CmoCh18G002140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G002140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	cycloeucalenol cycloisomerase
Location	Cmo_Chr18: 1390507 .. 1391726 (+)
RNA-Seq Expression	CmoCh18G002140
Synteny	CmoCh18G002140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGGTTGCATAGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATGTAATTTCCTATCCTCTCTTGTTCTTACAAAACTATTTTCAAAAACCTTTCTCAAAAGAATTTGTATCATTTTCAATCTTTATTTTTATCGAATAGAAGGAGAAAAACCGATTCTTTATATAGTAATTCGGCCTATTGATACTTTGGACGATCGGAATTTAACGTACAAAGTTGGCTCTTTATTCTATTTTTCCATTTTTCTTCGTGAATTACAAAAACTAGATAAGAGAAGGAAGACAATGATAACCATGAATCATCTTCTATAGTTGTCATTTTCTATTGCCCATAAACTTATCCTTGTACAAAGTTTAGATGACTCTAAAATCCCTCCCTCCTCACAACGGTATGAAAAATCCTCCCTAATAGAGGTATTTTGAAGTCAACCAAAAATCCTCCCTAATAGAGGTATTTTGAAATCGGAGGTTGACTGCAATACATAACAAACCGAATCGAACAATATCTACTAACTGTGAGCTCAAACTGTTACAAATAGTATTAAAGTCAGAGAGCTTAAAACTGTTACAAATAGTATCAGAATATCGAAGACTAGGCGGTGTACCAACAAGGACGTAAGGTCCTTAACGTGATAATAAGACCCTCATAGCTCTATTATAACATTAAGCCACTGGGGCTTGTAAAGCATGCTATTTTAGATTATTAAGTGGTAACATACAGTTCACGGCCATCGTTAATGTGGTGCCTTTCAAGTTCTCTTTCCTATTGTCAACTGATTTTAGCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

mRNA sequence

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

Coding sequence (CDS)

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

Protein sequence

MKDEPCKNWRKLKGKGKENCKVSSYARLFLLYHVTSNITLRRLRHSIASLSKHIQRATMIVALSYFIAYLETLAFGLPWFHGCILGDLVISNLPHITRTLKEFVLKVKCYRFFLTSSHHVGSIHNRIDEKPGDRSLGLAKSGRTLFLMVAIFHWMQC

Homology

[Close]

BLAST of CmoCh18G002140 vs. ExPASy Swiss-Prot
Match: Q9M643 (Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana OX=3702 GN=CPI1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-08
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SNITLRRLRHS A L   ++    A  I+ALSYFIAYLET+A           
Sbjct: 138 FLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIA----------- 197

Query: 89  GDLVISNLPHITRTLKEFVLKVKC--YRFFLTSSHHVGSIHNRIDEKPGD 134
               I+N P+     +  + +V C  Y  +   S     +  R+DEK  D
Sbjct: 198 ----IANFPYYEFVDRSAMYRVGCLFYAIYFIVSF---PMFFRMDEKSTD 229

[Close]

BLAST of CmoCh18G002140 vs. ExPASy TrEMBL
Match: A0A6J1GR71 (cycloeucalenol cycloisomerase OS=Cucurbita moschata OX=3662 GN=LOC111456735 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-12
Identity = 58/112 (51.79%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIASL +HIQRATM   I+ALSYF+AYLETLA           
Sbjct: 149 FLLYHVTSNMTLRRLRHSIASLPEHIQRATMIAWIMALSYFVAYLETLA----------- 208

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 209 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 240

[Close]

BLAST of CmoCh18G002140 vs. ExPASy TrEMBL
Match: A0A6J1K2V5 (cycloeucalenol cycloisomerase-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490163 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-12
Identity = 58/112 (51.79%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIA L +HIQRATM   IVALSYF+AYLETLA           
Sbjct: 88  FLLYHVTSNMTLRRLRHSIAGLPEHIQRATMVAWIVALSYFVAYLETLA----------- 147

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 148 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 179

[Close]

BLAST of CmoCh18G002140 vs. ExPASy TrEMBL
Match: A0A6J1K570 (cycloeucalenol cycloisomerase-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490163 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-12
Identity = 58/112 (51.79%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIA L +HIQRATM   IVALSYF+AYLETLA           
Sbjct: 143 FLLYHVTSNMTLRRLRHSIAGLPEHIQRATMVAWIVALSYFVAYLETLA----------- 202

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 203 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 234

[Close]

BLAST of CmoCh18G002140 vs. ExPASy TrEMBL
Match: A0A7J9KLP5 (Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_016975 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-11
Identity = 56/117 (47.86%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL K+IQ AT    I+ALSYFIAYLETLA          
Sbjct: 49  VFLFYHVTSNMTLRRLRHSIASLPKNIQLATEVAWILALSYFIAYLETLA---------- 108

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 109 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 141

[Close]

BLAST of CmoCh18G002140 vs. ExPASy TrEMBL
Match: A0A0B0P8U0 (Cycloeucalenol cycloisomerase-like protein OS=Gossypium arboreum OX=29729 GN=LOC108469977 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

[Close]

BLAST of CmoCh18G002140 vs. NCBI nr
Match: XP_022954478.1 (cycloeucalenol cycloisomerase [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 4.9e-12
Identity = 58/112 (51.79%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIASL +HIQRATM   I+ALSYF+AYLETLA           
Sbjct: 149 FLLYHVTSNMTLRRLRHSIASLPEHIQRATMIAWIMALSYFVAYLETLA----------- 208

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 209 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 240

[Close]

BLAST of CmoCh18G002140 vs. NCBI nr
Match: KAG6573123.1 (Cycloeucalenol cycloisomerase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 4.9e-12
Identity = 58/112 (51.79%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIASL +HIQRATM   I+ALSYF+AYLETLA           
Sbjct: 147 FLLYHVTSNMTLRRLRHSIASLPEHIQRATMIAWIMALSYFVAYLETLA----------- 206

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 207 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 238

[Close]

BLAST of CmoCh18G002140 vs. NCBI nr
Match: XP_022994443.1 (cycloeucalenol cycloisomerase-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-12
Identity = 58/112 (51.79%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIA L +HIQRATM   IVALSYF+AYLETLA           
Sbjct: 143 FLLYHVTSNMTLRRLRHSIAGLPEHIQRATMVAWIVALSYFVAYLETLA----------- 202

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 203 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 234

[Close]

BLAST of CmoCh18G002140 vs. NCBI nr
Match: XP_022994444.1 (cycloeucalenol cycloisomerase-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-12
Identity = 58/112 (51.79%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIA L +HIQRATM   IVALSYF+AYLETLA           
Sbjct: 88  FLLYHVTSNMTLRRLRHSIAGLPEHIQRATMVAWIVALSYFVAYLETLA----------- 147

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 148 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 179

[Close]

BLAST of CmoCh18G002140 vs. NCBI nr
Match: XP_023542732.1 (cycloeucalenol cycloisomerase-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-11
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FLLYHVTSN+TLRRLRHSIA L +HIQ ATM   IVALSYF+AYLETLA           
Sbjct: 88  FLLYHVTSNMTLRRLRHSIAGLPEHIQWATMVAWIVALSYFVAYLETLA----------- 147

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYRF---FLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +F  +   Y+F   F      V   +  RIDEKPGD
Sbjct: 148 ----ISNFPYY-----QFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGD 179

[Close]

BLAST of CmoCh18G002140 vs. TAIR 10
Match: AT5G50375.1 (cyclopropyl isomerase )

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-09
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SNITLRRLRHS A L   ++    A  I+ALSYFIAYLET+A           
Sbjct: 138 FLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIA----------- 197

Query: 89  GDLVISNLPHITRTLKEFVLKVKC--YRFFLTSSHHVGSIHNRIDEKPGD 134
               I+N P+     +  + +V C  Y  +   S     +  R+DEK  D
Sbjct: 198 ----IANFPYYEFVDRSAMYRVGCLFYAIYFIVSF---PMFFRMDEKSTD 229

[Close]

BLAST of CmoCh18G002140 vs. TAIR 10
Match: AT5G50375.2 (cyclopropyl isomerase )

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-09
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SNITLRRLRHS A L   ++    A  I+ALSYFIAYLET+A           
Sbjct: 138 FLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIA----------- 197

Query: 89  GDLVISNLPHITRTLKEFVLKVKC--YRFFLTSSHHVGSIHNRIDEKPGD 134
               I+N P+     +  + +V C  Y  +   S     +  R+DEK  D
Sbjct: 198 ----IANFPYYEFVDRSAMYRVGCLFYAIYFIVSF---PMFFRMDEKSTD 229

The following BLAST results are available for this feature:

BLAST of CmoCh18G002140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M643	5.9e-08	40.00	Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana OX=3702 GN=CPI1 PE=2 SV=1	[more]

BLAST of CmoCh18G002140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GR71	2.4e-12	51.79	cycloeucalenol cycloisomerase OS=Cucurbita moschata OX=3662 GN=LOC111456735 PE=4...	[more]
A0A6J1K2V5	3.1e-12	51.79	cycloeucalenol cycloisomerase-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1K570	3.1e-12	51.79	cycloeucalenol cycloisomerase-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A7J9KLP5	7.7e-11	47.86	Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_...	[more]
A0A0B0P8U0	2.2e-10	47.01	Cycloeucalenol cycloisomerase-like protein OS=Gossypium arboreum OX=29729 GN=LOC...	[more]

BLAST of CmoCh18G002140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954478.1	4.9e-12	51.79	cycloeucalenol cycloisomerase [Cucurbita moschata]	[more]
KAG6573123.1	4.9e-12	51.79	Cycloeucalenol cycloisomerase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022994443.1	6.4e-12	51.79	cycloeucalenol cycloisomerase-like isoform X1 [Cucurbita maxima]	[more]
XP_022994444.1	6.4e-12	51.79	cycloeucalenol cycloisomerase-like isoform X2 [Cucurbita maxima]	[more]
XP_023542732.1	5.5e-11	50.89	cycloeucalenol cycloisomerase-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh18G002140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50375.1	4.2e-09	40.00	cyclopropyl isomerase	[more]
AT5G50375.2	4.2e-09	40.00	cyclopropyl isomerase	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G002140.1	CmoCh18G002140.1	mRNA