CmoCh18G003930 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cmo_Chr18: 2560659 .. 2561240 (+)
RNA-Seq Expression	CmoCh18G003930
Synteny	CmoCh18G003930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCCAACCACGAAAAGATTCCACGGAGGCCGGATCATCGTCGGCCACGGCGGTCCTCGACACCCAGCACCACCAAGGCGCGGCGGCGCTCAGCCGCTACGAGTCCCAGAAGCGGCGAGACTGGAACACGTTCGGACAGTATCTTAAAAATCAAGCGCCGCCGGTTCCACTGTTCGAGTGCAACTGCAACCACGTGCTCGAATTCCTCCGCTACCTCGACCAGTTCGGAAAAACTAAGGTTCACTTACATGGGTGCGTGTTTTTCGGTCAGCCTGACCCACCTGCCCCTTGCACGTGTCCACTCCGCCAAGCGTGGGGCAGCCTTGATGCTCTCATCGGCCGGCTTCGGGCGGCGTATGAGGAGCACGGCGGTTCGCCGGAATCAAACCCTTTTGGAAATGGAGCAATTCGTGTGTATTTGAGGGAAGTTAAGGAGTGTCAAGCTAAAGCTAGAGGGATTCCGTACAAGAAAAAGAAGAGGAAAAGAGCTCAATTCAAGGCTAATGACGACGGCGCTGGCGGCGGCGGCGGCGGGAACAACAATAACAACAACCAACCCATGAAGCATCTTGCTTGA

mRNA sequence

ATGTCAACCCAACCACGAAAAGATTCCACGGAGGCCGGATCATCGTCGGCCACGGCGGTCCTCGACACCCAGCACCACCAAGGCGCGGCGGCGCTCAGCCGCTACGAGTCCCAGAAGCGGCGAGACTGGAACACGTTCGGACAGTATCTTAAAAATCAAGCGCCGCCGGTTCCACTGTTCGAGTGCAACTGCAACCACGTGCTCGAATTCCTCCGCTACCTCGACCAGTTCGGAAAAACTAAGGTTCACTTACATGGGTGCGTGTTTTTCGGTCAGCCTGACCCACCTGCCCCTTGCACGTGTCCACTCCGCCAAGCGTGGGGCAGCCTTGATGCTCTCATCGGCCGGCTTCGGGCGGCGTATGAGGAGCACGGCGGTTCGCCGGAATCAAACCCTTTTGGAAATGGAGCAATTCGTGTGTATTTGAGGGAAGTTAAGGAGTGTCAAGCTAAAGCTAGAGGGATTCCGTACAAGAAAAAGAAGAGGAAAAGAGCTCAATTCAAGGCTAATGACGACGGCGCTGGCGGCGGCGGCGGCGGGAACAACAATAACAACAACCAACCCATGAAGCATCTTGCTTGA

Coding sequence (CDS)

ATGTCAACCCAACCACGAAAAGATTCCACGGAGGCCGGATCATCGTCGGCCACGGCGGTCCTCGACACCCAGCACCACCAAGGCGCGGCGGCGCTCAGCCGCTACGAGTCCCAGAAGCGGCGAGACTGGAACACGTTCGGACAGTATCTTAAAAATCAAGCGCCGCCGGTTCCACTGTTCGAGTGCAACTGCAACCACGTGCTCGAATTCCTCCGCTACCTCGACCAGTTCGGAAAAACTAAGGTTCACTTACATGGGTGCGTGTTTTTCGGTCAGCCTGACCCACCTGCCCCTTGCACGTGTCCACTCCGCCAAGCGTGGGGCAGCCTTGATGCTCTCATCGGCCGGCTTCGGGCGGCGTATGAGGAGCACGGCGGTTCGCCGGAATCAAACCCTTTTGGAAATGGAGCAATTCGTGTGTATTTGAGGGAAGTTAAGGAGTGTCAAGCTAAAGCTAGAGGGATTCCGTACAAGAAAAAGAAGAGGAAAAGAGCTCAATTCAAGGCTAATGACGACGGCGCTGGCGGCGGCGGCGGCGGGAACAACAATAACAACAACCAACCCATGAAGCATCTTGCTTGA

Protein sequence

MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGGNNNNNNQPMKHLA

Homology

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BLAST of CmoCh18G003930 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-67
Identity = 113/132 (85.61%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 33  SRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQ 92
           SRYESQKRRDWNTFGQYLKNQ PPVP+  C+CNHVL+FLRYLDQFGKTKVH+ GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 93  PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKECQAKA 152
           P+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PE+NPF +GAIRVYLREV+ECQAKA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 153 RGIPYKKKKRKR 165
           RGIPYKKKK+K+
Sbjct: 144 RGIPYKKKKKKK 155

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BLAST of CmoCh18G003930 vs. ExPASy Swiss-Prot
Match: B8AIK3 (Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 28  GAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGC 87
           G A  SRYESQKRRDW TFGQYL+N  PP+ L  C+  HVLEFLRYLDQFGKTKVH HGC
Sbjct: 17  GTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGC 76

Query: 88  VFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKE 147
            FFG P PPAPC CPLRQAWGSLDAL+GRLRAA+EEHGG PESNPFG  A+R+YLR++++
Sbjct: 77  PFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRD 136

Query: 148 CQAKARGIPYKKKKRKRA 166
            Q+KARGI Y+KK+RKRA
Sbjct: 137 TQSKARGIAYEKKRRKRA 154

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BLAST of CmoCh18G003930 vs. ExPASy Swiss-Prot
Match: Q0E3M2 (Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 28  GAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGC 87
           G A  SRYESQKRRDW TFGQYL+N  PP+ L  C+  HVLEFLRYLDQFGKTKVH HGC
Sbjct: 17  GTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGC 76

Query: 88  VFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKE 147
            FFG P PPAPC CPLRQAWGSLDAL+GRLRAA+EEHGG PESNPFG  A+R+YLR++++
Sbjct: 77  PFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRD 136

Query: 148 CQAKARGIPYKKKKRKRA 166
            Q+KARGI Y+KK+RKRA
Sbjct: 137 TQSKARGIAYEKKRRKRA 154

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BLAST of CmoCh18G003930 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.1e-59
Identity = 112/163 (68.71%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 5   PRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNC 64
           P KD  +  SSS+         Q    LSRYESQKRRDWNTF QYLK+Q PP+ + + + 
Sbjct: 8   PTKDPPDHPSSSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDY 67

Query: 65  NHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH 124
            HVL FLRYLDQFGKTKVH   CVFFGQPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH
Sbjct: 68  THVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEH 127

Query: 125 -GGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ 167
            GGSP++NPF NG+IRV+LREV+E QAKARGIPY+KKKR++ +
Sbjct: 128 GGGSPDTNPFANGSIRVHLREVRESQAKARGIPYRKKKRRKTK 170

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BLAST of CmoCh18G003930 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 109/156 (69.87%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 9   STEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVL 68
           +T + SSS++         G   LSRYE+QKRRDWNTFGQYL+N  PP+ L  C+  HVL
Sbjct: 29  TTSSSSSSSSG------GSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 88

Query: 69  EFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSP 128
           EFLRYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSP
Sbjct: 89  EFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSP 148

Query: 129 ESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 165
           E+NPFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 149 ETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

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BLAST of CmoCh18G003930 vs. ExPASy TrEMBL
Match: A0A6J1GSW5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111457135 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 7.5e-109
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180

Query: 181 NNNNNNQPMKHLA 194
           NNNNNNQPMKHLA
Sbjct: 181 NNNNNNQPMKHLA 193

[Close]

BLAST of CmoCh18G003930 vs. ExPASy TrEMBL
Match: A0A6J1JYM4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111490052 PE=3 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 2.8e-103
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSS  AV+DTQ+HQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSTAAVIDTQNHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ KANDDG GGGG G
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQLKANDDGGGGGGCG 180

Query: 181 NNNNNNQPMKHLA 194
            +NNNNQPMKHLA
Sbjct: 181 GSNNNNQPMKHLA 193

[Close]

BLAST of CmoCh18G003930 vs. ExPASy TrEMBL
Match: A0A1S4E614 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503180 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.0e-85
Identity = 160/192 (83.33%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MST+ RKD TEAGSSS T    T      AALSRYESQKRRDWNTFGQYLKNQ PPV L 
Sbjct: 1   MSTEARKDPTEAGSSSRTTTTTT------AALSRYESQKRRDWNTFGQYLKNQTPPVSLS 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD        
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDI-----N 180

Query: 181 NNNNNNQPMKHL 193
           NNNNN QP+KHL
Sbjct: 181 NNNNNKQPIKHL 181

[Close]

BLAST of CmoCh18G003930 vs. ExPASy TrEMBL
Match: A0A5A7UU18 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002260 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.6e-85
Identity = 160/192 (83.33%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MST+ RKD TEAGSSS T    T      AALSRYESQKRRDWNTFGQYLKNQ PPV L 
Sbjct: 1   MSTEARKDPTEAGSSSRTTTTTT------AALSRYESQKRRDWNTFGQYLKNQTPPVSLS 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD        
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDI----NN 180

Query: 181 NNNNNNQPMKHL 193
           NNNNN QP+KHL
Sbjct: 181 NNNNNKQPIKHL 182

[Close]

BLAST of CmoCh18G003930 vs. ExPASy TrEMBL
Match: A0A0A0M097 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.1e-82
Identity = 154/192 (80.21%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MST+ RKD TEAGSSS             AALSRYESQKRRDWNTFGQYLKNQ P V L 
Sbjct: 1   MSTEGRKDPTEAGSSSRATTT-------TAALSRYESQKRRDWNTFGQYLKNQTPAVSLS 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD        
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNN 180

Query: 181 NNNNNNQPMKHL 193
            N+N+ QP+KHL
Sbjct: 181 TNSNSKQPIKHL 185

[Close]

BLAST of CmoCh18G003930 vs. NCBI nr
Match: XP_022955058.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180

Query: 181 NNNNNNQPMKHLA 194
           NNNNNNQPMKHLA
Sbjct: 181 NNNNNNQPMKHLA 193

[Close]

BLAST of CmoCh18G003930 vs. NCBI nr
Match: XP_023541966.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 1.9e-106
Identity = 192/196 (97.96%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSS TAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSTTAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGG--- 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGG   
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGC 180

Query: 181 GGGNNNNNNQPMKHLA 194
           GGGNNNNNNQPMKHLA
Sbjct: 181 GGGNNNNNNQPMKHLA 196

[Close]

BLAST of CmoCh18G003930 vs. NCBI nr
Match: KAG6573307.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012476.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.7 bits (1010), Expect = 9.4e-106
Identity = 190/195 (97.44%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSSATAV++TQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGG--G 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDG GGG  G
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180

Query: 181 GGNNNNNNQPMKHLA 194
           GGNNNNNNQPMKHLA
Sbjct: 181 GGNNNNNNQPMKHLA 195

[Close]

BLAST of CmoCh18G003930 vs. NCBI nr
Match: XP_022994266.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 5.7e-103
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSS  AV+DTQ+HQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSTAAVIDTQNHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ KANDDG GGGG G
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQLKANDDGGGGGGCG 180

Query: 181 NNNNNNQPMKHLA 194
            +NNNNQPMKHLA
Sbjct: 181 GSNNNNQPMKHLA 193

[Close]

BLAST of CmoCh18G003930 vs. NCBI nr
Match: XP_008465553.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016903415.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 325.1 bits (832), Expect = 4.1e-85
Identity = 160/192 (83.33%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MST+ RKD TEAGSSS T    T      AALSRYESQKRRDWNTFGQYLKNQ PPV L 
Sbjct: 1   MSTEARKDPTEAGSSSRTTTTTT------AALSRYESQKRRDWNTFGQYLKNQTPPVSLS 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGG 180
           YEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD        
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDI-----N 180

Query: 181 NNNNNNQPMKHL 193
           NNNNN QP+KHL
Sbjct: 181 NNNNNKQPIKHL 181

[Close]

BLAST of CmoCh18G003930 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-68
Identity = 113/132 (85.61%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 33  SRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQ 92
           SRYESQKRRDWNTFGQYLKNQ PPVP+  C+CNHVL+FLRYLDQFGKTKVH+ GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 93  PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKECQAKA 152
           P+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PE+NPF +GAIRVYLREV+ECQAKA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 153 RGIPYKKKKRKR 165
           RGIPYKKKK+K+
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of CmoCh18G003930 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-68
Identity = 113/132 (85.61%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 33  SRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQ 92
           SRYESQKRRDWNTFGQYLKNQ PPVP+  C+CNHVL+FLRYLDQFGKTKVH+ GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 93  PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKECQAKA 152
           P+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PE+NPF +GAIRVYLREV+ECQAKA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 153 RGIPYKKKKRKR 165
           RGIPYKKKK+K+
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of CmoCh18G003930 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-60
Identity = 112/163 (68.71%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 5   PRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNC 64
           P KD  +  SSS+         Q    LSRYESQKRRDWNTF QYLK+Q PP+ + + + 
Sbjct: 8   PTKDPPDHPSSSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDY 67

Query: 65  NHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH 124
            HVL FLRYLDQFGKTKVH   CVFFGQPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH
Sbjct: 68  THVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEH 127

Query: 125 -GGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ 167
            GGSP++NPF NG+IRV+LREV+E QAKARGIPY+KKKR++ +
Sbjct: 128 GGGSPDTNPFANGSIRVHLREVRESQAKARGIPYRKKKRRKTK 170

[Close]

BLAST of CmoCh18G003930 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.6 bits (579), Expect = 8.3e-60
Identity = 109/156 (69.87%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 9   STEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVL 68
           +T + SSS++         G   LSRYE+QKRRDWNTFGQYL+N  PP+ L  C+  HVL
Sbjct: 29  TTSSSSSSSSG------GSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 88

Query: 69  EFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSP 128
           EFLRYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSP
Sbjct: 89  EFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSP 148

Query: 129 ESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 165
           E+NPFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 149 ETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of CmoCh18G003930 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-58
Identity = 112/179 (62.57%), Postives = 134/179 (74.86%), Query Frame = 0


Query: 13  GSSSATAVLDTQHHQ-----GAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHV 72
           GSS   +    Q HQ        ALSRYESQKRRDWNTF QYL+NQ PPV + +C  NH+
Sbjct: 14  GSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHI 73

Query: 73  LEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGS 132
           L+FL+YLDQFGKTKVH+HGCVFFGQ +P   C CPL+QAWGSLDALIGRLRAA+EE+GG 
Sbjct: 74  LDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGL 133

Query: 133 PESNPFGNGAIRVYLREVKECQAKARGIPYKK-KKRKRAQFKANDDGAGGGGGGNNNNN 186
           PE NPF  G IRV+LREV++ QAKARG+PYKK KKRK+     + DG  G  G ++++N
Sbjct: 134 PERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTTGTSSSSN 192

The following BLAST results are available for this feature:

BLAST of CmoCh18G003930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.4e-67	85.61	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
B8AIK3	1.8e-59	74.64	Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1	[more]
Q0E3M2	1.8e-59	74.64	Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1	[more]
Q9SN52	3.1e-59	68.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	1.2e-58	69.87	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CmoCh18G003930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSW5	7.5e-109	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JYM4	2.8e-103	95.34	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S4E614	2.0e-85	83.33	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UU18	2.6e-85	83.33	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0M097	2.1e-82	80.21	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 S...	[more]

BLAST of CmoCh18G003930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955058.1	1.6e-108	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
XP_023541966.1	1.9e-106	97.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
KAG6573307.1	9.4e-106	97.44	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022994266.1	5.7e-103	95.34	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]
XP_008465553.1	4.1e-85	83.33	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]

BLAST of CmoCh18G003930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.7e-68	85.61	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.7e-68	85.61	Protein of unknown function (DUF640)	[more]
AT4G18610.1	2.2e-60	68.71	Protein of unknown function (DUF640)	[more]
AT3G23290.2	8.3e-60	69.87	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.2e-58	62.57	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 27..147 e-value: 5.1E-63 score: 210.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 34..161 score: 77.772079
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 4..173
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 4..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G003930.1	CmoCh18G003930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus