CmoCh18G005260 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G005260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	heavy metal-associated isoprenylated plant protein 39-like
Location	Cmo_Chr18: 3848486 .. 3848785 (+)
RNA-Seq Expression	CmoCh18G005260
Synteny	CmoCh18G005260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCGACCCAAAAGAGAACAAGATTACCGTGATTGGAACAGCTGACCCGGTTGAGATCGTTGGAAAAGTAAGAAAGGTTTGGCCCTCCGCTTACATTATTAGCGTAGGGCCAGAGAAAGAAGAACCGAAGAAAGTAGAGCCGAAGAAAGAAGAGCCGAAGAAACAAGAGCCTCAACCCAAAGTCGAGCAGATTGATTGGGCTAAGGCTTACCCAACCATTCATTCGTACCCCATAACTCATTACTATCATCCATATCGAGAAGAAGACAACCTAAATGCCTGTGTTATCTTCTAA

mRNA sequence

ATGGCAGCCGACCCAAAAGAGAACAAGATTACCGTGATTGGAACAGCTGACCCGGTTGAGATCGTTGGAAAAGTAAGAAAGGTTTGGCCCTCCGCTTACATTATTAGCGTAGGGCCAGAGAAAGAAGAACCGAAGAAAGTAGAGCCGAAGAAAGAAGAGCCGAAGAAACAAGAGCCTCAACCCAAAGTCGAGCAGATTGATTGGGCTAAGGCTTACCCAACCATTCATTCGTACCCCATAACTCATTACTATCATCCATATCGAGAAGAAGACAACCTAAATGCCTGTGTTATCTTCTAA

Coding sequence (CDS)

ATGGCAGCCGACCCAAAAGAGAACAAGATTACCGTGATTGGAACAGCTGACCCGGTTGAGATCGTTGGAAAAGTAAGAAAGGTTTGGCCCTCCGCTTACATTATTAGCGTAGGGCCAGAGAAAGAAGAACCGAAGAAAGTAGAGCCGAAGAAAGAAGAGCCGAAGAAACAAGAGCCTCAACCCAAAGTCGAGCAGATTGATTGGGCTAAGGCTTACCCAACCATTCATTCGTACCCCATAACTCATTACTATCATCCATATCGAGAAGAAGACAACCTAAATGCCTGTGTTATCTTCTAA

Protein sequence

MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQPKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVIF

Homology

[Close]

BLAST of CmoCh18G005260 vs. ExPASy Swiss-Prot
Match: O03982 (Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX=3702 GN=HIPP39 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.7e-10
Identity = 53/146 (36.30%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGP-------EKEEPKK------- 60
           +A D KE K+TVIGT DPV +V K+RK WP   I+ VGP       +KEEPKK       
Sbjct: 32  IAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEEPKKEGGGEPP 91

Query: 61  ---------------VEPKKEEPKKQ---------------EPQPKV----EQIDWAKAY 99
                            PKKEE KK+               +PQP V      ++  KAY
Sbjct: 92  KKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAY 151

[Close]

BLAST of CmoCh18G005260 vs. ExPASy TrEMBL
Match: A0A6J1E2W0 (heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111430295 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
           MA D KENKITVIGTADP+EIV KVRK+WPSAYIISVGPEKEEPKKVEPKK++P    P 
Sbjct: 32  MATDAKENKITVIGTADPIEIVKKVRKIWPSAYIISVGPEKEEPKKVEPKKQDP----PT 91

Query: 61  PKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVI 99
           PK+E IDWAKAY  + SYP  HYY+  +E+ N NACVI
Sbjct: 92  PKIEPIDWAKAYTALQSYPTPHYYYSCQEQYNPNACVI 125

[Close]

BLAST of CmoCh18G005260 vs. ExPASy TrEMBL
Match: A0A6J1IAF4 (heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111471568 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.7e-28
Identity = 69/98 (70.41%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
           MA D KENKITVIGT DP+EIV KVRK+WPSAYIISVGPEKEEPKKVEPKK+ P    P 
Sbjct: 32  MATDTKENKITVIGTTDPIEIVKKVRKIWPSAYIISVGPEKEEPKKVEPKKQVP----PT 91

Query: 61  PKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVI 99
           PK+EQIDWAKA   + S P  HYY+   E+ N NACVI
Sbjct: 92  PKIEQIDWAKACIALQSCPTPHYYYSCEEQYNPNACVI 125

