CmoCh18G001560 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G001560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	major pollen allergen Ole e 6-like
Location	Cmo_Chr18: 1084312 .. 1084779 (-)
RNA-Seq Expression	CmoCh18G001560
Synteny	CmoCh18G001560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATCAAACGCCGGTGAAGCCTCAAAATCTCACCCAAGATTTTAAAGCATCACCAAACGCAAGACCAGAAAAATGGCGAACAAGATGATCGCAATGCTTTTGATGTGCACTCTCGTCGTCGCCGCTCTGCAACTCCCCGCCGCCGCCACCGCCGCCACCGACGCTGACATCGTCGAGGTGGCGGAGGCCAAATTTGACGCGAAATTCAGGTCTTGCTACAGACATTGCGAGAAGGAGTGCATCGACAATGGCAGCAGCCAAAGCTTCTGCGAAGTTAAATGCGACGAAGATTGCGGTGACAAGGAAGTTGCCGGTAATCTCTCTTCCAATAATTAATTAACTTCTTTTTTTTTTTCTCCTTTTATTAATTAATTTGAATTATTTTATTTGTTTTACAGATAAGCTTCATCTTGATTTGAATTGAATAATGGGGGACAAAAGCAAGAAGATGAAGAGCTTTCCAGAG

mRNA sequence

CAAAATCAAACGCCGGTGAAGCCTCAAAATCTCACCCAAGATTTTAAAGCATCACCAAACGCAAGACCAGAAAAATGGCGAACAAGATGATCGCAATGCTTTTGATGTGCACTCTCGTCGTCGCCGCTCTGCAACTCCCCGCCGCCGCCACCGCCGCCACCGACGCTGACATCGTCGAGGTGGCGGAGGCCAAATTTGACGCGAAATTCAGGTCTTGCTACAGACATTGCGAGAAGGAGTGCATCGACAATGGCAGCAGCCAAAGCTTCTGCGAAGTTAAATGCGACGAAGATTGCGGTGACAAGGAAGTTGCCGATAAGCTTCATCTTGATTTGAATTGAATAATGGGGGACAAAAGCAAGAAGATGAAGAGCTTTCCAGAG

Coding sequence (CDS)

ATGGCGAACAAGATGATCGCAATGCTTTTGATGTGCACTCTCGTCGTCGCCGCTCTGCAACTCCCCGCCGCCGCCACCGCCGCCACCGACGCTGACATCGTCGAGGTGGCGGAGGCCAAATTTGACGCGAAATTCAGGTCTTGCTACAGACATTGCGAGAAGGAGTGCATCGACAATGGCAGCAGCCAAAGCTTCTGCGAAGTTAAATGCGACGAAGATTGCGGTGACAAGGAAGTTGCCGATAAGCTTCATCTTGATTTGAATTGA

Protein sequence

MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNGSSQSFCEVKCDEDCGDKEVADKLHLDLN

Homology

[Close]

BLAST of CmoCh18G001560 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-07
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 42 DAKFRSCYRHCEKECIDNGSSQSFCEVKCDEDCGDKEVADKL 84
          +A+F+ CY  C KEC D G+  +FCE+KCD DC  K+V +KL
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of CmoCh18G001560 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KMIA+ LMC +VVAALQ      +A   D V   EAKFDAK++SC++ CEKEC++NG
Sbjct: 1  MAKKMIALFLMCIVVVAALQF----ASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHLDLN 89
          S QS+CEVKCDEDC +KEVADKLH++L+
Sbjct: 61 SGQSYCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of CmoCh18G001560 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KMIA+ LMC +VVAALQ      +A   D V   EAKFDAK++SC++ CEKEC++NG
Sbjct: 1  MAKKMIALFLMCIVVVAALQF----ASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHLDLN 89
          S QS+CEVKCDEDC +KEVADKLH++L+
Sbjct: 61 SGQSYCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of CmoCh18G001560 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.3e-19
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KMIA+LL+C +VVAALQ+ +A  +A +A      EAKF+AK+R CY  CEKEC++ G
Sbjct: 1  MAKKMIAVLLVCIVVVAALQVSSATESAKEAKY----EAKFEAKYRLCYEKCEKECLEKG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHL 86
          + QSFCEVKCDEDCG+KE ADKLH+
Sbjct: 61 NGQSFCEVKCDEDCGEKEAADKLHI 81

[Close]

BLAST of CmoCh18G001560 vs. ExPASy TrEMBL
Match: A0A6J1JXL5 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KMIA+LL+C +V+AALQ+ +A  +  +A      EAKF+AK+R CY  CEKEC++ G
Sbjct: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKY----EAKFEAKYRLCYEKCEKECLEKG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHL 86
          + QSFCEVKCDEDCG+KE ADKLH+
Sbjct: 61 NGQSFCEVKCDEDCGEKEAADKLHI 81

[Close]

BLAST of CmoCh18G001560 vs. ExPASy TrEMBL
Match: A0A0A0KPA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MANKMIA+ LMC +VVAALQ      A  + + V   EAKFDAK++SC+  CEKEC+  G
Sbjct: 1  MANKMIALFLMCIVVVAALQF-----ANANKEDVAKYEAKFDAKYKSCFETCEKECLRYG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHLDLN 89
          S QS+CEVKCDEDC +KE ADKLH++L+
Sbjct: 61 SGQSYCEVKCDEDCDEKEAADKLHIELH 83

[Close]

BLAST of CmoCh18G001560 vs. NCBI nr
Match: KAG6573087.1 (Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG
Sbjct: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHLDLN 89
          SSQSFCEVKCDEDCGDKEVADKLHLDLN
Sbjct: 61 SSQSFCEVKCDEDCGDKEVADKLHLDLN 88

[Close]

BLAST of CmoCh18G001560 vs. NCBI nr
Match: XP_008456958.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa] >TYJ96804.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.7e-20
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KMIA+ LMC +VVAALQ      +A   D V   EAKFDAK++SC++ CEKEC++NG
Sbjct: 1  MAKKMIALFLMCIVVVAALQF----ASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHLDLN 89
          S QS+CEVKCDEDC +KEVADKLH++L+
Sbjct: 61 SGQSYCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of CmoCh18G001560 vs. NCBI nr
Match: XP_038891517.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-19
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KM+A+ LMC +VVAALQ      A  + D V   EAKFDAK++SCY  CEKEC+ NG
Sbjct: 1  MAKKMMAVFLMCIVVVAALQF-----ATANEDEVTKYEAKFDAKYKSCYETCEKECLANG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHLDLN 89
          S QSFCEVKCDEDC +KEVADKLH+ L+
Sbjct: 61 SGQSFCEVKCDEDCDEKEVADKLHIKLH 83

[Close]

BLAST of CmoCh18G001560 vs. NCBI nr
Match: XP_022929811.1 (major pollen allergen Ole e 6-like [Cucurbita moschata] >XP_022929878.1 major pollen allergen Ole e 6-like [Cucurbita moschata] >XP_022929879.1 major pollen allergen Ole e 6-like [Cucurbita moschata] >XP_022929880.1 major pollen allergen Ole e 6-like [Cucurbita moschata])

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-19
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KMIA+LL+C +VVAALQ+ +A  +A +A      EAKF+AK+R CY  CEKEC++ G
Sbjct: 1  MAKKMIAVLLVCIVVVAALQVSSATESAKEAKY----EAKFEAKYRLCYEKCEKECLEKG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHL 86
          + QSFCEVKCDEDCG+KE ADKLH+
Sbjct: 61 NGQSFCEVKCDEDCGEKEAADKLHI 81

[Close]

BLAST of CmoCh18G001560 vs. NCBI nr
Match: KAG6575285.1 (Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575288.1 Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575294.1 Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-19
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MANKMIAMLLMCTLVVAALQLPAAATAATDADIVEVAEAKFDAKFRSCYRHCEKECIDNG 60
          MA KMIA+LL+C +VVAALQ+ +A  +A +A      EAKF+AK+R CY  CEKEC++ G
Sbjct: 1  MAKKMIAVLLVCIVVVAALQVSSATESAKEAKY----EAKFEAKYRLCYEKCEKECLEKG 60

Query: 61 SSQSFCEVKCDEDCGDKEVADKLHL 86
          + QSFCEVKCDEDCG+KE ADKLH+
Sbjct: 61 NGQSFCEVKCDEDCGEKEAADKLHI 81

The following BLAST results are available for this feature:

BLAST of CmoCh18G001560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	6.2e-07	52.38	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of CmoCh18G001560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCS2	2.3e-20	62.50	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C530	2.3e-20	62.50	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]
A0A6J1EQ21	3.3e-19	62.35	major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354...	[more]
A0A6J1JXL5	2.1e-18	60.00	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 P...	[more]
A0A0A0KPA7	3.6e-18	60.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1	[more]

BLAST of CmoCh18G001560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573087.1	3.5e-39	100.00	Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008456958.1	4.7e-20	62.50	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major...	[more]
XP_038891517.1	3.0e-19	63.64	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_022929811.1	6.8e-19	62.35	major pollen allergen Ole e 6-like [Cucurbita moschata] >XP_022929878.1 major po...	[more]
KAG6575285.1	6.8e-19	62.35	Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]

BLAST of CmoCh18G001560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 48..84 e-value: 1.4E-11 score: 44.1
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..87
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 42..86 e-value: 1.9E-15 score: 58.1
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 42..83
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G001560.1	CmoCh18G001560.1	mRNA