CmoCh18G006750 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G006750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pollen Ole e 1 allergen and extensin family protein
Location	Cmo_Chr18: 8617361 .. 8619021 (+)
RNA-Seq Expression	CmoCh18G006750
Synteny	CmoCh18G006750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTTACTTTTAGCACTAATCAATGGCTTCTCTTAAGCTCTTCATTATTGCTTTTCTCTTGTTCATAGTTCTTGCAAGAACTCAACTTGCACAATGCAACACTTTGAAGGCCAGCATCTCTTGCCTTGATTGTCAATCCAACTATGATTTCTCAGGTCTTTGCAACCTTTTGACTTACGTTTCGTTTTTATTTCGTGTTGTTTGTATCGTGTTTTGTGAGATTCCATGTTGTTAGAGAGAAGAACTGAACATTTCTTATAAAGGTGTGGAAACCTCTCTCTAGTAGACACGTTTTAAAAATGTTGAGGGAGAGTCTAAAAAAGAGTCTATTAAGGGTGGATTTGGACTGTTACAAATGATATTAGAGCCTAGCACCGAGCGGTGTGCTAGTGAGCACACTAGGCCTCCAAAGGGGCGGGTGTGGAAACCTCTTACTCGTTGCCGCGTTTTAAAACCTTGAGAGGAAGCCCAAAGTGTGGAAACCTCCCCCTAGTACACGAATTTTAAAACTTTGAGGAAAAGCTCAAATAGGACAATATCTGCTAGTAATGGACTTGGACTGTTACAAAGGTAGTAGAGCCAAGCACCTAGCGGTCGACTAGTGAGGACGCTGGGTCCCAAGGGGGTGGGTGTGGAAGCCTTTCTATGGCAAACACGTTTTAAAACCTTGAGGGGAAGCCTAAAAGAAAAAACCCAAAAAGGATACTATCAGCTAGCTGTGAGCTTGGATTAATGTAAATGGTATCAGGACTAGAAATTGGACAGTGTGCCAGCCAGGACACACCCTGGACTGATATAAATGGTATAAGAACCATATTTTGGGCAGTGTGCCAGCTAGGACACTGGCACTAAAGGAGTTAGATGTGGAAACCTCTCCATAATAGACGAGGAAAAGCCCAAAGAAAACAACATCAGCTAACGATGGGCTTAGACTATTATATGTTTCTACAAGGAAAAACAAAAATTTATATGATAACTACTTAATGAACTCGTAGTATTTAAACAATTAAAAGTGTTTTTGAACCGTTAAAAAGTTTCTAAAAATGATTTATTTTTCTTTCAGGAAACATGGTCGAAGTAAACTGCAAGAACGTAAAGAACCTAAGCATTGCAATTACCGAAGCGAATGGATCATTCAAAACTACGCTTCCTTCCAACGCAGCCTCCGATGACTCCGAAACAGCTCCATCCAACTGCATAGCCAAGCTTATTGGGGGACCTCACCAGCTCTATGCTTCAAGGAAAGGCATGGCTTCCAGAGTCATCAAGGGAACCAACTCCAACTTCTTCACCCTTGCCAATGCTCTCACCTTCTCCACATGCAAACATAACACAAAGTGCTTATCCATCAAAAATTTTGTTGCTGATTCAAAGACCATTGATTTACCTCTGCCACCTGAGTGGGGCTTTCCACCTACAAGTTACTATTTTCCTGTGCTTCCCATCATAGGCATTCCTTGAAAGTGGTCGAGAGATTTGAATCTCGGAGCTCGTAAGAAAGTATAAGTGTTTTAGCATCGTGTTATATTCATGTTTAAGTAATATGATTAAGTGTTGTAGTTTAAATACGTTTGTAACCATGGAAAAGATGAATTATATATACTTGTTATTAATATATATGGTTGTCGGAATCTTCCCGAGATTTTCCACAAGTTGCCAA

mRNA sequence

GTTCTTACTTTTAGCACTAATCAATGGCTTCTCTTAAGCTCTTCATTATTGCTTTTCTCTTGTTCATAGTTCTTGCAAGAACTCAACTTGCACAATGCAACACTTTGAAGGCCAGCATCTCTTGCCTTGATTGTCAATCCAACTATGATTTCTCAGGAAACATGGTCGAAGTAAACTGCAAGAACGTAAAGAACCTAAGCATTGCAATTACCGAAGCGAATGGATCATTCAAAACTACGCTTCCTTCCAACGCAGCCTCCGATGACTCCGAAACAGCTCCATCCAACTGCATAGCCAAGCTTATTGGGGGACCTCACCAGCTCTATGCTTCAAGGAAAGGCATGGCTTCCAGAGTCATCAAGGGAACCAACTCCAACTTCTTCACCCTTGCCAATGCTCTCACCTTCTCCACATGCAAACATAACACAAAGTGCTTATCCATCAAAAATTTTGTTGCTGATTCAAAGACCATTGATTTACCTCTGCCACCTGAGTGGGGCTTTCCACCTACAAGTTACTATTTTCCTGTGCTTCCCATCATAGGCATTCCTTGAAAGTGGTCGAGAGATTTGAATCTCGGAGCTCGTAAGAAAGTATAAGTGTTTTAGCATCGTGTTATATTCATGTTTAAGTAATATGATTAAGTGTTGTAGTTTAAATACGTTTGTAACCATGGAAAAGATGAATTATATATACTTGTTATTAATATATATGGTTGTCGGAATCTTCCCGAGATTTTCCACAAGTTGCCAA

Coding sequence (CDS)

ATGGCTTCTCTTAAGCTCTTCATTATTGCTTTTCTCTTGTTCATAGTTCTTGCAAGAACTCAACTTGCACAATGCAACACTTTGAAGGCCAGCATCTCTTGCCTTGATTGTCAATCCAACTATGATTTCTCAGGAAACATGGTCGAAGTAAACTGCAAGAACGTAAAGAACCTAAGCATTGCAATTACCGAAGCGAATGGATCATTCAAAACTACGCTTCCTTCCAACGCAGCCTCCGATGACTCCGAAACAGCTCCATCCAACTGCATAGCCAAGCTTATTGGGGGACCTCACCAGCTCTATGCTTCAAGGAAAGGCATGGCTTCCAGAGTCATCAAGGGAACCAACTCCAACTTCTTCACCCTTGCCAATGCTCTCACCTTCTCCACATGCAAACATAACACAAAGTGCTTATCCATCAAAAATTTTGTTGCTGATTCAAAGACCATTGATTTACCTCTGCCACCTGAGTGGGGCTTTCCACCTACAAGTTACTATTTTCCTGTGCTTCCCATCATAGGCATTCCTTGA

Protein sequence

MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSIAITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFFTLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP

Homology

[Close]

BLAST of CmoCh18G006750 vs. ExPASy TrEMBL
Match: A0A6J1G179 (uncharacterized protein LOC111449745 OS=Cucurbita moschata OX=3662 GN=LOC111449745 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.8e-92
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI 60
           MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI
Sbjct: 1   MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI 60

Query: 61  AITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF 120
           AITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF
Sbjct: 61  AITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF 120

Query: 121 TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
           TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP
Sbjct: 121 TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 176

[Close]

BLAST of CmoCh18G006750 vs. ExPASy TrEMBL
Match: A0A6J1HU61 (uncharacterized protein LOC111466611 OS=Cucurbita maxima OX=3661 GN=LOC111466611 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 164/176 (93.18%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI 60
           MASLKLFIIAFLL ++LARTQLAQCNTLKA+ISCLDCQSNYDFSGNM+ VNCKNVKNLS+
Sbjct: 1   MASLKLFIIAFLLLMILARTQLAQCNTLKANISCLDCQSNYDFSGNMIVVNCKNVKNLSV 60

Query: 61  AITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF 120
           AITEANGSFKTTLPS+  SDDS+ APSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF
Sbjct: 61  AITEANGSFKTTLPSDTFSDDSKAAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF 120

Query: 121 TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
           TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP
Sbjct: 121 TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 176

[Close]

BLAST of CmoCh18G006750 vs. ExPASy TrEMBL
Match: A0A1S3CDU1 (uncharacterized protein LOC103499896 OS=Cucumis melo OX=3656 GN=LOC103499896 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.2e-59
Identity = 129/181 (71.27%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 1   MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI 60
           MASLKLFI    LF+VLA TQLAQCNTLKA ISCLDCQSNYDFSGN++ V C+ VKNL+I
Sbjct: 4   MASLKLFIFPIFLFMVLASTQLAQCNTLKAKISCLDCQSNYDFSGNLIMVKCERVKNLTI 63

Query: 61  AITEANGSFKTTLPSNAASDDSETA--PSNCIAKLIGGPHQLYASRKGMASRVIKGTNSN 120
           AIT+A+GSF+T LPS+ AS DSE A  P  CIAKL+GG HQL+ASRK + S +IK TNS 
Sbjct: 64  AITKADGSFETPLPSDMASVDSEAAPPPPKCIAKLVGGSHQLFASRKELVSTIIKETNSK 123

Query: 121 FFTLANALTFSTCKH-NTKCLSI-KNFVADSKTIDLP-LPPEWGFPPTSYYFPVLPIIGI 177
           FFT+A AL FSTCK  N KC +I K  + DSKT DLP LPPEWGFPPTSYY PVLPIIGI
Sbjct: 124 FFTIATALRFSTCKEINRKCKAIKKESIEDSKTFDLPNLPPEWGFPPTSYYLPVLPIIGI 183

[Close]

BLAST of CmoCh18G006750 vs. ExPASy TrEMBL
Match: A0A6J1CMJ0 (uncharacterized protein LOC111012639 OS=Momordica charantia OX=3673 GN=LOC111012639 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 9.4e-58
Identity = 121/178 (67.98%), Postives = 146/178 (82.02%), Query Frame = 0


Query: 1   MASLKLFI-IAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLS 60
           MASLKL + + FLL +VLA TQ AQC TL+A ISCLDC+SNYDFSGN + V C+ VKNL+
Sbjct: 1   MASLKLLLTLPFLLLMVLATTQAAQCYTLRAKISCLDCRSNYDFSGNKIVVKCEKVKNLA 60

Query: 61  IAITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNF 120
           +AIT  +GSF+TTLPS+A+  +S++ PSNCIAKL+GGPHQLYASRK MAS VIK TNS F
Sbjct: 61  VAITRTDGSFETTLPSDAS--NSQSPPSNCIAKLVGGPHQLYASRKDMASIVIKATNSKF 120

Query: 121 FTLANALTFSTCKHNTKCLSIKN-FVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
           FT+A AL FSTCK + KC ++K+ F+ADSKT+DLPLP EWG  P+SYY P LPIIGIP
Sbjct: 121 FTIATALKFSTCKQHNKCQAMKDQFIADSKTVDLPLPREWGLAPSSYYLPELPIIGIP 176

[Close]

BLAST of CmoCh18G006750 vs. ExPASy TrEMBL
Match: A0A0A0LYA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165730 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.7e-57
Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 0


Query: 1   MASLKLFIIAFLLFIVL-ARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLS 60
           MASLKLFI  F +FIVL A TQ AQCNTLKA ISCLDCQSNYDFSGN++ V C+  KNL+
Sbjct: 1   MASLKLFISPFFMFIVLIASTQRAQCNTLKAKISCLDCQSNYDFSGNLIMVKCERAKNLT 60

Query: 61  IAITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNF 120
           IAIT+A+GSF+T+LPSN AS+ + ++P  CIAKL+GG HQL+ASRK M S +IK TNS F
Sbjct: 61  IAITKADGSFETSLPSNMASEAAPSSP-KCIAKLLGGSHQLFASRKEMVSTIIKETNSKF 120

Query: 121 FTLANALTFSTCKH-NTKCLSI-KNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
           FT+A AL FSTCK  +  C +I K  V DSKT D PLPPEWGFPPTSYY PVLPIIGIP
Sbjct: 121 FTIATALKFSTCKEISRNCKAIKKESVEDSKTFDFPLPPEWGFPPTSYYIPVLPIIGIP 178

[Close]

BLAST of CmoCh18G006750 vs. TAIR 10
Match: AT5G22430.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 67/170 (39.41%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 10  AFLLF--IVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSIAITEANG 69
           AF LF   V +  +L+  + +   ISCLDC  ++DFSG  V + C   K    A+  A+G
Sbjct: 9   AFFLFALAVFSNLELSASSLVSGKISCLDCHRDFDFSGIKVLLKCDGEKKQITAVAAADG 68

Query: 70  SFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGT-NSNFFTLANAL 129
           SF++ LP+       +    NC+AKL+GGP QLYA +  + S ++K   +S   T +N L
Sbjct: 69  SFRSVLPT-----ADKKGSINCLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPL 128

Query: 130 TFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
            FS          I + + DSKTI+ P    +GFPP S +FP LPIIGIP
Sbjct: 129 AFSLSCPKPSRDDIGSMIGDSKTINFPGAGGFGFPPAS-FFPFLPIIGIP 172

[Close]

BLAST of CmoCh18G006750 vs. TAIR 10
Match: AT2G27385.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-22
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 0


Query: 1   MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI 60
           MA    F+  FL    L+   +   + ++  +SC DC ++YD+SG  V V+C +      
Sbjct: 12  MALRSHFLAVFLFSATLSSCLVVSASLVEGKVSCFDCPNDYDYSGITVGVSCSHTNTRFT 71

Query: 61  AITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF 120
             T+  G F + LPS           SNC A+L G   QLYAS+  + S+++K     + 
Sbjct: 72  VTTDKKGDFISELPSK--------IESNCEAELQGSVKQLYASKNNVKSKIVKLGGDKYG 131

Query: 121 TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
             +      +C  +    S       SKT+DLP+PPEWG  PTSYY P LPIIGIP
Sbjct: 132 LSSKLFFLKSCPRSFGSFS------SSKTVDLPVPPEWGLAPTSYYVPFLPIIGIP 173

[Close]

BLAST of CmoCh18G006750 vs. TAIR 10
Match: AT2G27385.2 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-22
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 0


Query: 1   MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI 60
           MA    F+  FL    L+   +   + ++  +SC DC ++YD+SG  V V+C +      
Sbjct: 1   MALRSHFLAVFLFSATLSSCLVVSASLVEGKVSCFDCPNDYDYSGITVGVSCSHTNTRFT 60

Query: 61  AITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF 120
             T+  G F + LPS           SNC A+L G   QLYAS+  + S+++K     + 
Sbjct: 61  VTTDKKGDFISELPSK--------IESNCEAELQGSVKQLYASKNNVKSKIVKLGGDKYG 120

Query: 121 TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
             +      +C  +    S       SKT+DLP+PPEWG  PTSYY P LPIIGIP
Sbjct: 121 LSSKLFFLKSCPRSFGSFS------SSKTVDLPVPPEWGLAPTSYYVPFLPIIGIP 162

[Close]

BLAST of CmoCh18G006750 vs. TAIR 10
Match: AT2G27385.3 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-22
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 0


Query: 1   MASLKLFIIAFLLFIVLARTQLAQCNTLKASISCLDCQSNYDFSGNMVEVNCKNVKNLSI 60
           MA    F+  FL    L+   +   + ++  +SC DC ++YD+SG  V V+C +      
Sbjct: 1   MALRSHFLAVFLFSATLSSCLVVSASLVEGKVSCFDCPNDYDYSGITVGVSCSHTNTRFT 60

Query: 61  AITEANGSFKTTLPSNAASDDSETAPSNCIAKLIGGPHQLYASRKGMASRVIKGTNSNFF 120
             T+  G F + LPS           SNC A+L G   QLYAS+  + S+++K     + 
Sbjct: 61  VTTDKKGDFISELPSK--------IESNCEAELQGSVKQLYASKNNVKSKIVKLGGDKYG 120

Query: 121 TLANALTFSTCKHNTKCLSIKNFVADSKTIDLPLPPEWGFPPTSYYFPVLPIIGIP 177
             +      +C  +    S       SKT+DLP+PPEWG  PTSYY P LPIIGIP
Sbjct: 121 LSSKLFFLKSCPRSFGSFS------SSKTVDLPVPPEWGLAPTSYYVPFLPIIGIP 162

The following BLAST results are available for this feature:

BLAST of CmoCh18G006750 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G006750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G179	5.8e-92	100.00	uncharacterized protein LOC111449745 OS=Cucurbita moschata OX=3662 GN=LOC1114497...	[more]
A0A6J1HU61	1.3e-86	93.18	uncharacterized protein LOC111466611 OS=Cucurbita maxima OX=3661 GN=LOC111466611...	[more]
A0A1S3CDU1	2.2e-59	71.27	uncharacterized protein LOC103499896 OS=Cucumis melo OX=3656 GN=LOC103499896 PE=...	[more]
A0A6J1CMJ0	9.4e-58	67.98	uncharacterized protein LOC111012639 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A0A0LYA1	4.7e-57	69.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165730 PE=4 SV=1	[more]

BLAST of CmoCh18G006750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22430.1	1.1e-23	39.41	Pollen Ole e 1 allergen and extensin family protein	[more]
AT2G27385.1	1.7e-22	35.23	Pollen Ole e 1 allergen and extensin family protein	[more]
AT2G27385.2	1.7e-22	35.23	Pollen Ole e 1 allergen and extensin family protein	[more]
AT2G27385.3	1.7e-22	35.23	Pollen Ole e 1 allergen and extensin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF01190	Pollen_Ole_e_1	coord: 32..97 e-value: 1.5E-4 score: 22.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G006750.1	CmoCh18G006750.1	mRNA