[Close]

BLAST of CmoCh18G005260 vs. ExPASy TrEMBL
Match: A0A5A7TMU0 (Heavy metal-associated isoprenylated plant protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002240 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.4e-20
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 6  KENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQPKVEQ 65
          +ENKITVIGT DP++IV KVRKVWP+A IISVG E          KE+ KK+E QPK+EQ
Sbjct: 26 EENKITVIGTTDPIKIVKKVRKVWPTANIISVGQE----------KEDAKKEESQPKIEQ 85

Query: 66 IDWAKAYPTIHSYPITHYYHPYRE 90
          IDWAKAY T +SYP +HYY+PY+E
Sbjct: 86 IDWAKAYTTFYSYPTSHYYYPYQE 99

[Close]

BLAST of CmoCh18G005260 vs. ExPASy TrEMBL
Match: A0A1S3AUB4 (uncharacterized protein LOC103482783 OS=Cucumis melo OX=3656 GN=LOC103482783 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.4e-20
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 6   KENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQPKVEQ 65
           +ENKITVIGT DP++IV KVRKVWP+A IISVG E          KE+ KK+E QPK+EQ
Sbjct: 35  EENKITVIGTTDPIKIVKKVRKVWPTANIISVGQE----------KEDAKKEESQPKIEQ 94

Query: 66  IDWAKAYPTIHSYPITHYYHPYRE 90
           IDWAKAY T +SYP +HYY+PY+E
Sbjct: 95  IDWAKAYTTFYSYPTSHYYYPYQE 108

[Close]

BLAST of CmoCh18G005260 vs. ExPASy TrEMBL
Match: A0A0A0KNU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152270 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.7e-20
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
          MAA+  ENKITVIGT DP++IV KVRKVWP A IISVG E          KE+ KK+E Q
Sbjct: 23 MAAE--ENKITVIGTTDPIKIVKKVRKVWPCANIISVGQE----------KEDAKKEESQ 82

Query: 61 PKVEQIDWAKAYPTIHSYPITHYYHPYRE 90
          PK+EQIDW KAY T +SYP THYY+PY+E
Sbjct: 83 PKIEQIDWDKAYTTFYSYPTTHYYYPYQE 99

[Close]

BLAST of CmoCh18G005260 vs. NCBI nr
Match: KAG6573451.1 (hypothetical protein SDJN03_27338, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.4 bits (490), Expect = 9.6e-46
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
           MAADPKENKITVIGTADP+EIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEE KKQEPQ
Sbjct: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60

Query: 61  PKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVIF 100
           PKVEQIDWAKAYP+ HSYPITHYYHPYREEDN NACVIF
Sbjct: 61  PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVIF 99

[Close]

BLAST of CmoCh18G005260 vs. NCBI nr
Match: KAG7012598.1 (hypothetical protein SDJN02_25350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
           MAADPKE KITVIGTADP+EIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEE KKQEPQ
Sbjct: 1   MAADPKEKKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60

Query: 61  PKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVIF 100
           PKVEQIDWAKAYPT HSYPITHYYHPYREEDN NACVIF
Sbjct: 61  PKVEQIDWAKAYPTFHSYPITHYYHPYREEDNPNACVIF 99

[Close]

BLAST of CmoCh18G005260 vs. NCBI nr
Match: XP_023542144.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
           MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGP+KEEPKKV     EPKKQEPQ
Sbjct: 40  MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPKKEEPKKV-----EPKKQEPQ 99

Query: 61  PKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVIF 100
           PKVEQIDWAKAYPT HSYPITHYYH YREEDN NACVIF
Sbjct: 100 PKVEQIDWAKAYPTFHSYPITHYYHLYREEDNPNACVIF 133

[Close]

BLAST of CmoCh18G005260 vs. NCBI nr
Match: XP_022922259.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
           MA D KENKITVIGTADP+EIV KVRK+WPSAYIISVGPEKEEPKKVEPKK++P    P 
Sbjct: 32  MATDAKENKITVIGTADPIEIVKKVRKIWPSAYIISVGPEKEEPKKVEPKKQDP----PT 91

Query: 61  PKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVI 99
           PK+E IDWAKAY  + SYP  HYY+  +E+ N NACVI
Sbjct: 92  PKIEPIDWAKAYTALQSYPTPHYYYSCQEQYNPNACVI 125

[Close]

BLAST of CmoCh18G005260 vs. NCBI nr
Match: KAG6579362.1 (Heavy metal-associated isoprenylated plant protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
           MA D KENKITVIGTADP+EIV KVRK+WPSAYIISVGPEKEEPKKVEPKK++P    P 
Sbjct: 62  MATDTKENKITVIGTADPIEIVKKVRKIWPSAYIISVGPEKEEPKKVEPKKQDP----PT 121

Query: 61  PKVEQIDWAKAYPTIHSYPITHYYHPYREEDNLNACVI 99
           PK+E IDWAKAY  + SYP  HYY+  +E+ N NACVI
Sbjct: 122 PKIEPIDWAKAYTALQSYPTPHYYYSCQEQYNPNACVI 155

[Close]

BLAST of CmoCh18G005260 vs. TAIR 10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-11
Identity = 53/146 (36.30%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGP-------EKEEPKK------- 60
           +A D KE K+TVIGT DPV +V K+RK WP   I+ VGP       +KEEPKK       
Sbjct: 32  IAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEEPKKEGGGEPP 91

Query: 61  ---------------VEPKKEEPKKQ---------------EPQPKV----EQIDWAKAY 99
                            PKKEE KK+               +PQP V      ++  KAY
Sbjct: 92  KKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAY 151

[Close]

BLAST of CmoCh18G005260 vs. TAIR 10
Match: AT1G01490.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-11
Identity = 53/146 (36.30%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGP-------EKEEPKK------- 60
           +A D KE K+TVIGT DPV +V K+RK WP   I+ VGP       +KEEPKK       
Sbjct: 32  IAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEEPKKEGGGEPP 91

Query: 61  ---------------VEPKKEEPKKQ---------------EPQPKV----EQIDWAKAY 99
                            PKKEE KK+               +PQP V      ++  KAY
Sbjct: 92  KKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAY 151

[Close]

BLAST of CmoCh18G005260 vs. TAIR 10
Match: AT5G23760.1 (Copper transport protein family )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 1  MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEEPKKQEPQ 60
          +AAD K+ K+TVIG  D V +V K++KV     +ISVGP KEE K  E KKEE K+++ +
Sbjct: 34 IAADMKDQKLTVIGLMDAVAVVKKLKKV-GKVDLISVGPAKEEKK--EEKKEEKKEEKKE 93

Query: 61 PKVEQ 66
           K E+
Sbjct: 94 EKKEE 95

The following BLAST results are available for this feature:

BLAST of CmoCh18G005260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O03982	6.7e-10	36.30	Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmoCh18G005260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2W0	1.2e-30	72.45	heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata...	[more]
A0A6J1IAF4	5.7e-28	70.41	heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita maxima O...	[more]
A0A5A7TMU0	4.4e-20	64.29	Heavy metal-associated isoprenylated plant protein 3-like OS=Cucumis melo var. m...	[more]
A0A1S3AUB4	4.4e-20	64.29	uncharacterized protein LOC103482783 OS=Cucumis melo OX=3656 GN=LOC103482783 PE=...	[more]
A0A0A0KNU5	9.7e-20	64.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152270 PE=4 SV=1	[more]

BLAST of CmoCh18G005260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573451.1	9.6e-46	94.95	hypothetical protein SDJN03_27338, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012598.1	1.6e-45	94.95	hypothetical protein SDJN02_25350, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023542144.1	2.4e-41	90.91	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp...	[more]
XP_022922259.1	2.5e-30	72.45	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata]	[more]
KAG6579362.1	2.5e-30	72.45	Heavy metal-associated isoprenylated plant protein 39, partial [Cucurbita argyro...	[more]

BLAST of CmoCh18G005260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01490.1	4.8e-11	36.30	Heavy metal transport/detoxification superfamily protein	[more]
AT1G01490.2	4.8e-11	36.30	Heavy metal transport/detoxification superfamily protein	[more]
AT5G23760.1	2.3e-05	49.23	Copper transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 1..43 e-value: 1.4E-7 score: 33.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	PANTHER	PTHR45811:SF49	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 2..98
None	No IPR available	PANTHER	PTHR45811	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G005260.1	CmoCh18G005260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding