CmoCh18G005320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G005320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	Cmo_Chr18: 3965073 .. 3965444 (+)
RNA-Seq Expression	CmoCh18G005320
Synteny	CmoCh18G005320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGATCTCAACGTGTTCAGCTACTACCTCGGCTTCGAAGTGCAACAGAGTACTGCCGGCATCACCATCTGCCAAAGTACGTATGCAAAGAAGCTGCTGGACACAACTGGACTTGCGGATCATAACCCTACAAGGACGCCAATCGAGGCCCGGCTCCAGCTAAGGAAGGTCGGCACTGCGACGGCAGTCGACGCCACCCATTACTGCAGCATTGTCGAGAGCCTGCGCTATCTGGTAAACACACGCCCTGACCTTACTTATTCCGTTGGATACGTGAGAAAATTCATGGAAGCACCTAGGGAGGAGCATCTTGTGGCTATCAAGCGCATCCTGCGCTATGTGGCTGGAACTAGAGGCTGGGGTGTGTGA

mRNA sequence

ATGAGCGATCTCAACGTGTTCAGCTACTACCTCGGCTTCGAAGTGCAACAGAGTACTGCCGGCATCACCATCTGCCAAAGTACGTATGCAAAGAAGCTGCTGGACACAACTGGACTTGCGGATCATAACCCTACAAGGACGCCAATCGAGGCCCGGCTCCAGCTAAGGAAGGTCGGCACTGCGACGGCAGTCGACGCCACCCATTACTGCAGCATTGTCGAGAGCCTGCGCTATCTGGTAAACACACGCCCTGACCTTACTTATTCCGTTGGATACGTGAGAAAATTCATGGAAGCACCTAGGGAGGAGCATCTTGTGGCTATCAAGCGCATCCTGCGCTATGTGGCTGGAACTAGAGGCTGGGGTGTGTGA

Coding sequence (CDS)

ATGAGCGATCTCAACGTGTTCAGCTACTACCTCGGCTTCGAAGTGCAACAGAGTACTGCCGGCATCACCATCTGCCAAAGTACGTATGCAAAGAAGCTGCTGGACACAACTGGACTTGCGGATCATAACCCTACAAGGACGCCAATCGAGGCCCGGCTCCAGCTAAGGAAGGTCGGCACTGCGACGGCAGTCGACGCCACCCATTACTGCAGCATTGTCGAGAGCCTGCGCTATCTGGTAAACACACGCCCTGACCTTACTTATTCCGTTGGATACGTGAGAAAATTCATGGAAGCACCTAGGGAGGAGCATCTTGTGGCTATCAAGCGCATCCTGCGCTATGTGGCTGGAACTAGAGGCTGGGGTGTGTGA

Protein sequence

MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGTATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRGWGV

Homology

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BLAST of CmoCh18G005320 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 1    MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
            + D     Y+LG E ++   G+ + Q  Y   LL  T +    P  TP+    +L     
Sbjct: 1177 VKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG 1236

Query: 61   ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
                D T Y  IV SL+YL  TRPD++Y+V  + +FM  P EEHL A+KRILRY+AGT  
Sbjct: 1237 TKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPN 1296

Query: 121  WGV 124
             G+
Sbjct: 1297 HGI 1299

[Close]

BLAST of CmoCh18G005320 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-15
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           M DL    Y+LG +++   +G+ + Q+ YA+++L+  G+ D  P  TP+  +L    V T
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVST 92

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGT 119
           A   D + + SIV +L+YL  TRPD++Y+V  V + M  P       +KR+LRYV GT
Sbjct: 93  AKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGT 149

[Close]

BLAST of CmoCh18G005320 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 9    YYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGTATAVDATH 68
            Y+LG E ++   G+ + Q  Y   LL  T +    P  TP+    +L         D T 
Sbjct: 1168 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1227

Query: 69   YCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRGWGV 124
            Y  IV SL+YL  TRPDL+Y+V  + ++M  P ++H  A+KR+LRY+AGT   G+
Sbjct: 1228 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGI 1282

[Close]

BLAST of CmoCh18G005320 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-12
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 1    MSDLNVFSYYLGFEV--QQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKV 60
            M DL      LG ++  ++++  + + Q  Y +++L+   + +  P  TP+   L+L K 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   GTATAVD------ATHYCSIVESLRY-LVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRI 120
               T V+         Y S V SL Y +V TRPD+ ++VG V +F+E P +EH  A+K I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

[Close]

BLAST of CmoCh18G005320 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAG-ITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVG 60
           M DL     +LG  + QS+ G IT+    Y  K    + +     T+TP+     L +  
Sbjct: 114 MKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETT 173

Query: 61  TATAVDATHYCSIVESLRYLVNT-RPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGT 120
           +    D T Y SIV  L +  NT RPD++Y V  + +F+  PR  HL + +R+LRY+  T
Sbjct: 174 SPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 233

[Close]

