CmoCh18G003720 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr18: 2417819 .. 2419746 (+)
RNA-Seq Expression	CmoCh18G003720
Synteny	CmoCh18G003720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATTGGTTCTGATTCTAGTTTCTGTGTGGCCGATTTGGACCATTCCCTACTCCGATTGTTATGTGGGGCTTATGCTGTAATGGGAAAGTGTGCGAGGATTGAACAATACTTTAAACTAAGTTGTCAAAATCTTGCAGAATACTATTAAGAATATATGTAATTATCTACCTGGCTTAAGTTTTCTGTGTAGAATAGTGGTTGATGACCAATAGAATAGCTAAGCAAAGCCAGAAGCAGACAACCCTAAGGCAAAATACATCAGTTGGGGCCAAGGACAAAAGTAGAGGCATGTGATTGTATTTGAAGGTATTAATCCTCCCAAGTGCAGCAAATCAAGAAAAAGAACCAATTTGCGGTGGTTGAAAGTGTAACAGCCGAATCCCACCACTAGAAAATATTGTCTTTTTTGGGGTTTTCTCTCAAGGTTTTAAAGCGTGTCTACTATTGAGAGGTTTCCAAACAGAAATGATTCGTTCTTCCCTCCAACCAATGCAGGATCTCACAATCCACCCCCTTAGGGCCTAGTGTTCTCTTTGGCACACCACCCGGTGGCTCTAATACCATTTGTAACAGCCCAAGCCCATTGCTAGCAGACTTCTAATGCTTAGAGAAAAATGGGGAGATGGAAATTGGGACGAAATCTATTGAAGCTTACGTGAGAAAATACTAGAAGGCTCAAATGCTTCACTTGGACCATTGCTATGCCAAGATAAAGTCCGACCCTTTGAATTATGTAAAGAAGTGAAGCTGACATATCAATGTCTGTATTAGAAAATGTTCTTTAGAAGTGAAAACCAAGACAGGTAGACTCACTCAACAGTGAAATGTTCGGTTAGTCTTTGGCAGGCTAATTTGACTCCTGAGATATTGGCAGTAGAAAGACACTCCTGTGGTTTTAATTCAATAGAACGTTCATATCTAGTGTCAAAAAGTGCGAGTTTCCATCCAGTTATTATGAGAACTAAAGAAATTTATCCTATTATGTTTAACTATTTATAATTTTTCCCATTTATTTTAGTGCTTTTAGTAGCAAATGTTTCCTTCATTAATTGTCAAGAAACTTGATCTGTTGTGAAATGCTAATGAACTATCTACGATTCTTCAGTGTTGTAACAATGCATGTTGTCTTCTCTAAAAACCACGATGGTGGTGATATGAATCGTTGGTTTGATGTATTTGTTGGCATCTTTTATTGAATTTCAAACTTTCCAAGAGTTCTTTTGCTCTATGATTGTATTTTTTCATATGATTGAAAAATATTGAAAAAAATTTCATATGCTTCAGGTTCAATCGGAAGTTAGAAAGTCTGATGCTTGAAGGAAGAGAGGAAGAATGGGCAGTAAAGCTTATGTTTAAATGGGCAAAAACAGTCACACCTTCTCACGTTGAACAGCTAATAAGAGTGGAACGAGACATAAACAAGGCGCTTCTCATATTTGACTCGGCAACAGCCGAGTATACAAATGGTTTTCAGCATGATCTCAATACTTTTTGGTTCGTGATTAGTAAGATGGTTTCTGCCAACCAGTTCAGGTTAGCAGACACACTTCTTGACAGGATGAAGGAAGATAATTTTGATGTCATTGAGGTTATATTTCTCTCTATTTGTCGGGCTTATGGTTGTATCCATAAGCCATTGGATTCCATTAGAGTTTTCCACAAAATGCAGGATTTCCATTGCAAACGTGTTTGCCATTCTTGTTGAAGAAAATCAATCAAAATTGGCTTTTAGATTTTATAGGTATATGAGAAAAATGGGCATTCCCTACACTGTAAGCCTCTATTAATGTTCTAATCAAAGCCCTTTGCAAGAACAGTGGAACCATGGATAGTGCAATGTACATATTTCGTGACATGTCCAATCATGGGTGTGAACCTGATTCATATACATATGGAACTCTGATCAATGGGTTATGTTGA

mRNA sequence

ATGAAGAAAATTGGTTCTGATTCTAGTTTCTGTGTGGCCGATTTGGACCATTCCCTACTCCGATTGTTATGTGGGGCTTATGCTGTAATGGGAAAGTTCAATCGGAAGTTAGAAAGTCTGATGCTTGAAGGAAGAGAGGAAGAATGGGCAGTAAAGCTTATGTTTAAATGGGCAAAAACAGTCACACCTTCTCACGTTGAACAGCTAATAAGAGTGGAACGAGACATAAACAAGGCGCTTCTCATATTTGACTCGGCAACAGCCGAGTATACAAATGCCTCTATTAATGTTCTAATCAAAGCCCTTTGCAAGAACAGTGGAACCATGGATAGTGCAATGTACATATTTCGTGACATGTCCAATCATGGGTGTGAACCTGATTCATATACATATGGAACTCTGATCAATGGGTTATGTTGA

Coding sequence (CDS)

ATGAAGAAAATTGGTTCTGATTCTAGTTTCTGTGTGGCCGATTTGGACCATTCCCTACTCCGATTGTTATGTGGGGCTTATGCTGTAATGGGAAAGTTCAATCGGAAGTTAGAAAGTCTGATGCTTGAAGGAAGAGAGGAAGAATGGGCAGTAAAGCTTATGTTTAAATGGGCAAAAACAGTCACACCTTCTCACGTTGAACAGCTAATAAGAGTGGAACGAGACATAAACAAGGCGCTTCTCATATTTGACTCGGCAACAGCCGAGTATACAAATGCCTCTATTAATGTTCTAATCAAAGCCCTTTGCAAGAACAGTGGAACCATGGATAGTGCAATGTACATATTTCGTGACATGTCCAATCATGGGTGTGAACCTGATTCATATACATATGGAACTCTGATCAATGGGTTATGTTGA

Protein sequence

MKKIGSDSSFCVADLDHSLLRLLCGAYAVMGKFNRKLESLMLEGREEEWAVKLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTNASINVLIKALCKNSGTMDSAMYIFRDMSNHGCEPDSYTYGTLINGLC

Homology

[Close]

BLAST of CmoCh18G003720 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.7e-15
Identity = 55/198 (27.78%), Postives = 73/198 (36.87%), Query Frame = 0


Query: 53  LMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN-------------------- 112
           +MFKW+K +TPS V +L+R E+D+ K++ +FDSATAEY N                    
Sbjct: 6   MMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSAN 65

Query: 113 ------------------------------------------------------------ 140
                                                                       
Sbjct: 66  KFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYV 125

[Close]

BLAST of CmoCh18G003720 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 60  TVTPSHVEQLIRVERDINKALLIFDSAT---AEYTNASINVLIKALCKNSGTMDSAMYIF 119
           TV   ++E     E D++ AL I +        ++N S+NV++   CK  G ++ A+   
Sbjct: 229 TVMQGYIE-----EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK-EGRVEDALNFI 288

Query: 120 RDMSNH-GCEPDSYTYGTLINGLC 140
           ++MSN  G  PD YT+ TL+NGLC
Sbjct: 289 QEMSNQDGFFPDQYTFNTLVNGLC 306

[Close]

BLAST of CmoCh18G003720 vs. ExPASy Swiss-Prot
Match: P0C8Q3 (Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana OX=3702 GN=At4g19890 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 91  TNASINVLIKALCKNSGTMDSAMYIFRDMSNHGCEPDSYTYGTLINGLC 140
           T  +   +I   CK  G +D A+  F +M  HGC PDS+TYG+LI+GLC
Sbjct: 532 TKETYTSMISCYCK-EGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLC 579

[Close]

BLAST of CmoCh18G003720 vs. ExPASy Swiss-Prot
Match: P0C8A0 (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX=3702 GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-05
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 97  VLIKALCKNSGTMDSAMYIFRDMSNHGCEPDSYTYGTLINGLC 140
           VLI+ALC+    MD AM +F +M  +GCE D  TY  LI+G C
Sbjct: 311 VLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFC 353

[Close]

BLAST of CmoCh18G003720 vs. ExPASy Swiss-Prot
Match: Q9LVQ5 (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-05
Identity = 39/118 (33.05%), Postives = 56/118 (47.46%), Query Frame = 0


Query: 33  FNRKLESLMLEGREEEWAVKLMFKW-AKTVTPSHVEQLIRVERDINKALLIFDSATAEYT 92
           FN  ++  + EG  +E A+K+ +   AK +TPS V   + ++     A   FD A   Y 
Sbjct: 336 FNALIDGHISEGNFKE-ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA--EFDLARGFYM 395

Query: 93  NASIN----------VLIKALCKNSGTMDSAMYIFRDMSNHGCEPDSYTYGTLINGLC 140
               N           +I  LCKN G +D A+ +  +MS  G +PD  TY  LING C
Sbjct: 396 RMKRNGVCVGRITYTGMIDGLCKN-GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC 449

[Close]

BLAST of CmoCh18G003720 vs. ExPASy TrEMBL
Match: A0A6J1CDW1 (pentatricopeptide repeat-containing protein At5g46100 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010648 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 77/199 (38.69%), Postives = 82/199 (41.21%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTPSHVEQLI+ ERDINKALLIFDSAT+EY N                   
Sbjct: 23  KAMFKWAKTVTPSHVEQLIQAERDINKALLIFDSATSEYANGFKHDLNTFRLMISKLVSA 82

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 83  NQFRSAETLLDRMNEEKFDVTEDIFLTICRAYGRVHKPLDSIRIFHKMEDFQCKPTEKSY 142

[Close]

BLAST of CmoCh18G003720 vs. ExPASy TrEMBL
Match: A0A6J1CF14 (pentatricopeptide repeat-containing protein At5g46100 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010648 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 77/199 (38.69%), Postives = 82/199 (41.21%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTPSHVEQLI+ ERDINKALLIFDSAT+EY N                   
Sbjct: 4   KAMFKWAKTVTPSHVEQLIQAERDINKALLIFDSATSEYANGFKHDLNTFRLMISKLVSA 63

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 64  NQFRSAETLLDRMNEEKFDVTEDIFLTICRAYGRVHKPLDSIRIFHKMEDFQCKPTEKSY 123

[Close]

BLAST of CmoCh18G003720 vs. ExPASy TrEMBL
Match: A0A6J1KLZ3 (pentatricopeptide repeat-containing protein At5g46100 OS=Cucurbita maxima OX=3661 GN=LOC111495767 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 78/199 (39.20%), Postives = 83/199 (41.71%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTP+HVEQLI+ ERDINKALLIFDSATAEYTN                   
Sbjct: 4   KAMFKWAKTVTPAHVEQLIQAERDINKALLIFDSATAEYTNGFKHDLNTFRLMIRKLVSA 63

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 64  NQFRLAETLLDRMKEEKLDVTEDIFLSICRAYGRIHRPLDSIRVFHKMQDFHCKPTEKSY 123

[Close]

BLAST of CmoCh18G003720 vs. ExPASy TrEMBL
Match: A0A6J1EKD3 (pentatricopeptide repeat-containing protein At5g46100 OS=Cucurbita moschata OX=3662 GN=LOC111434127 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 77/199 (38.69%), Postives = 83/199 (41.71%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTP+HVEQL++ ERDINKALLIFDSATAEYTN                   
Sbjct: 4   KAMFKWAKTVTPAHVEQLVQAERDINKALLIFDSATAEYTNGFKHDLNTFRLMIRKLVSA 63

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 64  NQFRLAETLLDRMKEEKFDVTEDIFLSICRAYGRVHRPLDSIRVFHKMQDFHCKPTEKSY 123

[Close]

BLAST of CmoCh18G003720 vs. ExPASy TrEMBL
Match: A0A0A0LRZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075590 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 81/231 (35.06%), Postives = 92/231 (39.83%), Query Frame = 0


Query: 28  AVMGKFNRKLES-LMLEGREEE-------WAVKLMFKWAKTVTPSHVEQLIRVERDINKA 87
           A +  F RKLE  +  E R+ +          K MFKWAKTVTP+HV+QLI+ ERDI KA
Sbjct: 79  AFISWFRRKLEFWVQSEVRQSDSLNKRRTMGSKAMFKWAKTVTPTHVQQLIQAERDIKKA 138

Query: 88  LLIFDSATAEYTN----------------------------------------------- 140
           L+IFDSATAEY N                                               
Sbjct: 139 LIIFDSATAEYANGFKHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSI 198

[Close]

BLAST of CmoCh18G003720 vs. NCBI nr
Match: XP_038893902.1 (pentatricopeptide repeat-containing protein At5g46100 [Benincasa hispida])

HSP 1 Score: 118.2 bits (295), Expect = 5.5e-23
Identity = 75/199 (37.69%), Postives = 83/199 (41.71%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKT+TP+HVEQLIR E++INKALLIFDSATAEYTN                   
Sbjct: 4   KAMFKWAKTITPAHVEQLIRAEQEINKALLIFDSATAEYTNGFKHDLNTFRLMISKLVSA 63

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 64  NQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRVHKPLDSIRVFHKMQDFHCKPTEKSY 123

[Close]

BLAST of CmoCh18G003720 vs. NCBI nr
Match: XP_022139832.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia] >XP_022139834.1 pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-23
Identity = 77/199 (38.69%), Postives = 82/199 (41.21%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTPSHVEQLI+ ERDINKALLIFDSAT+EY N                   
Sbjct: 4   KAMFKWAKTVTPSHVEQLIQAERDINKALLIFDSATSEYANGFKHDLNTFRLMISKLVSA 63

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 64  NQFRSAETLLDRMNEEKFDVTEDIFLTICRAYGRVHKPLDSIRIFHKMEDFQCKPTEKSY 123

[Close]

BLAST of CmoCh18G003720 vs. NCBI nr
Match: XP_022139830.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia] >XP_022139831.1 pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-23
Identity = 77/199 (38.69%), Postives = 82/199 (41.21%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTPSHVEQLI+ ERDINKALLIFDSAT+EY N                   
Sbjct: 23  KAMFKWAKTVTPSHVEQLIQAERDINKALLIFDSATSEYANGFKHDLNTFRLMISKLVSA 82

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 83  NQFRSAETLLDRMNEEKFDVTEDIFLTICRAYGRVHKPLDSIRIFHKMEDFQCKPTEKSY 142

[Close]

BLAST of CmoCh18G003720 vs. NCBI nr
Match: XP_023001715.1 (pentatricopeptide repeat-containing protein At5g46100 [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-23
Identity = 78/199 (39.20%), Postives = 83/199 (41.71%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTP+HVEQLI+ ERDINKALLIFDSATAEYTN                   
Sbjct: 4   KAMFKWAKTVTPAHVEQLIQAERDINKALLIFDSATAEYTNGFKHDLNTFRLMIRKLVSA 63

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 64  NQFRLAETLLDRMKEEKLDVTEDIFLSICRAYGRIHRPLDSIRVFHKMQDFHCKPTEKSY 123

[Close]

BLAST of CmoCh18G003720 vs. NCBI nr
Match: XP_023519166.1 (pentatricopeptide repeat-containing protein At5g46100 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-23
Identity = 78/199 (39.20%), Postives = 83/199 (41.71%), Query Frame = 0


Query: 52  KLMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN------------------- 111
           K MFKWAKTVTP+HVEQLI+ ERDINKALLIFDSATAEYTN                   
Sbjct: 4   KAMFKWAKTVTPAHVEQLIQAERDINKALLIFDSATAEYTNGFKHDLNTFRLMIRKLVSA 63

Query: 112 ------------------------------------------------------------ 140
                                                                       
Sbjct: 64  NQFRLAETLLDRMKEEKFDVTEDIFLSICRAYGRIHRPLDSIRVFHKMQDFHCKPTEKSY 123

[Close]

BLAST of CmoCh18G003720 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-16
Identity = 55/198 (27.78%), Postives = 73/198 (36.87%), Query Frame = 0


Query: 53  LMFKWAKTVTPSHVEQLIRVERDINKALLIFDSATAEYTN-------------------- 112
           +MFKW+K +TPS V +L+R E+D+ K++ +FDSATAEY N                    
Sbjct: 6   MMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSAN 65

Query: 113 ------------------------------------------------------------ 140
                                                                       
Sbjct: 66  KFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYV 125

[Close]

BLAST of CmoCh18G003720 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-07
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 60  TVTPSHVEQLIRVERDINKALLIFDSAT---AEYTNASINVLIKALCKNSGTMDSAMYIF 119
           TV   ++E     E D++ AL I +        ++N S+NV++   CK  G ++ A+   
Sbjct: 229 TVMQGYIE-----EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK-EGRVEDALNFI 288

Query: 120 RDMSNH-GCEPDSYTYGTLINGLC 140
           ++MSN  G  PD YT+ TL+NGLC
Sbjct: 289 QEMSNQDGFFPDQYTFNTLVNGLC 306

[Close]

BLAST of CmoCh18G003720 vs. TAIR 10
Match: AT4G19890.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 5.9e-07
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 91  TNASINVLIKALCKNSGTMDSAMYIFRDMSNHGCEPDSYTYGTLINGLC 140
           T  +   +I   CK  G +D A+  F +M  HGC PDS+TYG+LI+GLC
Sbjct: 532 TKETYTSMISCYCK-EGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLC 579

[Close]

BLAST of CmoCh18G003720 vs. TAIR 10
Match: AT3G49730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 97  VLIKALCKNSGTMDSAMYIFRDMSNHGCEPDSYTYGTLINGLC 140
           VLI+ALC+    MD AM +F +M  +GCE D  TY  LI+G C
Sbjct: 311 VLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFC 353

[Close]

BLAST of CmoCh18G003720 vs. TAIR 10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 39/118 (33.05%), Postives = 56/118 (47.46%), Query Frame = 0


Query: 33  FNRKLESLMLEGREEEWAVKLMFKW-AKTVTPSHVEQLIRVERDINKALLIFDSATAEYT 92
           FN  ++  + EG  +E A+K+ +   AK +TPS V   + ++     A   FD A   Y 
Sbjct: 376 FNALIDGHISEGNFKE-ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA--EFDLARGFYM 435

Query: 93  NASIN----------VLIKALCKNSGTMDSAMYIFRDMSNHGCEPDSYTYGTLINGLC 140
               N           +I  LCKN G +D A+ +  +MS  G +PD  TY  LING C
Sbjct: 436 RMKRNGVCVGRITYTGMIDGLCKN-GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC 489

The following BLAST results are available for this feature:

BLAST of CmoCh18G003720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNL2	5.7e-15	27.78	Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX...	[more]
Q9LFF1	6.3e-06	35.71	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
P0C8Q3	8.3e-06	46.94	Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana OX...	[more]
P0C8A0	1.8e-05	51.16	Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX...	[more]
Q9LVQ5	1.8e-05	33.05	Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmoCh18G003720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDW1	3.5e-23	38.69	pentatricopeptide repeat-containing protein At5g46100 isoform X1 OS=Momordica ch...	[more]
A0A6J1CF14	3.5e-23	38.69	pentatricopeptide repeat-containing protein At5g46100 isoform X2 OS=Momordica ch...	[more]
A0A6J1KLZ3	3.5e-23	39.20	pentatricopeptide repeat-containing protein At5g46100 OS=Cucurbita maxima OX=366...	[more]
A0A6J1EKD3	4.5e-23	38.69	pentatricopeptide repeat-containing protein At5g46100 OS=Cucurbita moschata OX=3...	[more]
A0A0A0LRZ4	1.1e-21	35.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075590 PE=4 SV=1	[more]

BLAST of CmoCh18G003720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893902.1	5.5e-23	37.69	pentatricopeptide repeat-containing protein At5g46100 [Benincasa hispida]	[more]
XP_022139832.1	7.2e-23	38.69	pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica char...	[more]
XP_022139830.1	7.2e-23	38.69	pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica char...	[more]
XP_023001715.1	7.2e-23	39.20	pentatricopeptide repeat-containing protein At5g46100 [Cucurbita maxima]	[more]
XP_023519166.1	7.2e-23	39.20	pentatricopeptide repeat-containing protein At5g46100 [Cucurbita pepo subsp. pep...	[more]

BLAST of CmoCh18G003720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46100.1	4.1e-16	27.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53700.1	4.5e-07	35.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G19890.1	5.9e-07	46.94	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G49730.1	1.3e-06	51.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G55840.1	1.3e-06	33.05	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 45..139 e-value: 3.0E-14 score: 54.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 94..128 e-value: 2.7E-6 score: 25.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 94..139 e-value: 1.9E-14 score: 53.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 91..126 score: 11.038087
None	No IPR available	PANTHER	PTHR47933:SF25	EMP16	coord: 51..89 coord: 91..139
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 51..89
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 91..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G003720.1	CmoCh18G003720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding