CmoCh18G005620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G005620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RPM1-interacting protein 4-like
Location	Cmo_Chr18: 4613008 .. 4613668 (+)
RNA-Seq Expression	CmoCh18G005620
Synteny	CmoCh18G005620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGAGTGTTTTTCTTTTTTTTTTTCATCTAAAATTAATTCATAGATTATTAGAAACTAATTTTTTTATTCATATGGTAGGGGGCAAAATCGTCATTTCACGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATAAACTCCGGATCGGAGAAATTGAGTAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGTCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

mRNA sequence

ATGGCAGGGGCAAAATCGTCATTTCACGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATAAACTCCGGATCGGAGAAATTGAGTAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGTCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Coding sequence (CDS)

ATGGCAGGGGCAAAATCGTCATTTCACGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATAAACTCCGGATCGGAGAAATTGAGTAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGTCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Protein sequence

MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGGEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHGGNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNTTSGFTSFASKVPT

Homology

[Close]

BLAST of CmoCh18G005620 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-12
Identity = 67/202 (33.17%), Postives = 95/202 (47.03%), Query Frame = 0


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGI-TFDPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  VAHD----GGEHQRRPRQQPNRERGAIINSGSE-------KLSSERSGSDYALLKKSKEN 128
              D      EH R   +   ++ G    S +E       + S   S  + + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGGNPAS---VPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS-N 183
           G  G SR  P       +P     VPKFG WD  +P S DGYT IFNK++ E+   A+ +
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS 184

[Close]

BLAST of CmoCh18G005620 vs. ExPASy Swiss-Prot
Match: Q8S3M3 (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-05
Identity = 21/59 (35.59%), Postives = 30/59 (50.85%), Query Frame = 0


Query: 9  HVPKFGNWDTDDVPYTICFENARELRAAGI-TFDPNDPDTYPPEVFKPVAHDGGEHQRR 67
          HVPKFGNWD +++ YT  FE     +  G   F+PNDP+  P   +        +H  +
Sbjct: 6  HVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQDHQHSEK 64

[Close]

BLAST of CmoCh18G005620 vs. ExPASy TrEMBL
Match: A0A6J1GSU2 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 6.6e-105
Identity = 190/191 (99.48%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180

Query: 181 TSGFTSFASKV 192
           TSGFTSFASK+
Sbjct: 181 TSGFTSFASKI 191

[Close]

BLAST of CmoCh18G005620 vs. ExPASy TrEMBL
Match: A0A6J1JVE9 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 181/195 (92.82%), Postives = 187/195 (95.90%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGA SS HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKP AH+G
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAI+NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNKTKQPIA
Sbjct: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 192
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 195

[Close]

BLAST of CmoCh18G005620 vs. ExPASy TrEMBL
Match: A0A6J1CND0 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.1e-62
Identity = 141/218 (64.68%), Postives = 153/218 (70.18%), Query Frame = 0


Query: 4   AKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGG-- 63
           AKSS HVPKFGNWDTDDVPYTICFENA ELRAAG+TFDPNDPDTYPPE F    H     
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  ------EHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLK------KSKENGVEGI 123
                 +H RRPR+QPNR+R    +SGSEKLSSERSGSDY+LLK      K   NGV+GI
Sbjct: 63  DRRRHHDHHRRPREQPNRDRR---SSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGI 122

Query: 124 SRLAPAVAGHGGNP--------------ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 183
           SR  P  AGHGGNP              ASVPKFGSWDARDPKSGDGYTAIFNK+K+EK+
Sbjct: 123 SRFPPTAAGHGGNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKK 182

Query: 184 IAASN-PQSVPPLMNKTK-QPIAHTNTTSGFTSFASKV 192
           I  SN  Q+VPPL N+TK QPI       G TSF SKV
Sbjct: 183 IGGSNSSQAVPPLTNQTKQQPI--PQIVHGSTSFVSKV 215

[Close]

BLAST of CmoCh18G005620 vs. ExPASy TrEMBL
Match: A0A5A7UH42 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001090 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.2e-60
Identity = 133/216 (61.57%), Postives = 148/216 (68.52%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAG KSS HVPKFGNWD+DDVPYTI FENAREL+AAG+TFDPNDPDTYPP VF       
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120
            +H R    + + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS- 180
           P      GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQI  S 
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 NPQSVPPLMNKTKQPIAHT----NTTSGFTSFASKV 192
           NPQ+VPPLMN+TKQP+  T     +T G TSF SKV
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKV 216

[Close]

BLAST of CmoCh18G005620 vs. ExPASy TrEMBL
Match: A0A1S3C9P5 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.9e-60
Identity = 132/216 (61.11%), Postives = 148/216 (68.52%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAG KSS HVPKFGNWD+DDVPYTI FENAREL+AAG+TFDPNDPDTYPP VF       
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120
            +H R    + + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS- 180
           P      GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQI  S 
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 NPQSVPPLMNKTKQPIAHT----NTTSGFTSFASKV 192
           NPQ+VPPLMN+TKQP+  T     +T G TSF SK+
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKI 216

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: KAG6573489.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012628.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 391.0 bits (1003), Expect = 6.1e-105
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGA SSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGA+INSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNKTKQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNT 180