BLAST of CmoCh18G005320 vs. ExPASy TrEMBL
Match: A0A6J1GR47 (uncharacterized protein LOC111456719 OS=Cucurbita moschata OX=3662 GN=LOC111456719 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.8e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT
Sbjct: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
           ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG
Sbjct: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120

Query: 121 WGV 124
           WGV
Sbjct: 121 WGV 123

[Close]

BLAST of CmoCh18G005320 vs. ExPASy TrEMBL
Match: A0A6J1G533 (uncharacterized protein LOC111450836 OS=Cucurbita moschata OX=3662 GN=LOC111450836 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.2e-47
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSD  + SYYLG EVQQST GITICQS YAKKLLDT GLAD NPTRTP+EARLQLRKVGT
Sbjct: 87  MSDFGILSYYLGIEVQQSTVGITICQSAYAKKLLDTVGLADCNPTRTPMEARLQLRKVGT 146

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
            TAVD+ +Y ++V SLRYLVNT PDL +S+GYV +FMEAPREEHLVA+K ILRYVA TRG
Sbjct: 147 TTAVDSINYRNLVGSLRYLVNTCPDLAHSIGYVSRFMEAPREEHLVAVKHILRYVARTRG 206

Query: 121 WGV 124
           WGV
Sbjct: 207 WGV 209

[Close]

BLAST of CmoCh18G005320 vs. ExPASy TrEMBL
Match: A0A6J1GWC2 (uncharacterized protein LOC111458020 OS=Cucurbita moschata OX=3662 GN=LOC111458020 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.7e-45
Identity = 96/120 (80.00%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSDL V SYYLG EVQQST GITICQ  YAKKLL+TT L D+NPTRTP+EA LQLRKV T
Sbjct: 43  MSDLGVLSYYLGIEVQQSTIGITICQGAYAKKLLNTTRLVDNNPTRTPMEAWLQLRKVST 102

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
              VDAT+YCSIVESL Y VNTRPDL YSVGYV +FMEAPREEHLV IK ILRYVAGTRG
Sbjct: 103 MLTVDATNYCSIVESLHYRVNTRPDLAYSVGYVSRFMEAPREEHLVTIKCILRYVAGTRG 162

[Close]

BLAST of CmoCh18G005320 vs. ExPASy TrEMBL
Match: A0B9X7 (OSIGBa0135C09.3 protein OS=Oryza sativa OX=4530 GN=OSIGBa0135C09.3 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.6e-35
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1    MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
            MSDL    YYLG EV Q + GIT+ Q+ YA K+L+  GL D NP +TP+E RL+LRK   
Sbjct: 1071 MSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSD 1130

Query: 61   ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
               VDAT Y S+V SLRYLVNTRPDL +SVGYV +FME+PRE+HL A++RILRYVAGTR 
Sbjct: 1131 FPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRC 1190

Query: 121  WGV 124
            WG+
Sbjct: 1191 WGI 1193

[Close]

BLAST of CmoCh18G005320 vs. ExPASy TrEMBL
Match: C7J163 (Os04g0196500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0196500 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.6e-35
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSDL    YYLG EV Q + GIT+ Q+ YA K+L+  GL D NP +TP+E RL+LRK   
Sbjct: 610 MSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSD 669

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
              VDAT Y S+V SLRYLVNTRPDL +SVGYV +FME+PRE+HL A++RILRYVAGTR 
Sbjct: 670 FPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRC 729

Query: 121 WGV 124
           WG+
Sbjct: 730 WGI 732

[Close]

BLAST of CmoCh18G005320 vs. NCBI nr
Match: XP_022954453.1 (uncharacterized protein LOC111456719 [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT
Sbjct: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
           ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG
Sbjct: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120

Query: 121 WGV 124
           WGV
Sbjct: 121 WGV 123

[Close]

BLAST of CmoCh18G005320 vs. NCBI nr
Match: XP_022946898.1 (uncharacterized protein LOC111450836 [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSD  + SYYLG EVQQST GITICQS YAKKLLDT GLAD NPTRTP+EARLQLRKVGT
Sbjct: 87  MSDFGILSYYLGIEVQQSTVGITICQSAYAKKLLDTVGLADCNPTRTPMEARLQLRKVGT 146

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
            TAVD+ +Y ++V SLRYLVNT PDL +S+GYV +FMEAPREEHLVA+K ILRYVA TRG
Sbjct: 147 TTAVDSINYRNLVGSLRYLVNTCPDLAHSIGYVSRFMEAPREEHLVAVKHILRYVARTRG 206

Query: 121 WGV 124
           WGV
Sbjct: 207 WGV 209

[Close]

BLAST of CmoCh18G005320 vs. NCBI nr
Match: XP_022956268.1 (uncharacterized protein LOC111458020 [Cucurbita moschata])

HSP 1 Score: 190.7 bits (483), Expect = 7.7e-45
Identity = 96/120 (80.00%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSDL V SYYLG EVQQST GITICQ  YAKKLL+TT L D+NPTRTP+EA LQLRKV T
Sbjct: 43  MSDLGVLSYYLGIEVQQSTIGITICQGAYAKKLLNTTRLVDNNPTRTPMEAWLQLRKVST 102

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
              VDAT+YCSIVESL Y VNTRPDL YSVGYV +FMEAPREEHLV IK ILRYVAGTRG
Sbjct: 103 MLTVDATNYCSIVESLHYRVNTRPDLAYSVGYVSRFMEAPREEHLVTIKCILRYVAGTRG 162

[Close]

BLAST of CmoCh18G005320 vs. NCBI nr
Match: XP_023521510.1 (uncharacterized protein LOC111785335 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 91/117 (77.78%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           MSDL + +YYLG +VQQST GITICQ+ YAKKLLDTTGLAD NPTR P+EARLQLRK  T
Sbjct: 530 MSDLGILNYYLGIKVQQSTTGITICQNAYAKKLLDTTGLADSNPTRMPMEARLQLRKAST 589

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAG 118
            T VDAT+Y +IV SL YLVNTRPDLTYSVGYV +FMEAPR+EHLVA K ILRYVAG
Sbjct: 590 TTTVDATNYHNIVGSLHYLVNTRPDLTYSVGYVSRFMEAPRKEHLVAAKCILRYVAG 646

[Close]

BLAST of CmoCh18G005320 vs. NCBI nr
Match: CAH66352.1 (OSIGBa0135C09.3 [Oryza sativa])

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-35
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1    MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
            MSDL    YYLG EV Q + GIT+ Q+ YA K+L+  GL D NP +TP+E RL+LRK   
Sbjct: 1071 MSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSD 1130

Query: 61   ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
               VDAT Y S+V SLRYLVNTRPDL +SVGYV +FME+PRE+HL A++RILRYVAGTR 
Sbjct: 1131 FPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRC 1190

Query: 121  WGV 124
            WG+
Sbjct: 1191 WGI 1193

[Close]

BLAST of CmoCh18G005320 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-19
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           + DL    Y+LG E+ +S AGI ICQ  YA  LLD TGL    P+  P++  +       
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRG 120
              VDA  Y  ++  L YL  TR D++++V  + +F EAPR  H  A+ +IL Y+ GT G
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVG 429

Query: 121 WGV 124
            G+
Sbjct: 430 QGL 432

[Close]

BLAST of CmoCh18G005320 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 7.3e-17
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 1   MSDLNVFSYYLGFEVQQSTAGITICQSTYAKKLLDTTGLADHNPTRTPIEARLQLRKVGT 60
           M DL    Y+LG +++   +G+ + Q+ YA+++L+  G+ D  P  TP+  +L    V T
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVST 92

Query: 61  ATAVDATHYCSIVESLRYLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGT 119
           A   D + + SIV +L+YL  TRPD++Y+V  V + M  P       +KR+LRYV GT
Sbjct: 93  AKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGT 149

[Close]

BLAST of CmoCh18G005320 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 78  YLVNTRPDLTYSVGYVRKFMEAPREEHLVAIKRILRYVAGTRGWGV 124
           YL  TRPDLT++V  + +F  A R   + A+ ++L YV GT G G+
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL 47

The following BLAST results are available for this feature:

BLAST of CmoCh18G005320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.1e-17	39.02	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	1.0e-15	37.29	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	2.3e-15	37.39	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	4.0e-12	34.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	6.4e-10	33.88	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of CmoCh18G005320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GR47	6.8e-63	100.00	uncharacterized protein LOC111456719 OS=Cucurbita moschata OX=3662 GN=LOC1114567...	[more]
A0A6J1G533	5.2e-47	78.05	uncharacterized protein LOC111450836 OS=Cucurbita moschata OX=3662 GN=LOC1114508...	[more]
A0A6J1GWC2	3.7e-45	80.00	uncharacterized protein LOC111458020 OS=Cucurbita moschata OX=3662 GN=LOC1114580...	[more]
A0B9X7	4.6e-35	62.60	OSIGBa0135C09.3 protein OS=Oryza sativa OX=4530 GN=OSIGBa0135C09.3 PE=4 SV=1	[more]
C7J163	4.6e-35	62.60	Os04g0196500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0196500 PE...	[more]

BLAST of CmoCh18G005320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954453.1	1.4e-62	100.00	uncharacterized protein LOC111456719 [Cucurbita moschata]	[more]
XP_022946898.1	1.1e-46	78.05	uncharacterized protein LOC111450836 [Cucurbita moschata]	[more]
XP_022956268.1	7.7e-45	80.00	uncharacterized protein LOC111458020 [Cucurbita moschata]	[more]
XP_023521510.1	1.2e-42	77.78	uncharacterized protein LOC111785335 [Cucurbita pepo subsp. pepo]	[more]
CAH66352.1	9.5e-35	62.60	OSIGBa0135C09.3 [Oryza sativa]	[more]

BLAST of CmoCh18G005320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.5e-19	39.02	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.3e-17	37.29	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.1e-04	43.48	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..49 e-value: 1.8E-8 score: 34.3
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 44..119
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 44..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G005320.1	CmoCh18G005320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding