CmoCh18G003610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	dof zinc finger protein DOF1.4-like
Location	Cmo_Chr18: 2354492 .. 2356449 (-)
RNA-Seq Expression	CmoCh18G003610
Synteny	CmoCh18G003610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTTGTTATTATATTCTATATAATCATCAAATTAATCCCTTAGAATTCCTCTCCCAAGCTCTAAGAAAATGGCCCTCATCTCTTCATCTGCTACCCAATACCCACAAGTAAGTAAAGTTTCCTCCTTTTTTGTCTCTCTCTCTCAAATTATTAGCTCCAAAATTGACCATTCGTCATTTGATTTTTGTTCCTTTCCTCTTGGAATGGAATAAAATTTGTGTTTCTAATCAAATCCGTGTTGTTTTTGTTCTTTGTTTTCCATATAGATGAAGAATCATCAATCCAATTTAGATCATAATGATGAACATCATCAAAAGGGTTTGAATCTTATGGGATCTTCTTCTAGATCAACAATGGTTAAACAACAACAACCACCACAAGAGCCTCTTAGATGCCCTCGTTGTGATTCTTCCAATACCAAATTTTGTTATTACAACAATTACAGCTTGTCTCAGCCTCGTTACTTTTGTAAGGCGTGCAAGCGCTACTGGACACGTGGTGGCACTTTGAGAAACGTCCCCGTCGGCGGCGGCTGCAGGAAAAACAAGCGTCTCAAACGATCTACCACCACCGCCACCGCCACTGCCACCACTCATTCTTCATCGTCCCCGGCACCGGATTCCACTTCTTCGTCTTCGACTTCTTGTGCTAATAATATCTTTTATGGCTCGGATCTGAACGTTCCATTTTCCGGGTATGATCATCTTCAACCTCAGTTAAATGCTCTTGGATTAGGGTTTTCTTCTACTAATATGGATCATAGGGATCTTCATGTTAATGGGTTCAATTCAAGTTCGGTTTTTTCGAGTTATTTATTTGGTAACCCATCTTGGAGTTCTAAGTTCATGAATGGAGTTGGTTCGAGTGTTTTTGATAACCTAGATTCTCCACCGTTTGATCAGTATCATGTGATGGGATCCAACGGTGGAGATCAACTCAAAGATGAGATGAAGAGATTGGATTGGAATCAGCAAAATCAGAGAGATGAAATTATTGCTCAATCAAATGATCCAAATTGTCTTTATGCCAATTGGAGCTCTCAAATTTGGCATGATCCAACAAATCTTGGTTCATCTCTTGGTTCATCAATTACTTCTTCTCTCATTTAGAGAGAGAGAAATTAATCAAACCCCACCTTGATTTCTTCACTAGATTTTAGAATTTCTTCATTTTCCCCTTCTTTTCTCTTGTGAAATTTAATGGGTTTCGTTTAGTTCTTACAAAAAAGGCCAAAAAACGACCAAATTTGGGGATCGGAGTGTTCATGTCAGCAGCAAAAAGGGAAAAAGTTAGAAAATTTTCAATTTTATTTCCATTTCCCATATGGGTTTTGCGCTGAGAGGAACCTCGGATCCCTTTATGATGAATATGATCCGCCATGGAAGGGATCAATTGAAGCTGTCAAGAAAGTTGTAATTTTTGGTTTAATTTCAAGTAAGTTTGAGTATTGTTATGTTGCATTGTACATATTGGGGAGAAATGCAGTTGATTTTACACTATTTTCAGCAGGTTTGTGGGGTTTAGTGGGGGATGGTATATGTTGCTCTTCCTCAGTCAGAGATCAGCTGAGTAAGGAATTTGACTTTTTTTGGTGTTTTTTCAACTTTTGTGTTCTTGGTGGGGCTGGGTATAATGGTGTCATGGTATAGAGAGGAAAGGGGAGATTTGGTTCTTTGGAAAACCTTTGTATTGATCACTTCATTCAGCTCATCATATGGTTTGATATGAAATTCATAATGATAGCATGGTATTTTAGCTATATTAAATATATTATAGCTTTAATAAAACGCTATAAAATGTTTTTATAGCAACGTATATAAGCTATTATTTCATACTCTATTATAACATTTATTATAGTTATGAAAAAACGCTATGAAAATTCTTAGAATTTTAATAATATGGACTGCCCTGACGTACTAAA

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTTGTTATTATATTCTATATAATCATCAAATTAATCCCTTAGAATTCCTCTCCCAAGCTCTAAGAAAATGGCCCTCATCTCTTCATCTGCTACCCAATACCCACAAATGAAGAATCATCAATCCAATTTAGATCATAATGATGAACATCATCAAAAGGGTTTGAATCTTATGGGATCTTCTTCTAGATCAACAATGGTTAAACAACAACAACCACCACAAGAGCCTCTTAGATGCCCTCGTTGTGATTCTTCCAATACCAAATTTTGTTATTACAACAATTACAGCTTGTCTCAGCCTCGTTACTTTTGTAAGGCGTGCAAGCGCTACTGGACACGTGGTGGCACTTTGAGAAACGTCCCCGTCGGCGGCGGCTGCAGGAAAAACAAGCGTCTCAAACGATCTACCACCACCGCCACCGCCACTGCCACCACTCATTCTTCATCGTCCCCGGCACCGGATTCCACTTCTTCGTCTTCGACTTCTTGTGCTAATAATATCTTTTATGGCTCGGATCTGAACGTTCCATTTTCCGGGTTTGTGGGGTTTAGTGGGGGATGGTATATGTTGCTCTTCCTCAGTCAGAGATCAGCTGAGTAAGGAATTTGACTTTTTTTGGTGTTTTTTCAACTTTTGTGTTCTTGGTGGGGCTGGGTATAATGGTGTCATGGTATAGAGAGGAAAGGGGAGATTTGGTTCTTTGGAAAACCTTTGTATTGATCACTTCATTCAGCTCATCATATGGTTTGATATGAAATTCATAATGATAGCATGGTATTTTAGCTATATTAAATATATTATAGCTTTAATAAAACGCTATAAAATGTTTTTATAGCAACGTATATAAGCTATTATTTCATACTCTATTATAACATTTATTATAGTTATGAAAAAACGCTATGAAAATTCTTAGAATTTTAATAATATGGACTGCCCTGACGTACTAAA

Coding sequence (CDS)

ATGGCCCTCATCTCTTCATCTGCTACCCAATACCCACAAATGAAGAATCATCAATCCAATTTAGATCATAATGATGAACATCATCAAAAGGGTTTGAATCTTATGGGATCTTCTTCTAGATCAACAATGGTTAAACAACAACAACCACCACAAGAGCCTCTTAGATGCCCTCGTTGTGATTCTTCCAATACCAAATTTTGTTATTACAACAATTACAGCTTGTCTCAGCCTCGTTACTTTTGTAAGGCGTGCAAGCGCTACTGGACACGTGGTGGCACTTTGAGAAACGTCCCCGTCGGCGGCGGCTGCAGGAAAAACAAGCGTCTCAAACGATCTACCACCACCGCCACCGCCACTGCCACCACTCATTCTTCATCGTCCCCGGCACCGGATTCCACTTCTTCGTCTTCGACTTCTTGTGCTAATAATATCTTTTATGGCTCGGATCTGAACGTTCCATTTTCCGGGTTTGTGGGGTTTAGTGGGGGATGGTATATGTTGCTCTTCCTCAGTCAGAGATCAGCTGAGTAA

Protein sequence

MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATATTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGFVGFSGGWYMLLFLSQRSAE

Homology

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BLAST of CmoCh18G003610 vs. ExPASy Swiss-Prot
Match: Q9FZA4 (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana OX=3702 GN=DOF1.4 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-32
Identity = 74/118 (62.71%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 34  LMGSSSRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGT 93
           ++ SS +    +Q Q PQ  L+CPRCDSSNTKFCYYNNYSLSQPR+FCKACKRYWTRGGT
Sbjct: 7   IVASSHQQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGT 66

Query: 94  LRNVPVGGGCRKNKRLKR----STTTATATATTHSSSSPAPDSTSSSSTSCANNIFYG 148
           LRNVPVGG  RKNKR+KR    +TTTA+  +TT+SSS   P   S  S+   + +FYG
Sbjct: 67  LRNVPVGGSYRKNKRVKRPSTATTTTASTVSTTNSSSPNNPHQISHFSSMNHHPLFYG 124

[Close]

BLAST of CmoCh18G003610 vs. ExPASy Swiss-Prot
Match: Q84TE9 (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.4e-28
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 39  SRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVP 98
           S +T V + QPP+  LRCPRCDS+NTKFCYYNNYSL+QPRYFCK+C+RYWT+GGTLRN+P
Sbjct: 40  SPATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIP 99

Query: 99  VGGGCRKNKRLKRSTTTATATATTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFS 156
           VGGGCRKNKR       +T++A     ++P P S      S A    Y ++ ++  S
Sbjct: 100 VGGGCRKNKR-------STSSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLS 149

[Close]

BLAST of CmoCh18G003610 vs. ExPASy Swiss-Prot
Match: Q9ZV33 (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 4.8e-27
Identity = 60/118 (50.85%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 37  SSSRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRN 96
           ++ R+ + K  QPP+  L+CPRCDS+NTKFCY+NNY+L+QPR+FCKAC+RYWTRGG LRN
Sbjct: 77  AAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRN 136

Query: 97  VPVGGGCRKNKRLKRSTTTATATATTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPF 155
           VPVGGGCR+NK+ K   + +++++    S+S   ++TS ++TS   N+   ++   PF
Sbjct: 137 VPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMV-NATSPTNTS---NVQLQTNSQFPF 190

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BLAST of CmoCh18G003610 vs. ExPASy Swiss-Prot
Match: O24463 (Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 56/92 (60.87%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 52  EPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKR 111
           E L+CPRCDS+NTKFCYYNNYS+SQPRYFCKAC+RYWT GGTLRNVP+GGGCRKNK   R
Sbjct: 58  EALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNKHASR 117

Query: 112 STTTATATATTHSSSSPAPDSTSSSSTSCANN 144
               +  ++++ ++ +P   ST++SS++ + N
Sbjct: 118 FVLGSHTSSSSSATYAPLSPSTNASSSNMSIN 149

[Close]

BLAST of CmoCh18G003610 vs. ExPASy Swiss-Prot
Match: Q9M1E6 (Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana OX=3702 GN=DOF3.2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-26
Identity = 65/122 (53.28%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 21  LDHNDEHHQKGLNLMGSSSRSTMVKQQQ----------PPQEPLRCPRCDSSNTKFCYYN 80
           +D++  H     N+MG SS ST   Q Q          PP++ LRCPRCDS+NTKFCYYN
Sbjct: 1   MDYSSMHQ----NVMGVSSCSTQDYQNQKKPLSATRPAPPEQSLRCPRCDSTNTKFCYYN 60

Query: 81  NYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRST----TTATATATTHSSS 129
           NYSLSQPRYFCK+C+RYWT+GG LRN+P+GG  RK+KR   +T    TT   T T    S
Sbjct: 61  NYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSSATKSLRTTPEPTMTHDGKS 118

[Close]

BLAST of CmoCh18G003610 vs. ExPASy TrEMBL
Match: A0A6J1GRN9 (dof zinc finger protein DOF1.4-like OS=Cucurbita moschata OX=3662 GN=LOC111456846 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.3e-82
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60
           MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD
Sbjct: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60

Query: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120
           SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA
Sbjct: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120

Query: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGF 158
           TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSG+
Sbjct: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGY 157

[Close]

BLAST of CmoCh18G003610 vs. ExPASy TrEMBL
Match: A0A6J1JVU5 (dof zinc finger protein DOF1.6-like OS=Cucurbita maxima OX=3661 GN=LOC111490162 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79
Identity = 153/157 (97.45%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60
           MALISSSA QYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQP QEPLRCPRCD
Sbjct: 1   MALISSSANQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPQQEPLRCPRCD 60

Query: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120
           SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRST TATATA
Sbjct: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTATATATA 120

Query: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGF 158
           TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSG+
Sbjct: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGY 157

[Close]

BLAST of CmoCh18G003610 vs. ExPASy TrEMBL
Match: A0A6J1KHG1 (dof zinc finger protein DOF1.4-like OS=Cucurbita maxima OX=3661 GN=LOC111495781 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.3e-54
Identity = 123/173 (71.10%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGL-NLMGSSSRSTMVKQQ--------QPPQ 60
           M LISSSA Q+PQMKNH ++LDH+  HHQKGL NLM SSS   ++ +Q        Q  Q
Sbjct: 8   MVLISSSANQWPQMKNHPTSLDHDHHHHQKGLNNLMPSSSSGLVMDKQHDQKTQLKQHQQ 67

Query: 61  EPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKR 120
           +PLRCPRCDSSNTKFCYYNNYSLSQPR+FCKACKRYWTRGGTLRNVPVGGGCRKNKRLKR
Sbjct: 68  DPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKR 127

Query: 121 -----STTTATATATTHSSSSPAPDSTSSSSTSCANNIFYG--SDLNVPFSGF 158
                +TTT T T TT + +SPAPDSTSSSSTSC  N+FY   SDLNVPFSG+
Sbjct: 128 PSSSTTTTTTTTTTTTAAVTSPAPDSTSSSSTSCP-NMFYASTSDLNVPFSGY 179

[Close]

BLAST of CmoCh18G003610 vs. ExPASy TrEMBL
Match: A0A5D3DSJ1 (Dof zinc finger protein DOF1.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00930 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 124/182 (68.13%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 1   MALISSSATQYPQM---KNHQSNLDHNDEHHQKGLNLMGSSS-------------RSTMV 60
           M LISSS  Q+PQM    NH ++LDH+   HQKGLNL+GSSS             ++   
Sbjct: 8   MVLISSSPNQWPQMMKNNNHPTSLDHD---HQKGLNLIGSSSGIIMDNNNKQQDQKTQQK 67

Query: 61  KQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCR 120
           +QQQ  QEPLRCPRCDSSNTKFCYYNNYSLSQPR+FCKACKRYWTRGGTLRNVPVGGGCR
Sbjct: 68  QQQQHQQEPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCR 127

Query: 121 KNKRLKRSTTTATATATTHSSSSP---APDSTSSSSTSC----ANNIFYG--SDLNVPFS 158
           KNKRLKR T  +T T  THSSSSP   APDSTSSSSTSC     +NIFYG  SDLN+PFS
Sbjct: 128 KNKRLKRPTIASTTTTVTHSSSSPAPTAPDSTSSSSTSCNTNPLHNIFYGSTSDLNLPFS 186

[Close]

BLAST of CmoCh18G003610 vs. ExPASy TrEMBL
Match: A0A1S3B763 (dof zinc finger protein DOF1.4-like OS=Cucumis melo OX=3656 GN=LOC103486524 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 124/182 (68.13%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 1   MALISSSATQYPQM---KNHQSNLDHNDEHHQKGLNLMGSSS-------------RSTMV 60
           M LISSS  Q+PQM    NH ++LDH+   HQKGLNL+GSSS             ++   
Sbjct: 8   MVLISSSPNQWPQMMKNNNHPTSLDHD---HQKGLNLIGSSSGIIMDNNNKQQDQKTQQK 67

Query: 61  KQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCR 120
           +QQQ  QEPLRCPRCDSSNTKFCYYNNYSLSQPR+FCKACKRYWTRGGTLRNVPVGGGCR
Sbjct: 68  QQQQHQQEPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCR 127

Query: 121 KNKRLKRSTTTATATATTHSSSSP---APDSTSSSSTSC----ANNIFYG--SDLNVPFS 158
           KNKRLKR T  +T T  THSSSSP   APDSTSSSSTSC     +NIFYG  SDLN+PFS
Sbjct: 128 KNKRLKRPTIASTTTTVTHSSSSPAPTAPDSTSSSSTSCNTNPLHNIFYGSTSDLNLPFS 186

[Close]

BLAST of CmoCh18G003610 vs. NCBI nr
Match: XP_022954648.1 (dof zinc finger protein DOF1.4-like [Cucurbita moschata])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60
           MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD
Sbjct: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60

Query: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120
           SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA
Sbjct: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120

Query: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGF 158
           TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSG+
Sbjct: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGY 157

[Close]

BLAST of CmoCh18G003610 vs. NCBI nr
Match: KAG6573279.1 (Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012444.1 Dof zinc finger protein DOF5.3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 7.3e-81
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60
           MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD
Sbjct: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60

Query: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120
           SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRST TATATA
Sbjct: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTATATATA 120

Query: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGF 158
           TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSG+
Sbjct: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGY 157

[Close]

BLAST of CmoCh18G003610 vs. NCBI nr
Match: XP_022994442.1 (dof zinc finger protein DOF1.6-like [Cucurbita maxima])

HSP 1 Score: 305.8 bits (782), Expect = 2.4e-79
Identity = 153/157 (97.45%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60
           MALISSSA QYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQP QEPLRCPRCD
Sbjct: 1   MALISSSANQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPQQEPLRCPRCD 60

Query: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120
           SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRST TATATA
Sbjct: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTATATATA 120

Query: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGF 158
           TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSG+
Sbjct: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGY 157

[Close]

BLAST of CmoCh18G003610 vs. NCBI nr
Match: XP_023542884.1 (dof zinc finger protein DOF1.6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60
           MALISSSATQYPQMKNHQSNLDHN+EHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD
Sbjct: 1   MALISSSATQYPQMKNHQSNLDHNNEHHQKGLNLMGSSSRSTMVKQQQPPQEPLRCPRCD 60

Query: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTTTATATA 120
           SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTT    TA
Sbjct: 61  SSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTT----TA 120

Query: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGF 158
           TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSG+
Sbjct: 121 TTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFSGY 153

[Close]

BLAST of CmoCh18G003610 vs. NCBI nr
Match: XP_023001732.1 (dof zinc finger protein DOF1.4-like [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-53
Identity = 123/173 (71.10%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MALISSSATQYPQMKNHQSNLDHNDEHHQKGL-NLMGSSSRSTMVKQQ--------QPPQ 60
           M LISSSA Q+PQMKNH ++LDH+  HHQKGL NLM SSS   ++ +Q        Q  Q
Sbjct: 8   MVLISSSANQWPQMKNHPTSLDHDHHHHQKGLNNLMPSSSSGLVMDKQHDQKTQLKQHQQ 67

Query: 61  EPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKR 120
           +PLRCPRCDSSNTKFCYYNNYSLSQPR+FCKACKRYWTRGGTLRNVPVGGGCRKNKRLKR
Sbjct: 68  DPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKR 127

Query: 121 -----STTTATATATTHSSSSPAPDSTSSSSTSCANNIFYG--SDLNVPFSGF 158
                +TTT T T TT + +SPAPDSTSSSSTSC  N+FY   SDLNVPFSG+
Sbjct: 128 PSSSTTTTTTTTTTTTAAVTSPAPDSTSSSSTSCP-NMFYASTSDLNVPFSGY 179

[Close]

BLAST of CmoCh18G003610 vs. TAIR 10
Match: AT1G28310.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-33
Identity = 74/118 (62.71%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 34  LMGSSSRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGT 93
           ++ SS +    +Q Q PQ  L+CPRCDSSNTKFCYYNNYSLSQPR+FCKACKRYWTRGGT
Sbjct: 7   IVASSHQQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGT 66

Query: 94  LRNVPVGGGCRKNKRLKR----STTTATATATTHSSSSPAPDSTSSSSTSCANNIFYG 148
           LRNVPVGG  RKNKR+KR    +TTTA+  +TT+SSS   P   S  S+   + +FYG
Sbjct: 67  LRNVPVGGSYRKNKRVKRPSTATTTTASTVSTTNSSSPNNPHQISHFSSMNHHPLFYG 124

[Close]

BLAST of CmoCh18G003610 vs. TAIR 10
Match: AT1G28310.2 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-33
Identity = 74/118 (62.71%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 34  LMGSSSRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGT 93
           ++ SS +    +Q Q PQ  L+CPRCDSSNTKFCYYNNYSLSQPR+FCKACKRYWTRGGT
Sbjct: 21  IVASSHQQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGT 80

Query: 94  LRNVPVGGGCRKNKRLKR----STTTATATATTHSSSSPAPDSTSSSSTSCANNIFYG 148
           LRNVPVGG  RKNKR+KR    +TTTA+  +TT+SSS   P   S  S+   + +FYG
Sbjct: 81  LRNVPVGGSYRKNKRVKRPSTATTTTASTVSTTNSSSPNNPHQISHFSSMNHHPLFYG 138

[Close]

BLAST of CmoCh18G003610 vs. TAIR 10
Match: AT5G60200.1 (TARGET OF MONOPTEROS 6 )

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-29
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 39  SRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVP 98
           S +T V + QPP+  LRCPRCDS+NTKFCYYNNYSL+QPRYFCK+C+RYWT+GGTLRN+P
Sbjct: 40  SPATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIP 99

Query: 99  VGGGCRKNKRLKRSTTTATATATTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPFS 156
           VGGGCRKNKR       +T++A     ++P P S      S A    Y ++ ++  S
Sbjct: 100 VGGGCRKNKR-------STSSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLS 149

[Close]

BLAST of CmoCh18G003610 vs. TAIR 10
Match: AT2G28810.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-28
Identity = 60/118 (50.85%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 37  SSSRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRN 96
           ++ R+ + K  QPP+  L+CPRCDS+NTKFCY+NNY+L+QPR+FCKAC+RYWTRGG LRN
Sbjct: 77  AAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRN 136

Query: 97  VPVGGGCRKNKRLKRSTTTATATATTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPF 155
           VPVGGGCR+NK+ K   + +++++    S+S   ++TS ++TS   N+   ++   PF
Sbjct: 137 VPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMV-NATSPTNTS---NVQLQTNSQFPF 190

[Close]

BLAST of CmoCh18G003610 vs. TAIR 10
Match: AT2G28810.2 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-28
Identity = 60/118 (50.85%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 37  SSSRSTMVKQQQPPQEPLRCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRN 96
           ++ R+ + K  QPP+  L+CPRCDS+NTKFCY+NNY+L+QPR+FCKAC+RYWTRGG LRN
Sbjct: 60  AAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRN 119

Query: 97  VPVGGGCRKNKRLKRSTTTATATATTHSSSSPAPDSTSSSSTSCANNIFYGSDLNVPF 155
           VPVGGGCR+NK+ K   + +++++    S+S   ++TS ++TS   N+   ++   PF
Sbjct: 120 VPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMV-NATSPTNTS---NVQLQTNSQFPF 173

The following BLAST results are available for this feature:

BLAST of CmoCh18G003610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZA4	2.9e-32	62.71	Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana OX=3702 GN=DOF1.4 PE=2 SV...	[more]
Q84TE9	4.4e-28	54.70	Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV...	[more]
Q9ZV33	4.8e-27	50.85	Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV...	[more]
O24463	1.1e-26	60.87	Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1	[more]
Q9M1E6	5.4e-26	53.28	Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana OX=3702 GN=DOF3.2 PE=1 SV...	[more]

BLAST of CmoCh18G003610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRN9	9.3e-82	99.36	dof zinc finger protein DOF1.4-like OS=Cucurbita moschata OX=3662 GN=LOC11145684...	[more]
A0A6J1JVU5	1.1e-79	97.45	dof zinc finger protein DOF1.6-like OS=Cucurbita maxima OX=3661 GN=LOC111490162 ...	[more]
A0A6J1KHG1	6.3e-54	71.10	dof zinc finger protein DOF1.4-like OS=Cucurbita maxima OX=3661 GN=LOC111495781 ...	[more]
A0A5D3DSJ1	1.6e-52	68.13	Dof zinc finger protein DOF1.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B763	1.6e-52	68.13	dof zinc finger protein DOF1.4-like OS=Cucumis melo OX=3656 GN=LOC103486524 PE=4...	[more]

BLAST of CmoCh18G003610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954648.1	1.9e-81	99.36	dof zinc finger protein DOF1.4-like [Cucurbita moschata]	[more]
KAG6573279.1	7.3e-81	98.73	Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]
XP_022994442.1	2.4e-79	97.45	dof zinc finger protein DOF1.6-like [Cucurbita maxima]	[more]
XP_023542884.1	2.2e-77	96.18	dof zinc finger protein DOF1.6-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001732.1	1.3e-53	71.10	dof zinc finger protein DOF1.4-like [Cucurbita maxima]	[more]

BLAST of CmoCh18G003610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28310.1	2.1e-33	62.71	Dof-type zinc finger DNA-binding family protein	[more]
AT1G28310.2	2.1e-33	62.71	Dof-type zinc finger DNA-binding family protein	[more]
AT5G60200.1	3.1e-29	54.70	TARGET OF MONOPTEROS 6	[more]
AT2G28810.1	3.4e-28	50.85	Dof-type zinc finger DNA-binding family protein	[more]
AT2G28810.2	3.4e-28	50.85	Dof-type zinc finger DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 52..108 e-value: 8.9E-34 score: 115.4
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 56..92
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 54..108 score: 29.282604
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	PANTHER	PTHR31992	DOF ZINC FINGER PROTEIN DOF1.4-RELATED	coord: 10..143
None	No IPR available	PANTHER	PTHR31992:SF227	DOF ZINC FINGER PROTEIN DOF2.4-LIKE	coord: 10..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G003610.1	CmoCh18G003610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding