CmoCh18G003500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH167-like
Location	Cmo_Chr18: 2287019 .. 2288019 (-)
RNA-Seq Expression	CmoCh18G003500
Synteny	CmoCh18G003500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAACGTTTCCAAAATAATATATATGTGATTTCACCATTTTTTTTATTTTTTTATTTTTGAAGGTTTTCGAGCTCCCAAAGATGGCGAACAACTTCATCCATAGTCCATCATCAGCAAAGATCGACCGAAAGCTCATCGAGAGAAATAGAAGAGCAGAAATGAAGGCCCTTTTCTCGAGGCTCCATTCTCTTGTCCCGAATCAAAGCTCAATGGTTTCTTTTTCATTTTTTTTTTCTTACTGTTGTGTTTGGATGATAAGAGAATTTGTTTGAGTAACTCTGAGAAAATTGAGTTGTGTGCAGGAAGCTGAAACGACACTACTAGATCAGCTAGAAAATGCCACAAATTACATAAAACAATTGAAGGAGAACGTCGAGAAATTGAAAGAGAAGAAAGAGAAGCTCATGAAATTGGGAGAAGAAAGTGCAAGGAGTAGTGAAATTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCGCTGGAGTTTCTTTTGACCACTAGATCTGATTATCATTTGGTTTTAAAACAAGTCCTTCAACTGCTTCAAGAAAATGGAACTCAGATCGTCTATATCAATCACTCAACCGTCAAAGATCGGGTTTTTCACAAGATAATAGCTGAGGTAAGATAATGCATCAAATTTGTCTGATTAATTACATGAATCTATATATATTATCCTCTAATTAATTACATAAATCAACTGTATTATGACACTTGAAAACTAGATGGTGGGAGAAGGAACGACCTCCGAAAGCATTGAAGGTGAAAGGATCTGTGAGACGGTGAAGAAGTTTGTTTCACAATACAAAGATGTCCAATACAATGTTTAATGTTTTGTCTACAACATCGACTGATTTTGAAGATTTATGATATCGTTCTGGTGTGGTTGAATGCTTCAAAATCTTAATGTTCAAATCTTTCTCTAGTTTGCACTGTAACGTGACGTTTTAGGTGGTTTTCTCTATTCAATAAATT

mRNA sequence

AAAAAAAAAAAAAAAACGTTTCCAAAATAATATATATGTGATTTCACCATTTTTTTTATTTTTTTATTTTTGAAGGTTTTCGAGCTCCCAAAGATGGCGAACAACTTCATCCATAGTCCATCATCAGCAAAGATCGACCGAAAGCTCATCGAGAGAAATAGAAGAGCAGAAATGAAGGCCCTTTTCTCGAGGCTCCATTCTCTTGTCCCGAATCAAAGCTCAATGGAAGCTGAAACGACACTACTAGATCAGCTAGAAAATGCCACAAATTACATAAAACAATTGAAGGAGAACGTCGAGAAATTGAAAGAGAAGAAAGAGAAGCTCATGAAATTGGGAGAAGAAAGTGCAAGGAGTAGTGAAATTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCGCTGGAGTTTCTTTTGACCACTAGATCTGATTATCATTTGGTTTTAAAACAAGTCCTTCAACTGCTTCAAGAAAATGGAACTCAGATCGTCTATATCAATCACTCAACCGTCAAAGATCGGGTTTTTCACAAGATAATAGCTGAGATGGTGGGAGAAGGAACGACCTCCGAAAGCATTGAAGGTGAAAGGATCTGTGAGACGGTGAAGAAGTTTGTTTCACAATACAAAGATGTCCAATACAATGTTTAATGTTTTGTCTACAACATCGACTGATTTTGAAGATTTATGATATCGTTCTGGTGTGGTTGAATGCTTCAAAATCTTAATGTTCAAATCTTTCTCTAGTTTGCACTGTAACGTGACGTTTTAGGTGGTTTTCTCTATTCAATAAATT

Coding sequence (CDS)

ATGGCGAACAACTTCATCCATAGTCCATCATCAGCAAAGATCGACCGAAAGCTCATCGAGAGAAATAGAAGAGCAGAAATGAAGGCCCTTTTCTCGAGGCTCCATTCTCTTGTCCCGAATCAAAGCTCAATGGAAGCTGAAACGACACTACTAGATCAGCTAGAAAATGCCACAAATTACATAAAACAATTGAAGGAGAACGTCGAGAAATTGAAAGAGAAGAAAGAGAAGCTCATGAAATTGGGAGAAGAAAGTGCAAGGAGTAGTGAAATTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCGCTGGAGTTTCTTTTGACCACTAGATCTGATTATCATTTGGTTTTAAAACAAGTCCTTCAACTGCTTCAAGAAAATGGAACTCAGATCGTCTATATCAATCACTCAACCGTCAAAGATCGGGTTTTTCACAAGATAATAGCTGAGATGGTGGGAGAAGGAACGACCTCCGAAAGCATTGAAGGTGAAAGGATCTGTGAGACGGTGAAGAAGTTTGTTTCACAATACAAAGATGTCCAATACAATGTTTAA

Protein sequence

MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHLVLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVSQYKDVQYNV

Homology

[Close]

BLAST of CmoCh18G003500 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.4e-16
Identity = 60/154 (38.96%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 11  SAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVEK 70
           S  +DRK +E+NRR +MK+L+S L SL+P+ SS E   TL DQL+ A NYIK+L+ NVEK
Sbjct: 11  SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQVNVEK 70

Query: 71  LKEKK---------EKLMKLGEESARSS-EIKA-RLLVQVEAHQVGSSLEFLLTTRSDYH 130
            +E+K         EKL  +G  S  SS ++   R L ++E  + GS     L T  ++ 
Sbjct: 71  KRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHK 130

Query: 131 LVLKQVLQLL-QENGTQIVYINHSTVKDRVFHKI 153
            +  +++++L +E G +I +  +S V D VFH +
Sbjct: 131 FMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTL 163

[Close]

BLAST of CmoCh18G003500 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 58/176 (32.95%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 10  SSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVE 69
           SS +  R L E++RR  MK LFS L S V     +     L+DQ   AT+Y+ QLKENV 
Sbjct: 13  SSLREQRNLREKDRRMRMKHLFSILSSHVSPTRKLPV-PHLIDQ---ATSYMIQLKENVN 72

Query: 70  KLKEKKEKLM--KLGEESARSSEIKARLLVQVEAHQVGSSLEF-LLTTRSDYHLVLKQVL 129
            LKEKK  L+  +LG     S      LL ++      S++E  L+   +   ++L +++
Sbjct: 73  YLKEKKRTLLQGELGNLYEGSF-----LLPKLSIRSRDSTIEMNLIMDLNMKRVMLHELV 132

Query: 130 QLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVSQY 183
            + +E G Q++  N   + DR  + IIA+ +    +   I+  RI E V+K +  Y
Sbjct: 133 SIFEEEGAQVMSANLQNLNDRTTYTIIAQAI---ISRIGIDPSRIEERVRKIIYGY 176

[Close]

BLAST of CmoCh18G003500 vs. ExPASy Swiss-Prot
Match: Q9STJ7 (Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 13  KIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVEKLK 72
           K+  K IE+ RR EM +L++ L SL+P +  ++ + +  DQ++ A NYI  L+ N++ + 
Sbjct: 3   KLVHKEIEKRRRQEMASLYASLRSLLPLE-FIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 62

Query: 73  EKKEKLMKLGEESARSS------EIKARLLVQVEAHQVGSSLEFLLTTRSDYHLVLKQVL 132
            K++ L+ L   S RSS      EI   ++++     +   L  L T  S        VL
Sbjct: 63  SKRDDLVLLSGRSFRSSNEQEWNEISNHVVIRPCLVGIEIVLSILQTPFS-------SVL 122

Query: 133 QLLQENGTQIVYINHSTVKDRVFHKIIAEM 157
           Q+L+E+G  ++    S+V DR+ H + AE+
Sbjct: 123 QVLREHGLYVLGYICSSVNDRLIHTLQAEV 144

[Close]

BLAST of CmoCh18G003500 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-05
Identity = 55/174 (31.61%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 8   SPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKEN 67
           S SS +  R L E+ RR  MK LFS L S V     +     L+DQ   A +Y+ QLKE 
Sbjct: 11  SASSLREQRNLREKERRMRMKHLFSILSSHVSPTRRLPV-PQLIDQ---AVSYMIQLKEK 70

Query: 68  VEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEF-LLTTRSDYHLVLKQVL 127
           V  L E K ++  LG E    SE  + LL ++    + S +E  L+   +   ++L +++
Sbjct: 71  VNYLNEMKRRM--LGGEVKNRSE-GSSLLPKLSIRSLDSIIEMNLVMDLNMKGVMLHKLV 130

Query: 128 QLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 181
            + +E G Q++  N   + DR F+ IIA+ +        I+  RI E ++  +S
Sbjct: 131 SVFEEEGAQVMSANLQNLNDRTFYTIIAQAI---ICRIGIDPSRIEERLRDIIS 174

[Close]

BLAST of CmoCh18G003500 vs. ExPASy TrEMBL
Match: A0A6J1GT92 (uncharacterized protein LOC111457229 OS=Cucurbita moschata OX=3662 GN=LOC111457229 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.9e-93
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY
Sbjct: 22  MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 81

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL
Sbjct: 82  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 141

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS
Sbjct: 142 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 201

Query: 181 QYKDVQYNV 190
           QYKDVQYNV
Sbjct: 202 QYKDVQYNV 210

[Close]

BLAST of CmoCh18G003500 vs. ExPASy TrEMBL
Match: A0A6J1K2Y3 (transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490185 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.2e-80
Identity = 167/189 (88.36%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MANNFIH PSS KIDRKLIERNRRAEMKALFSRLHSLVPNQSS EAETTLLDQLENATNY
Sbjct: 22  MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 81

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEK+EKLM      +R  E KARLLVQVEAHQVGSSLE LLTT SDY  
Sbjct: 82  IKQLKENVEKLKEKREKLM-----GSREGETKARLLVQVEAHQVGSSLEVLLTTGSDYQF 141

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VL Q+LQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSES +GERICETVKKFVS
Sbjct: 142 VLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFVS 201

Query: 181 QYKDVQYNV 190
           QYKDVQYNV
Sbjct: 202 QYKDVQYNV 205

[Close]

BLAST of CmoCh18G003500 vs. ExPASy TrEMBL
Match: A0A6J1K483 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111489936 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.3e-68
Identity = 144/189 (76.19%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MA+NFI+ PSSAK D+++IERNRR EMKAL S+LHSLVPNQ+S E ETTL DQLENATNY
Sbjct: 1   MADNFIYCPSSAKTDQEIIERNRRDEMKALLSQLHSLVPNQNSTEGETTLPDQLENATNY 60

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEK+EKLM LGE+S  +SE KAR++VQVEAH VGSSLE LLTT SDYHL
Sbjct: 61  IKQLKENVEKLKEKREKLMGLGEKSTITSENKARVIVQVEAHLVGSSLEILLTTGSDYHL 120

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VL+Q++QLLQENGT+IV IN STV +R FHKIIA+M GEGTT E  +GERICE VKKFVS
Sbjct: 121 VLRQIIQLLQENGTEIVDINQSTVANRAFHKIIAQMAGEGTTLEGAKGERICERVKKFVS 180

Query: 181 QYKDVQYNV 190
            YKD QY V
Sbjct: 181 HYKDDQYTV 189

[Close]

BLAST of CmoCh18G003500 vs. ExPASy TrEMBL
Match: A0A6J1JZ96 (transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490190 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.7e-61
Identity = 136/184 (73.91%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MA+NFIH  +S K DRK I      EMKALFS LHSLVPNQ S E ETTL  Q+ENATNY
Sbjct: 1   MADNFIHYSTSTKTDRKTI------EMKALFSTLHSLVPNQISTEGETTLPVQIENATNY 60

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEK+EKL+      +R  EIKARLLVQVEAHQVGSSLE LLTT SDY L
Sbjct: 61  IKQLKENVEKLKEKREKLI-----GSREGEIKARLLVQVEAHQVGSSLEVLLTTGSDYLL 120

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VL Q+LQLLQENGTQI++INHST+ +RVFHKI+A+MVGEG +SE ++GERICETVKKFVS
Sbjct: 121 VLNQILQLLQENGTQIIHINHSTIINRVFHKIVAQMVGEGMSSEGVDGERICETVKKFVS 173

Query: 181 QYKD 185
           QYKD
Sbjct: 181 QYKD 173

[Close]

BLAST of CmoCh18G003500 vs. ExPASy TrEMBL
Match: A0A6J1GVE3 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111457231 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.7e-61
Identity = 136/186 (73.12%), Postives = 151/186 (81.18%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MANN IH+PS ++ D KLIE+NR  EMKALFSRLHSLVPN+S  E ET L DQ+ENATNY
Sbjct: 1   MANNSIHNPSVSRSDLKLIEKNRGEEMKALFSRLHSLVPNKS--EGETMLSDQIENATNY 60

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           I QLKENVEKLKEKKEKLM+LGEES          +VQVEA  VGSSLEFLLTTR DYH 
Sbjct: 61  INQLKENVEKLKEKKEKLMRLGEEST---------MVQVEARIVGSSLEFLLTTRFDYHS 120

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           +L+Q+LQLLQENGT+IV+IN STV DR+FHKII +MVGEG  SE  EGERICE VKKFVS
Sbjct: 121 ILRQILQLLQENGTEIVHINRSTVTDRIFHKIIVQMVGEGMNSERAEGERICEIVKKFVS 175

Query: 181 QYKDVQ 187
           QYKD Q
Sbjct: 181 QYKDGQ 175

[Close]

BLAST of CmoCh18G003500 vs. NCBI nr
Match: XP_022955188.1 (uncharacterized protein LOC111457229 [Cucurbita moschata])

HSP 1 Score: 351.7 bits (901), Expect = 4.0e-93
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY
Sbjct: 22  MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 81

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL
Sbjct: 82  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 141

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS
Sbjct: 142 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 201

Query: 181 QYKDVQYNV 190
           QYKDVQYNV
Sbjct: 202 QYKDVQYNV 210

[Close]

BLAST of CmoCh18G003500 vs. NCBI nr
Match: KAG6573268.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344.7 bits (883), Expect = 4.9e-91
Identity = 186/189 (98.41%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MANNFIH PSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSS EAETTLLDQLENATNY
Sbjct: 22  MANNFIHCPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 81

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTT SDYHL
Sbjct: 82  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTGSDYHL 141

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS
Sbjct: 142 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 201

Query: 181 QYKDVQYNV 190
           QYKDVQYNV
Sbjct: 202 QYKDVQYNV 210

[Close]

BLAST of CmoCh18G003500 vs. NCBI nr
Match: XP_023542777.1 (uncharacterized protein LOC111802586 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.0 bits (868), Expect = 2.7e-89
Identity = 182/189 (96.30%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MANNFIH PSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSS EAETTLLDQLENATNY
Sbjct: 1   MANNFIHCPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 60

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEKKEKLMKLGEESAR SEIKARLLVQVEAHQVGSSLEFLLTT S+YHL
Sbjct: 61  IKQLKENVEKLKEKKEKLMKLGEESARRSEIKARLLVQVEAHQVGSSLEFLLTTGSEYHL 120

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VLKQ+LQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSES EGERICETVKKFVS
Sbjct: 121 VLKQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTEGERICETVKKFVS 180

Query: 181 QYKDVQYNV 190
           QYKDVQYNV
Sbjct: 181 QYKDVQYNV 189

[Close]

BLAST of CmoCh18G003500 vs. NCBI nr
Match: KAG7012436.1 (Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.4 bits (825), Expect = 2.6e-84
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 14  IDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVEKLKE 73
           IDRKLIERNRRAEMKALFSRLHSLVPNQSS EAETTLLDQLENATNYIKQLKENVEKLKE
Sbjct: 168 IDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENVEKLKE 227

Query: 74  KKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHLVLKQVLQLLQENG 133
           KKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHLVLKQVLQLL+ENG
Sbjct: 228 KKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHLVLKQVLQLLEENG 287

Query: 134 TQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVSQYKDVQYNV 190
           TQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVSQYKDVQYNV
Sbjct: 288 TQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVSQYKDVQYNV 343

[Close]

BLAST of CmoCh18G003500 vs. NCBI nr
Match: XP_022994474.1 (transcription factor bHLH167-like [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 167/189 (88.36%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 60
           MANNFIH PSS KIDRKLIERNRRAEMKALFSRLHSLVPNQSS EAETTLLDQLENATNY
Sbjct: 22  MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 81

Query: 61  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 120
           IKQLKENVEKLKEK+EKLM      +R  E KARLLVQVEAHQVGSSLE LLTT SDY  
Sbjct: 82  IKQLKENVEKLKEKREKLM-----GSREGETKARLLVQVEAHQVGSSLEVLLTTGSDYQF 141

Query: 121 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 180
           VL Q+LQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSES +GERICETVKKFVS
Sbjct: 142 VLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFVS 201

Query: 181 QYKDVQYNV 190
           QYKDVQYNV
Sbjct: 202 QYKDVQYNV 205

[Close]

BLAST of CmoCh18G003500 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-17
Identity = 60/154 (38.96%), Postives = 92/154 (59.74%), Query Frame = 0


Query: 11  SAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVEK 70
           S  +DRK +E+NRR +MK+L+S L SL+P+ SS E   TL DQL+ A NYIK+L+ NVEK
Sbjct: 11  SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQVNVEK 70

Query: 71  LKEKK---------EKLMKLGEESARSS-EIKA-RLLVQVEAHQVGSSLEFLLTTRSDYH 130
            +E+K         EKL  +G  S  SS ++   R L ++E  + GS     L T  ++ 
Sbjct: 71  KRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHK 130

Query: 131 LVLKQVLQLL-QENGTQIVYINHSTVKDRVFHKI 153
            +  +++++L +E G +I +  +S V D VFH +
Sbjct: 131 FMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTL 163

[Close]

BLAST of CmoCh18G003500 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-08
Identity = 58/176 (32.95%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 10  SSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVE 69
           SS +  R L E++RR  MK LFS L S V     +     L+DQ   AT+Y+ QLKENV 
Sbjct: 13  SSLREQRNLREKDRRMRMKHLFSILSSHVSPTRKLPV-PHLIDQ---ATSYMIQLKENVN 72

Query: 70  KLKEKKEKLM--KLGEESARSSEIKARLLVQVEAHQVGSSLEF-LLTTRSDYHLVLKQVL 129
            LKEKK  L+  +LG     S      LL ++      S++E  L+   +   ++L +++
Sbjct: 73  YLKEKKRTLLQGELGNLYEGSF-----LLPKLSIRSRDSTIEMNLIMDLNMKRVMLHELV 132

Query: 130 QLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVSQY 183
            + +E G Q++  N   + DR  + IIA+ +    +   I+  RI E V+K +  Y
Sbjct: 133 SIFEEEGAQVMSANLQNLNDRTTYTIIAQAI---ISRIGIDPSRIEERVRKIIYGY 176

[Close]

BLAST of CmoCh18G003500 vs. TAIR 10
Match: AT4G25400.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-07
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 13  KIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKENVEKLK 72
           K+  K IE+ RR EM +L++ L SL+P +  ++ + +  DQ++ A NYI  L+ N++ + 
Sbjct: 3   KLVHKEIEKRRRQEMASLYASLRSLLPLE-FIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 62

Query: 73  EKKEKLMKLGEESARSS------EIKARLLVQVEAHQVGSSLEFLLTTRSDYHLVLKQVL 132
            K++ L+ L   S RSS      EI   ++++     +   L  L T  S        VL
Sbjct: 63  SKRDDLVLLSGRSFRSSNEQEWNEISNHVVIRPCLVGIEIVLSILQTPFS-------SVL 122

Query: 133 QLLQENGTQIVYINHSTVKDRVFHKIIAEM 157
           Q+L+E+G  ++    S+V DR+ H + AE+
Sbjct: 123 QVLREHGLYVLGYICSSVNDRLIHTLQAEV 144

[Close]

BLAST of CmoCh18G003500 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-06
Identity = 55/174 (31.61%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 8   SPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYIKQLKEN 67
           S SS +  R L E+ RR  MK LFS L S V     +     L+DQ   A +Y+ QLKE 
Sbjct: 11  SASSLREQRNLREKERRMRMKHLFSILSSHVSPTRRLPV-PQLIDQ---AVSYMIQLKEK 70

Query: 68  VEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEF-LLTTRSDYHLVLKQVL 127
           V  L E K ++  LG E    SE  + LL ++    + S +E  L+   +   ++L +++
Sbjct: 71  VNYLNEMKRRM--LGGEVKNRSE-GSSLLPKLSIRSLDSIIEMNLVMDLNMKGVMLHKLV 130

Query: 128 QLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 181
            + +E G Q++  N   + DR F+ IIA+ +        I+  RI E ++  +S
Sbjct: 131 SVFEEEGAQVMSANLQNLNDRTFYTIIAQAI---ICRIGIDPSRIEERLRDIIS 174

[Close]

BLAST of CmoCh18G003500 vs. TAIR 10
Match: AT1G62975.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.7e-04
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 2   ANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNYI 61
           AN       S K+  + IER RR E+ +LF RL +L+P Q  ++ + +  D +  A NYI
Sbjct: 64  ANKNDDDRESKKMKHRDIERQRRQEVSSLFKRLRTLLPFQ-YIQGKRSTSDHIVQAVNYI 123

Query: 62  KQLKENVEKLKEKKEKLMKL 82
           K L+  +++L EK+ ++ K+
Sbjct: 124 KDLQIKIKELNEKRNRVKKV 142

The following BLAST results are available for this feature:

BLAST of CmoCh18G003500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	5.4e-16	38.96	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
F4I4E1	1.0e-06	32.95	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]
Q9STJ7	1.7e-06	31.33	Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=...	[more]
Q9XIJ1	2.5e-05	31.61	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]

BLAST of CmoCh18G003500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GT92	1.9e-93	100.00	uncharacterized protein LOC111457229 OS=Cucurbita moschata OX=3662 GN=LOC1114572...	[more]
A0A6J1K2Y3	7.2e-80	88.36	transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490185 PE...	[more]
A0A6J1K483	6.3e-68	76.19	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111489936 PE...	[more]
A0A6J1JZ96	5.7e-61	73.91	transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490190 PE...	[more]
A0A6J1GVE3	5.7e-61	73.12	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111457231 ...	[more]

BLAST of CmoCh18G003500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955188.1	4.0e-93	100.00	uncharacterized protein LOC111457229 [Cucurbita moschata]	[more]
KAG6573268.1	4.9e-91	98.41	Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma...	[more]
XP_023542777.1	2.7e-89	96.30	uncharacterized protein LOC111802586 [Cucurbita pepo subsp. pepo]	[more]
KAG7012436.1	2.6e-84	98.86	Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022994474.1	1.5e-79	88.36	transcription factor bHLH167-like [Cucurbita maxima]	[more]

BLAST of CmoCh18G003500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	3.8e-17	38.96	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	7.2e-08	32.95	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25400.1	1.2e-07	31.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	1.8e-06	31.61	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G62975.1	3.7e-04	35.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..84
None	No IPR available	PANTHER	PTHR13935:SF90	TRANSCRIPTION FACTOR BHLH162	coord: 7..180
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 17..70 e-value: 8.5E-5 score: 31.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 16..65 e-value: 1.1E-7 score: 31.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 11..64 score: 12.099659
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 14..91 e-value: 4.0E-12 score: 48.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 11..80
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 7..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G003500.1	CmoCh18G003500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity