CmoCh18G003050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ankyrin repeat-containing protein
Location	Cmo_Chr18: 1966047 .. 1967722 (+)
RNA-Seq Expression	CmoCh18G003050
Synteny	CmoCh18G003050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGATGAGCAGAGCTTATCGATAGTGAGGTCGATGACGATGATGAAAGCCATCGATACTTCGATGCCAATGACTTCCATGTCGATGAAACCCAAAACGGCGGTATACAATCTAATGTCATTTCAACTTTCAGGACGGAAATGGAGTATTTTATTTTTGACATAGGTATCTTTATCGAATTAGATGAAAGTCCCACATGTCTATTGGTATGAGGCTTGTTGGAAAGTCTAAACAAAGTTATGAGAGGTTATGCTCAGAGTGAACAATATCATGATGGAGAGTCGTAGAGTCGTGTTCAATTTTTTTTGCATTAAATTATGGTTTGTTTGTAGGTCCAATAAAGGTTAGGTTATATGAAGCTGCTTTAAAGAGTGATTGGAAGACAGCCAAATCCATATTTGACTCATATTCATCAACTATTACTATGAAGATTACTGATGGAGAGGCCACTGCTCTTCATATTGCTGCGGTTGCAAAGCTGCTTAAAGGATTGATTGCTACCATTTCCTCTCACTGTTACGATTTCGTTTTTCTTCAAATTCTGTTTCATTCTTGTACTCTCCGTAATAATTATGCTATTGTCTACTTTGAATATAAGCTATCGTGGCTTTGTTTTGGACTTTCTCAAAAGACCTCATACCAACAGAGATAGTATTTATTAATTATAAATTCATGATCATTCTCTAAATTAGCTTATGTGTGACTCTCTCCCAGCAATCCTCAACAATCCTCCCCTCGAACAAAGTACAACATAGAGCCTCTCTTGAGGCCTATGGAGCCCTCAAACAACCTCTCTTAGTCAAGCCTCGACTCTTTCTCTAGAACCTTCGAACAAAGTACACTATGTTAGGAATCATGACTCTTCACATTGATATGATATTGTCCACTTTGAGTATAAGCTCTCGTGGCTTTGTTTTGAGCTTTCCAAAAGGCCTCGTACTAATAGAGATAATATTACTTGATTATAAACCATGATCATTCCCTAAATTAGCAGATGCGTGACTTTCATCCAACCATTCTAACCTACTCATCATATATTTCTTACCCTTTCTTTCTTCTCGATATGGTAAAAAAAAAAAGACTATTTTTCTTCGTACGAGTGGAGAGAAAAAGCATTTCTCTATTACTTCTCACGTGGTGCTCCAAAATTGAAATAATGAAGTAATAAAAACTAATTATAGCCGTAAAAAAACAGAGCTTAGCTTAGCTTTTGGAAAACATCCATAAACTCTCGTAATACATCAACTTTGTTTTCTTTTATATATATATATATATAAACACATGATTATATCTTTGTGTGCTTCCTAGGCTTTCCAAGAATTTACAACAAAGCTCTCATCCAGACATTAGCCCATCAAATTGTGGAACTTGTATGGAACTTTGTTGTCAAAGAACATACAAAACAAGAGCAATATGAGTTTATAAAACACCCCACAAGGTTATTGCATGATGCTGCAAGAGCTGGAAATGTTGAGTTCTTGATAATACTATATGTTCCTGATATGCTATGGAAATGTGATGATGAAAGCAAAAGCATATTTCATATAGCAGTTGAAAATCGACAAAAAAGTGTATTCAGTTTAATATATGAGATCGGAGGCCTCAAGGATTTTCTTGCCAACTTCCACGATAAACAAAAAAATTTAACATGCTACATTTTGCTGGATTACTAG

mRNA sequence

ATGAGAGATGAGCAGAGCTTATCGATAGTGAGGTCGATGACGATGATGAAAGCCATCGATACTTCGATGCCAATGACTTCCATGTCGATGAAACCCAAAACGGCGGTATACAATCTAATGTCATTTCAACTTTCAGGACGGAAATGGACTGCTTTAAAGAGTGATTGGAAGACAGCCAAATCCATATTTGACTCATATTCATCAACTATTACTATGAAGATTACTGATGGAGAGGCCACTGCTCTTCATATTGCTGCGACATTAGCCCATCAAATTGTGGAACTTGTATGGAACTTTGTTGTCAAAGAACATACAAAACAAGAGCAATATGAGTTTATAAAACACCCCACAAGGTTATTGCATGATGCTGCAAGAGCTGGAAATGTTGAGTTCTTGATAATACTATATGTTCCTGATATGCTATGGAAATGTGATGATGAAAGCAAAAGCATATTTCATATAGCAGTTGAAAATCGACAAAAAAGTGTATTCAGTTTAATATATGAGATCGGAGGCCTCAAGGATTTTCTTGCCAACTTCCACGATAAACAAAAAAATTTAACATGCTACATTTTGCTGGATTACTAG

Coding sequence (CDS)

ATGAGAGATGAGCAGAGCTTATCGATAGTGAGGTCGATGACGATGATGAAAGCCATCGATACTTCGATGCCAATGACTTCCATGTCGATGAAACCCAAAACGGCGGTATACAATCTAATGTCATTTCAACTTTCAGGACGGAAATGGACTGCTTTAAAGAGTGATTGGAAGACAGCCAAATCCATATTTGACTCATATTCATCAACTATTACTATGAAGATTACTGATGGAGAGGCCACTGCTCTTCATATTGCTGCGACATTAGCCCATCAAATTGTGGAACTTGTATGGAACTTTGTTGTCAAAGAACATACAAAACAAGAGCAATATGAGTTTATAAAACACCCCACAAGGTTATTGCATGATGCTGCAAGAGCTGGAAATGTTGAGTTCTTGATAATACTATATGTTCCTGATATGCTATGGAAATGTGATGATGAAAGCAAAAGCATATTTCATATAGCAGTTGAAAATCGACAAAAAAGTGTATTCAGTTTAATATATGAGATCGGAGGCCTCAAGGATTTTCTTGCCAACTTCCACGATAAACAAAAAAATTTAACATGCTACATTTTGCTGGATTACTAG

Protein sequence

MRDEQSLSIVRSMTMMKAIDTSMPMTSMSMKPKTAVYNLMSFQLSGRKWTALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILYVPDMLWKCDDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQKNLTCYILLDY

Homology

[Close]

BLAST of CmoCh18G003050 vs. ExPASy TrEMBL
Match: A0A6J1GRE6 (ankyrin repeat-containing protein At5g02620-like OS=Cucurbita moschata OX=3662 GN=LOC111456837 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.4e-38
Identity = 79/102 (77.45%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQIVE +WNFV+ + T  E +EFIKHPTRLLHDAAR GNVEFLIIL    P++LWKC
Sbjct: 285 TLAHQIVERLWNFVLGKSTMLELHEFIKHPTRLLHDAARVGNVEFLIILIRSYPNLLWKC 344

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQKN 187
           +DE KSIFH+AVENRQ+SVF+LIYE+GGLKDFLANFHDKQKN
Sbjct: 345 EDEGKSIFHVAVENRQESVFNLIYELGGLKDFLANFHDKQKN 386

[Close]

BLAST of CmoCh18G003050 vs. ExPASy TrEMBL
Match: A0A6J1GRE6 (ankyrin repeat-containing protein At5g02620-like OS=Cucurbita moschata OX=3662 GN=LOC111456837 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWKTAKSIFD  SS ITMKITD + TALHIAA   H  +  V N V
Sbjct: 80  ALKGDWKTAKSIFDIDSSAITMKITDADETALHIAAAAKH--IHFVENLV 127

HSP 2 Score: 163.7 bits (413), Expect = 7.8e-37
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQ VE +WNFVVKE TK+E Y FIK+P+RLLHDAAR GN EFLIIL    PD+LWK 
Sbjct: 348 TLAHQTVERLWNFVVKELTKRELYSFIKNPSRLLHDAARVGNAEFLIILIRSYPDLLWKV 407

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQK 186
           DD+ KSIFHIAVENRQ+SVFSLIYEIGGLKDFLANFHD++K
Sbjct: 408 DDDDKSIFHIAVENRQESVFSLIYEIGGLKDFLANFHDRKK 448

[Close]

BLAST of CmoCh18G003050 vs. ExPASy TrEMBL
Match: A0A6J1GTF5 (ankyrin repeat-containing protein ITN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456952 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWK AKSIFD  SSTITMKITD + TALHIAA   H  +  V N V
Sbjct: 143 ALKGDWKIAKSIFDIDSSTITMKITDADETALHIAAAAKH--IHFVENLV 190

HSP 2 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 88  LAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKCD 147
           LAHQ VE +WNFVVKE TK+E Y FIK+P+RLLHDAAR GN EFLIIL    PD+LWK D
Sbjct: 349 LAHQTVERLWNFVVKELTKRELYSFIKNPSRLLHDAARVGNAEFLIILIRSYPDLLWKVD 408

Query: 148 DESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQKNL 188
           D+ KSIFHIAVENRQ+SVFSLIYEIGGLKDFLANFHD++K L
Sbjct: 409 DDDKSIFHIAVENRQESVFSLIYEIGGLKDFLANFHDRKKQL 450

[Close]

BLAST of CmoCh18G003050 vs. ExPASy TrEMBL
Match: A0A6J1JYW0 (ankyrin repeat-containing protein At5g02620-like OS=Cucurbita maxima OX=3661 GN=LOC111490095 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWK AKSIFD  SSTITMKITD + TALHIAA   H  +  V N V
Sbjct: 143 ALKGDWKIAKSIFDIDSSTITMKITDADETALHIAAAAKH--IHFVENLV 190

HSP 2 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 75/102 (73.53%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQIVE +W FVV+E TKQE  +FIK P+RLLHDAA+ GN EFLIIL    PD+LWK 
Sbjct: 370 TLAHQIVERLWKFVVQELTKQELSKFIKTPSRLLHDAAKVGNAEFLIILIRSYPDLLWKV 429

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQKN 187
           D+++KSIFHIAVENRQ+SVFSLIYEI GLKDF+AN+HDK+KN
Sbjct: 430 DEDNKSIFHIAVENRQESVFSLIYEIAGLKDFIANYHDKEKN 471

[Close]

BLAST of CmoCh18G003050 vs. ExPASy TrEMBL
Match: A0A6J1C944 (ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LOC111008583 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 32/50 (64.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWKTAKSIF   SS +TMKITD E TALHIAA   H  +  V N V
Sbjct: 162 ALKGDWKTAKSIFAINSSAVTMKITDAEETALHIAAAAKH--ISFVENLV 209

HSP 2 Score: 147.9 bits (372), Expect = 4.4e-32
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQ VE +WNFVVK  +K + Y FIK P+RLLH+AA AGN EFLIIL    P+++WK 
Sbjct: 345 TLAHQTVERIWNFVVKNLSKTDLYLFIKTPSRLLHNAASAGNAEFLIILISSYPELIWKV 404

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQKN 187
           DD+ KSIFH+AVENRQ+SVFSLIYEIGGL+DFLAN++D +KN
Sbjct: 405 DDDDKSIFHVAVENRQESVFSLIYEIGGLRDFLANYYDHKKN 446

[Close]

BLAST of CmoCh18G003050 vs. NCBI nr
Match: XP_022954631.1 (ankyrin repeat-containing protein At5g02620-like [Cucurbita moschata])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-37
Identity = 79/102 (77.45%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQIVE +WNFV+ + T  E +EFIKHPTRLLHDAAR GNVEFLIIL    P++LWKC
Sbjct: 285 TLAHQIVERLWNFVLGKSTMLELHEFIKHPTRLLHDAARVGNVEFLIILIRSYPNLLWKC 344

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQKN 187
           +DE KSIFH+AVENRQ+SVF+LIYE+GGLKDFLANFHDKQKN
Sbjct: 345 EDEGKSIFHVAVENRQESVFNLIYELGGLKDFLANFHDKQKN 386

[Close]

BLAST of CmoCh18G003050 vs. NCBI nr
Match: XP_022954631.1 (ankyrin repeat-containing protein At5g02620-like [Cucurbita moschata])

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-05
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWKTAKSIFD  SS ITMKITD + TALHIAA   H  +  V N V
Sbjct: 80  ALKGDWKTAKSIFDIDSSAITMKITDADETALHIAAAAKH--IHFVENLV 127

HSP 2 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQ VE +WNFVVKE TK+E Y FIK+P+RLLHDAAR GN EFLIIL    PD+LWK 
Sbjct: 352 TLAHQTVERLWNFVVKELTKRELYSFIKNPSRLLHDAARVGNAEFLIILIRSYPDLLWKV 411

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQK 186
           DD+ KSIFHIAVENRQ+SVFSLIYEIGGLKDFLANFHD++K
Sbjct: 412 DDDDKSIFHIAVENRQESVFSLIYEIGGLKDFLANFHDRKK 452

[Close]

BLAST of CmoCh18G003050 vs. NCBI nr
Match: XP_023542596.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-05
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWK AKSIFD  SSTITMKITD + TALHIAA   H  +  V N V
Sbjct: 147 ALKGDWKIAKSIFDIDSSTITMKITDADETALHIAAAAKH--IHFVENLV 194

HSP 2 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQ VE +WNFVVKE TK+E Y FIK+P+RLLHDAAR GN EFLIIL    PD+LWK 
Sbjct: 352 TLAHQTVERLWNFVVKELTKRELYSFIKNPSRLLHDAARVGNAEFLIILIRSYPDLLWKV 411

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQK 186
           DD+ KSIFHIAVENRQ+SVFSLIYEIGGLKDFLANFHD++K
Sbjct: 412 DDDDKSIFHIAVENRQESVFSLIYEIGGLKDFLANFHDRKK 452

[Close]

BLAST of CmoCh18G003050 vs. NCBI nr
Match: KAG6573174.1 (Ankyrin repeat-containing protein ITN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-05
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWK AKSIFD  SSTITMKITD + TALHIAA   H  +  V N V
Sbjct: 147 ALKGDWKIAKSIFDIDSSTITMKITDADETALHIAAAAKH--IHFVENLV 194

HSP 2 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQ VE +WNFVVKE TK+E Y FIK+P+RLLHDAAR GN EFLIIL    PD+LWK 
Sbjct: 348 TLAHQTVERLWNFVVKELTKRELYSFIKNPSRLLHDAARVGNAEFLIILIRSYPDLLWKV 407

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQK 186
           DD+ KSIFHIAVENRQ+SVFSLIYEIGGLKDFLANFHD++K
Sbjct: 408 DDDDKSIFHIAVENRQESVFSLIYEIGGLKDFLANFHDRKK 448

[Close]

BLAST of CmoCh18G003050 vs. NCBI nr
Match: XP_022954800.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-05
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 51  ALKSDWKTAKSIFDSYSSTITMKITDGEATALHIAATLAHQIVELVWNFV 101
           ALK DWK AKSIFD  SSTITMKITD + TALHIAA   H  +  V N V
Sbjct: 143 ALKGDWKIAKSIFDIDSSTITMKITDADETALHIAAAAKH--IHFVENLV 190

HSP 2 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAHQIVE +WNFV+ + T  E +EFIKHPTRLLHDAAR GNVEFLIIL    P++LWKC
Sbjct: 285 TLAHQIVERLWNFVLGKSTMLELHEFIKHPTRLLHDAARVGNVEFLIILLRSYPNLLWKC 344

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQK 186
           +DE KSIFH+AVENRQ+SVF+LIYEIGGLKD LANFHDKQK
Sbjct: 345 EDEGKSIFHVAVENRQESVFNLIYEIGGLKDILANFHDKQK 385

[Close]

BLAST of CmoCh18G003050 vs. TAIR 10
Match: AT5G35810.1 (Ankyrin repeat family protein )

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-20
Identity = 44/102 (43.14%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 87  TLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFLIILY--VPDMLWKC 146
           TLAH +VE +W+FV+K    +E  +F+     LL DAA++GN+E L+IL    PD++W  
Sbjct: 3   TLAHMVVEELWSFVIKLPV-EEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWTV 62

Query: 147 DDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANFHDKQKN 187
           D +++S+FHIA  NR + +F+ IYE+G +KD +A + +K+ N
Sbjct: 63  DHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESN 103

[Close]

BLAST of CmoCh18G003050 vs. TAIR 10
Match: AT3G54070.1 (Ankyrin repeat family protein )

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-14
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 119 LLHDAARAGNVEFLIILYVP--DMLWKCDDESKSIFHIAVENRQKSVFSLIYEIGGLKDF 178
           LL DAA  GNVE L+IL     D+LW  D+ ++++FH+A   R +++FSLIYE+GG+KD 
Sbjct: 258 LLFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIKDL 317

Query: 179 LANFHDKQKNLT 189
           +A++ +KQ   T
Sbjct: 318 IASYKEKQSKDT 329

[Close]

BLAST of CmoCh18G003050 vs. TAIR 10
Match: AT3G18670.1 (Ankyrin repeat family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-06
Identity = 32/115 (27.83%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 82  LHIAATLAHQIVELVWNFVVKEHTKQEQYEFIKHPTRLLHDAARAGNVEFL--IILYVPD 141
           L +    A +I++ +   + K    Q++   +    + L  A   G VE++  ++ + PD
Sbjct: 258 LKLGHAQAKEILDCICQEIPKFDAAQQKNAGL---NQALFKAVENGIVEYIEEMMRHYPD 317

Query: 142 MLWKCDDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLAN----FHDKQKNLTCY 191
           ++W  +    +IF  AV  RQ+ +FSLIY IG  K+ LA     FH+   +   Y
Sbjct: 318 IVWSKNSSGLNIFFYAVSQRQEKIFSLIYNIGAKKNILATNWDIFHNNMLHHAAY 369

[Close]

BLAST of CmoCh18G003050 vs. TAIR 10
Match: AT5G04680.1 (Ankyrin repeat family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.8e-04
Identity = 26/67 (38.81%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 123 AARAGNVEFLI--ILYVPDMLWKCDDESKS-IFHIAVENRQKSVFSLIYEIGGLKDFLAN 182
           A R GNV+FL+  I    ++LW     S S +F +AVE RQ+ VF+L+Y +   K  L  
Sbjct: 382 AVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFNLLYGLDDRKYLLLA 441

Query: 183 FHDKQKN 187
             D   N
Sbjct: 442 DKDSDGN 448

[Close]

BLAST of CmoCh18G003050 vs. TAIR 10
Match: AT5G04690.1 (Ankyrin repeat family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.8e-04
Identity = 24/71 (33.80%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 123 AARAGNVEFLI--ILYVPDMLWKCDDESKSIFHIAVENRQKSVFSLIYEIGGLKDFLANF 182
           A R GNV+FL+  I    ++LW     + ++F+ AV+ RQ+ VFSL+Y +G  K      
Sbjct: 327 AVRYGNVDFLVEMIKNNSELLWSTG--TSTLFNTAVQVRQEKVFSLLYGLGDRKYLFLAD 386

Query: 183 HDKQKNLTCYI 192
            D   N   ++
Sbjct: 387 KDSDGNSVLHL 395

The following BLAST results are available for this feature:

BLAST of CmoCh18G003050 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G003050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRE6	5.4e-38	77.45	ankyrin repeat-containing protein At5g02620-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1GRE6	2.1e-05	66.00	ankyrin repeat-containing protein At5g02620-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1GTF5	2.7e-05	66.00	ankyrin repeat-containing protein ITN1-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JYW0	2.7e-05	66.00	ankyrin repeat-containing protein At5g02620-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1C944	7.8e-05	64.00	ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LO...	[more]

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BLAST of CmoCh18G003050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954631.1	1.1e-37	77.45	ankyrin repeat-containing protein At5g02620-like [Cucurbita moschata]	[more]
XP_022954631.1	4.3e-05	66.00	ankyrin repeat-containing protein At5g02620-like [Cucurbita moschata]	[more]
XP_023542596.1	5.6e-05	66.00	ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6573174.1	5.6e-05	66.00	Ankyrin repeat-containing protein ITN1, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022954800.1	5.6e-05	66.00	ankyrin repeat-containing protein ITN1-like [Cucurbita moschata]	[more]

Pages

BLAST of CmoCh18G003050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35810.1	6.5e-20	43.14	Ankyrin repeat family protein	[more]
AT3G54070.1	4.1e-14	47.22	Ankyrin repeat family protein	[more]
AT3G18670.1	1.8e-06	27.83	Ankyrin repeat family protein	[more]
AT5G04680.1	3.8e-04	38.81	Ankyrin repeat family protein	[more]
AT5G04690.1	3.8e-04	33.80	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24177	CASKIN	coord: 89..186
None	No IPR available	PANTHER	PTHR24177:SF303	PROTEIN ACCELERATED CELL DEATH 6-LIKE	coord: 89..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G003050.1	CmoCh18G003050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0140013	meiotic nuclear division
cellular_component	GO:0016021	integral component of membrane