Query: 181 TSGFTSFASKVPT 194
           TSGFTSFASKVPT
Sbjct: 181 TSGFTSFASKVPT 193

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: XP_022955116.1 (RPM1-interacting protein 4-like [Cucurbita moschata])

HSP 1 Score: 389.8 bits (1000), Expect = 1.4e-104
Identity = 190/191 (99.48%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180

Query: 181 TSGFTSFASKV 192
           TSGFTSFASK+
Sbjct: 181 TSGFTSFASKI 191

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: XP_023525812.1 (RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 381.7 bits (979), Expect = 3.7e-102
Identity = 185/191 (96.86%), Postives = 188/191 (98.43%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGA SSFHVPKFGNWDTDDVPYTICFENARELRAAGI FDPNDPDTYPPEVFKP AHDG
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGINFDPNDPDTYPPEVFKPAAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNK+KQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKSKQPIAHTNT 180

Query: 181 TSGFTSFASKV 192
           TSGFTSFASK+
Sbjct: 181 TSGFTSFASKI 191

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: XP_022994302.1 (RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 367.5 bits (942), Expect = 7.2e-98
Identity = 181/195 (92.82%), Postives = 187/195 (95.90%), Query Frame = 0


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGA SS HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKP AH+G
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAI+NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNKTKQPIA
Sbjct: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 192
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 195

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: XP_022142617.1 (RPM1-interacting protein 4-like [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 2.2e-62
Identity = 141/218 (64.68%), Postives = 153/218 (70.18%), Query Frame = 0


Query: 4   AKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGG-- 63
           AKSS HVPKFGNWDTDDVPYTICFENA ELRAAG+TFDPNDPDTYPPE F    H     
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  ------EHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLK------KSKENGVEGI 123
                 +H RRPR+QPNR+R    +SGSEKLSSERSGSDY+LLK      K   NGV+GI
Sbjct: 63  DRRRHHDHHRRPREQPNRDRR---SSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGI 122

Query: 124 SRLAPAVAGHGGNP--------------ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 183
           SR  P  AGHGGNP              ASVPKFGSWDARDPKSGDGYTAIFNK+K+EK+
Sbjct: 123 SRFPPTAAGHGGNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKK 182

Query: 184 IAASN-PQSVPPLMNKTK-QPIAHTNTTSGFTSFASKV 192
           I  SN  Q+VPPL N+TK QPI       G TSF SKV
Sbjct: 183 IGGSNSSQAVPPLTNQTKQQPI--PQIVHGSTSFVSKV 215

[Close]

BLAST of CmoCh18G005620 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 67/202 (33.17%), Postives = 95/202 (47.03%), Query Frame = 0


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGI-TFDPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  VAHD----GGEHQRRPRQQPNRERGAIINSGSE-------KLSSERSGSDYALLKKSKEN 128
              D      EH R   +   ++ G    S +E       + S   S  + + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGGNPAS---VPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS-N 183
           G  G SR  P       +P     VPKFG WD  +P S DGYT IFNK++ E+   A+ +
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS 184

[Close]

BLAST of CmoCh18G005620 vs. TAIR 10
Match: AT3G07195.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-05
Identity = 21/66 (31.82%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 9  HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGGEHQRRPR 68
          HVPKFG+W+  D P+T+ F+NAR  +   +      P+T P E+  P        Q+   
Sbjct: 6  HVPKFGDWNNQDQPFTVVFDNARTNKRQDLYESIEKPETKPQELAPPPPQPARRIQKPEA 65

Query: 69 QQPNRE 75
           +P ++
Sbjct: 66 PKPVKQ 71

[Close]

BLAST of CmoCh18G005620 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-05
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 126 VPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 156
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 8   LPKFGEWDVNDPSSAEGFTVIFNKARNEKK 37

[Close]

BLAST of CmoCh18G005620 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 126 VPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 156
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKK 37

[Close]

BLAST of CmoCh18G005620 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 126 VPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 156
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKK 53

The following BLAST results are available for this feature:

BLAST of CmoCh18G005620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	2.2e-12	33.17	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
Q8S3M3	7.5e-05	35.59	NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1	[more]

BLAST of CmoCh18G005620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSU2	6.6e-105	99.48	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE...	[more]
A0A6J1JVE9	3.5e-98	92.82	RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4...	[more]
A0A6J1CND0	1.1e-62	64.68	RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 P...	[more]
A0A5A7UH42	2.2e-60	61.57	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C9P5	2.9e-60	61.11	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=...	[more]

BLAST of CmoCh18G005620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573489.1	6.1e-105	98.45	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022955116.1	1.4e-104	99.48	RPM1-interacting protein 4-like [Cucurbita moschata]	[more]
XP_023525812.1	3.7e-102	96.86	RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994302.1	7.2e-98	92.82	RPM1-interacting protein 4-like [Cucurbita maxima]	[more]
XP_022142617.1	2.2e-62	64.68	RPM1-interacting protein 4-like [Momordica charantia]	[more]

BLAST of CmoCh18G005620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	1.5e-13	33.17	RPM1 interacting protein 4	[more]
AT3G07195.1	1.5e-05	31.82	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	7.7e-05	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	1.0e-04	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	1.0e-04	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 124..155 e-value: 7.7E-14 score: 50.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..93
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 66..181
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 7..77
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 7..77 coord: 66..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G005620.1	CmoCh18G005620.1	mRNA