


Query: 333 RCSVCGSVNYCSRACQALDWKLRHKMDCAPVE 365
           RCS C SV YCS  CQ + W++ HK +C PVE
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

[Close]

BLAST of CmoCh18G006820 vs. TAIR 10
Match: AT1G17110.2 (ubiquitin-specific protease 15 )

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-05
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 0


Query: 333 RCSVCGSVNYCSRACQALDWKLRHKMDCAPVE 365
           RCS C SV YCS  CQ + W++ HK +C PVE
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

[Close]

BLAST of CmoCh18G006820 vs. TAIR 10
Match: AT2G24640.1 (ubiquitin-specific protease 19 )

HSP 1 Score: 47.0 bits (110), Expect = 4.0e-05
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 0


Query: 321 CGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDC 361
           CG+  T     ++CS C SV YCS ACQ  DWK  HK+ C
Sbjct: 67  CGKATT-----KKCSRCKSVRYCSAACQTSDWKSGHKLKC 101

The following BLAST results are available for this feature:

BLAST of CmoCh18G006820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYF9	5.6e-137	68.03	F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1	[more]
Q9FK27	1.3e-109	62.19	F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1	[more]
Q2YDC9	1.9e-04	39.62	Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1	[more]
Q9FPS9	2.5e-04	56.25	Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana OX=3702 GN=UBP1...	[more]
Q9SJA1	5.6e-04	50.00	Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP1...	[more]

BLAST of CmoCh18G006820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ36	3.7e-224	100.00	F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111449223 PE=4 ...	[more]
A0A6J1HSL8	2.8e-216	96.61	F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111466400 PE=4 SV...	[more]
A0A6J1KDE5	2.8e-184	84.42	F-box protein At1g67340 OS=Cucurbita maxima OX=3661 GN=LOC111492842 PE=4 SV=1	[more]
A0A6J1GZ25	4.8e-184	84.16	F-box protein At1g67340 OS=Cucurbita moschata OX=3662 GN=LOC111458825 PE=4 SV=1	[more]
A0A0A0KTC5	4.2e-180	84.20	MYND-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589890 P...	[more]

BLAST of CmoCh18G006820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67340.1	4.0e-138	68.03	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT5G50450.1	9.2e-111	62.19	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT1G17110.1	1.8e-05	56.25	ubiquitin-specific protease 15	[more]
AT1G17110.2	1.8e-05	56.25	ubiquitin-specific protease 15	[more]
AT2G24640.1	4.0e-05	50.00	ubiquitin-specific protease 19	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.2220		coord: 311..365 e-value: 1.8E-10 score: 42.3
None	No IPR available	PANTHER	PTHR46758:SF2	OSJNBA0044M19.1 PROTEIN	coord: 1..374
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 118..236
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 314..365
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 100..253 e-value: 1.0E-15 score: 60.3
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 321..360 e-value: 6.7E-8 score: 32.5
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 318..360 score: 10.937226
IPR044508	F-box protein At5g50450/At1g67340-like	PANTHER	PTHR46758	MYND DOMAIN-CONTAINING	coord: 1..374
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 48..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G006820.1	CmoCh18G006820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding