CmoCh18G001490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G001490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L27A
Location	Cmo_Chr18: 1051138 .. 1051578 (-)
RNA-Seq Expression	CmoCh18G001490
Synteny	CmoCh18G001490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGCCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGAGCGGTTGTCCTTACGGCTTAG

mRNA sequence

ATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGCCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGAGCGGTTGTCCTTACGGCTTAG

Coding sequence (CDS)

ATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGCCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGAGCGGTTGTCCTTACGGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPVVVKAKLISKIAEKKIKENGGAVVLTA

Homology

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BLAST of CmoCh18G001490 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 4.1e-72
Identity = 131/146 (89.73%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDN PLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-70
Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDN PLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-50
Identity = 100/149 (67.11%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---APLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+    AP+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of CmoCh18G001490 vs. ExPASy Swiss-Prot
Match: P14115 (60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-50
Identity = 100/149 (67.11%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---APLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+    AP+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of CmoCh18G001490 vs. ExPASy Swiss-Prot
Match: P18445 (60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-50
Identity = 100/149 (67.11%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---APLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+    AP+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of CmoCh18G001490 vs. ExPASy TrEMBL
Match: A0A6J1GVV4 (60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 6.8e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. ExPASy TrEMBL
Match: A0A6J1JWJ1 (60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. ExPASy TrEMBL
Match: A0A6J1KLW9 (60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111495371 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPL+DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. ExPASy TrEMBL
Match: A0A6J1E6Y8 (60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431351 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPL+DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. ExPASy TrEMBL
Match: A0A5A7UL02 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003900 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.2e-76
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. NCBI nr
Match: XP_022955304.1 (60S ribosomal protein L27a-3-like [Cucurbita moschata])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. NCBI nr
Match: XP_022994677.1 (60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosomal protein L27a-3-like [Cucurbita pepo subsp. pepo] >KAG6573080.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012266.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.1 bits (762), Expect = 4.1e-77
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. NCBI nr
Match: XP_022923732.1 (60S ribosomal protein L27a-3-like [Cucurbita moschata] >XP_023001144.1 60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023519004.1 60S ribosomal protein L27a-3-like [Cucurbita pepo subsp. pepo] >KAG6584199.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019796.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPL+DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. NCBI nr
Match: XP_008438796.1 (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >TYJ99181.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 4.5e-76
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. NCBI nr
Match: XP_012079990.1 (60S ribosomal protein L27a-3 [Jatropha curcas] >KDP31039.1 hypothetical protein JCGZ_11415 [Jatropha curcas])

HSP 1 Score: 294.3 bits (752), Expect = 5.9e-76
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDNAPL+DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-73
Identity = 131/146 (89.73%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDN PLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-71
Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDN PLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh18G001490 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-30
Identity = 79/145 (54.48%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYC IVN+DKLWS+                          VLGKG LPEN+PV
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLISKIAEKKIKENGGAVVLT 146
           VVKAKL+S   EKKIKE G AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

The following BLAST results are available for this feature:

BLAST of CmoCh18G001490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49637	4.1e-72	89.73	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=...	[more]
Q9LR33	1.7e-70	88.36	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=...	[more]
Q56K03	1.2e-50	67.11	60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3	[more]
P14115	1.2e-50	67.11	60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5	[more]
P18445	1.2e-50	67.11	60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3	[more]

BLAST of CmoCh18G001490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVV4	6.8e-78	100.00	60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 ...	[more]
A0A6J1JWJ1	2.0e-77	99.32	60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE...	[more]
A0A6J1KLW9	1.3e-76	97.95	60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111495371 PE...	[more]
A0A6J1E6Y8	1.3e-76	97.95	60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431351 ...	[more]
A0A5A7UL02	2.2e-76	98.63	60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CmoCh18G001490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955304.1	1.4e-77	100.00	60S ribosomal protein L27a-3-like [Cucurbita moschata]	[more]
XP_022994677.1	4.1e-77	99.32	60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosom...	[more]
XP_022923732.1	2.6e-76	97.95	60S ribosomal protein L27a-3-like [Cucurbita moschata] >XP_023001144.1 60S ribos...	[more]
XP_008438796.1	4.5e-76	98.63	PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ri...	[more]
XP_012079990.1	5.9e-76	95.89	60S ribosomal protein L27a-3 [Jatropha curcas] >KDP31039.1 hypothetical protein ...	[more]

BLAST of CmoCh18G001490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70600.1	2.9e-73	89.73	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	1.2e-71	88.36	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	4.0e-30	54.48	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 e-value: 6.5E-20 score: 72.1
None	No IPR available	GENE3D	3.100.10.10		coord: 58..146 e-value: 5.3E-40 score: 137.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146
None	No IPR available	PANTHER	PTHR11721:SF21	60S RIBOSOMAL PROTEIN L27A-3	coord: 1..146
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 1..145 score: 11.754468
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 6..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G001490.1	CmoCh18G001490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome