CmoCh18G002230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G002230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	thylakoid lumenal 17.9 kDa protein, chloroplastic
Location	Cmo_Chr18: 1456974 .. 1458920 (-)
RNA-Seq Expression	CmoCh18G002230
Synteny	CmoCh18G002230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGAACGAAACATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAAGAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCTCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTCTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGTACGCTCTCAGTTCTTCTCGTTAATCTCTGCATTTCTTCTGTAATTTCTCTTGATTGTCTCGCTCACAGCATGAACTGTCGCCAATTTCTTTCTGCCCTAATTTTGCATTTGTTTTCTTAACTGAATCATTGATAATTTAGCTAAATGTTGTCTTGACATTGCAGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCTCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGGTTTTAGTTCGCTTAAAGCTCTGTATCACTTGCTTGAATGTTGTTTTACGTTAGTGGCTTCTTATAGTGTTGTCTTTCATGATTCTGCTCCACTTCGTTTATTTGCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTAATTGAACTGAAATTATCAATAGTTTATTTGAAATTTACATTACAAATTGATATACCTCCTTATGTTCTAATTGAACTGCTGAGATAGAGATGAGAATGGACTCTGTTTATTAGTGAGCCAACCCATCTGGCTTGTTCTTTTGAATTTCGTAGTGTTTTGACATAGTGACAGAAGTGAATCCTTGTTTTGATCCCGAAACACTTAAGAACGTAGTTAATAAGTCCTTAAACTTTCAAGGTGACATCTCGTAAGTTTCTAAACCGTAAAAAGTGTCTAATGAATGGAACGGTTCACGTTTCAAGTTCGTGTTTAAACTTTAAAAGTCTCGAAAATCATGTACATTTGGCACAAAAGCGAAAGTTTGTTTGTTACCTTTTAAATACAAAATCACTTTTAGTTCATAAGTGTGAGATCCCACGTCGGTTGGAGAGGGGAATGAAGCATTCCTTATTATAAGACTGTGGACCTCTTCCTAGTAGACACATTTTATAATTGTGAGGTTGACGGCAATATGTAACGGGTCATAGCGGATAATATCTGCTAGCAGTGGGCTTGAGTTGTTACAAATGGTATCAGAGCCAAACACTGGGAGGTGTGCTAACAAGGACACTGGTCCCAAGGGTGGTGGATTCTGAGACCCCACATTGGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGTGTTTTAAAACTGTGAGGCTGATGCCGACACGTAACGGGTCAAAGCGGATAATATCTGTTAGCGGTGGCCTTGAGCTATTACAATAAGCCTATTAAATGTTTTTGTAGTTCAAGAACTCATTAGAAGGCATAAATTTCATACAATTTAGCTTGAATCCCATGGGATGTCACTTCCTCTCGTGTAGATCTCATGTTAATATCTCGAGCGTAACGCATAAGATAGAGATCCTTATACAAGAACATGCAGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAA

mRNA sequence

ACAGAACGAAACATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAAGAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCTCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTCTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCTCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAA

Coding sequence (CDS)

ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAAGAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCTCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTCTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCTCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAA

Protein sequence

MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD

Homology

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BLAST of CmoCh18G002230 vs. ExPASy Swiss-Prot
Match: Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 9.5e-63
Identity = 131/206 (63.59%), Postives = 162/206 (78.64%), Query Frame = 0


Query: 28  LNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFSLSIPESFTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPSTNP CVSTNP SSSF+F L+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

[Close]

BLAST of CmoCh18G002230 vs. ExPASy TrEMBL
Match: A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.3e-127
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CmoCh18G002230 vs. ExPASy TrEMBL
Match: A0A6J1GUJ9 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.3e-125
Identity = 234/242 (96.69%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY--------GQYMEAEVDGNF 180
           FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY        GQYMEAEVDGNF
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAGQYMEAEVDGNF 180

Query: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 235
           GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM
Sbjct: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 240

[Close]

BLAST of CmoCh18G002230 vs. ExPASy TrEMBL
Match: A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 228/234 (97.44%), Postives = 228/234 (97.44%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKK   NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CmoCh18G002230 vs. ExPASy TrEMBL
Match: A0A6J1JVV7 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.1e-121
Identity = 228/247 (92.31%), Postives = 228/247 (92.31%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKK   NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY-------------GQYMEAE 180
           FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY             GQYMEAE
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAFMIITGQYMEAE 180

Query: 181 VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP 235
           VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP
Sbjct: 181 VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP 240

[Close]

BLAST of CmoCh18G002230 vs. ExPASy TrEMBL
Match: A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.4e-103
Identity = 197/237 (83.12%), Postives = 212/237 (89.45%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKN---NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60
           MSSL FRP LVSPWKKK  N   NQ+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60

Query: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPK
Sbjct: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120

Query: 121 SSSFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
           SSSFAF L+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180

Query: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

[Close]

BLAST of CmoCh18G002230 vs. NCBI nr
Match: XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 464.2 bits (1193), Expect = 6.9e-127
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CmoCh18G002230 vs. NCBI nr
Match: KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459.1 bits (1180), Expect = 2.2e-125
Identity = 231/234 (98.72%), Postives = 232/234 (99.15%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKK NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAF LSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CmoCh18G002230 vs. NCBI nr
Match: XP_022955220.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 1.1e-124
Identity = 234/242 (96.69%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY--------GQYMEAEVDGNF 180
           FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY        GQYMEAEVDGNF
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAGQYMEAEVDGNF 180

Query: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 235
           GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM
Sbjct: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 240

[Close]

BLAST of CmoCh18G002230 vs. NCBI nr
Match: XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.0 bits (1164), Expect = 1.6e-123
Identity = 229/234 (97.86%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKK  NNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CmoCh18G002230 vs. NCBI nr
Match: XP_022994453.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 452.6 bits (1163), Expect = 2.1e-123
Identity = 228/234 (97.44%), Postives = 228/234 (97.44%), Query Frame = 0


Query: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKK   NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CmoCh18G002230 vs. TAIR 10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )

HSP 1 Score: 241.5 bits (615), Expect = 6.8e-64
Identity = 131/206 (63.59%), Postives = 162/206 (78.64%), Query Frame = 0


Query: 28  LNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFSLSIPESFTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPSTNP CVSTNP SSSF+F L+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

The following BLAST results are available for this feature:

BLAST of CmoCh18G002230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW33	9.5e-63	63.59	Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CmoCh18G002230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GT70	3.3e-127	100.00	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]
A0A6J1GUJ9	5.3e-125	96.69	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita moscha...	[more]
A0A6J1K581	1.0e-123	97.44	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima...	[more]
A0A6J1JVV7	6.1e-121	92.31	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita maxima...	[more]
A0A5A7UK02	3.4e-103	83.12	Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmoCh18G002230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955221.1	6.9e-127	100.00	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata...	[more]
KAG7012320.1	2.2e-125	98.72	Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022955220.1	1.1e-124	96.69	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita moschata...	[more]
XP_023542750.1	1.6e-123	97.86	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub...	[more]
XP_022994453.1	2.1e-123	97.44	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima]	[more]

BLAST of CmoCh18G002230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24930.1	6.8e-64	63.59	thylakoid lumenal 17.9 kDa protein, chloroplast	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037734	Thylakoid lumenal 17.9kDa protein	PANTHER	PTHR36783	THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTIC	coord: 23..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G002230.1	CmoCh18G002230.1	mRNA