CmoCh18G000150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G000150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr18: 64217 .. 64771 (+)
RNA-Seq ExpressionCmoCh18G000150
SyntenyCmoCh18G000150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACGAAACGATGGAGAAAAAGAGAGTATATAAATAAAGATGCTGAATCCCCCACTAACTTTTTTCTAAAGGGGCAGAGAAGAAAAAGCGATACTCCAGTCTCCGGCTCCAAATATAAGAGAACGTTTTGTTTTTAAGCGGCAATTCGAAGCAGATTCTTCTCCGTTTTCCCATCTCTTCTCTGCTTATTCAATTTACCAATTTACTCTCTTATTCTCAGATTCTGTGTGAGATTCATGCTATACTACTCTCTGTTTCTTCATCTGTTTTTCTTTCTTAGATTTTCTCTCTTTTCTATTCAATTTGTGTTCTTCTTCTACTGCTGTAGGTTTTTCTTAATCTTCTACCTCCAATTGCGGACTTGCTTTCTCCAGGATCACAGGGATGATTTTCTGGAGAAACAATTAGGATTCTACACAGTGCTACTCCAGTTGACAGTTCCATTGCTGAGAAGGTATGCTGAATGCGCCTTTCTGATCTTCATATCCACCCGTGTCTTCTTCTCCGATCCCCTAGCGATCGATTTCTCCTTGGATTTTCGACATCTGTAG

mRNA sequence

ATGGAAACGAAACGATGGAGAAAAAGAGAGTATATAAATAAAGATGCTGAATCCCCCACTAACTTTTTTCTAAAGGGGCAGAGAAGAAAAAGCGATACTCCAGTCTCCGGCTCCAAATATAAGAGAACGTTTTTCTTAATCTTCTACCTCCAATTGCGGACTTGCTTTCTCCAGGATCACAGGGATGATTTTCTGGAGAAACAATTAGGATTCTACACAGTGCTACTCCAGTTGACAGTTCCATTGCTGAGAAGGTATGCTGAATGCGCCTTTCTGATCTTCATATCCACCCGTGTCTTCTTCTCCGATCCCCTAGCGATCGATTTCTCCTTGGATTTTCGACATCTGTAG

Coding sequence (CDS)

ATGGAAACGAAACGATGGAGAAAAAGAGAGTATATAAATAAAGATGCTGAATCCCCCACTAACTTTTTTCTAAAGGGGCAGAGAAGAAAAAGCGATACTCCAGTCTCCGGCTCCAAATATAAGAGAACGTTTTTCTTAATCTTCTACCTCCAATTGCGGACTTGCTTTCTCCAGGATCACAGGGATGATTTTCTGGAGAAACAATTAGGATTCTACACAGTGCTACTCCAGTTGACAGTTCCATTGCTGAGAAGGTATGCTGAATGCGCCTTTCTGATCTTCATATCCACCCGTGTCTTCTTCTCCGATCCCCTAGCGATCGATTTCTCCTTGGATTTTCGACATCTGTAG

Protein sequence

METKRWRKREYINKDAESPTNFFLKGQRRKSDTPVSGSKYKRTFFLIFYLQLRTCFLQDHRDDFLEKQLGFYTVLLQLTVPLLRRYAECAFLIFISTRVFFSDPLAIDFSLDFRHL
Homology
[Close]
BLAST of CmoCh18G000150 vs. NCBI nr
Match: KAG7012098.1 (hypothetical protein SDJN02_24849, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.6 bits (444), Expect = 2.4e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  METKRWRKREYINKDAESPTNFFLKGQRRKSDTPVSGSKYKRTFFLIFYLQLRTCFLQDH 60
          METKRWRKREYINKDAESPTNFFLKGQRRKSDTPVSGSKYKRTFFLIFYLQLRTCFLQDH
Sbjct: 1  METKRWRKREYINKDAESPTNFFLKGQRRKSDTPVSGSKYKRTFFLIFYLQLRTCFLQDH 60

Query: 61 RDDFLEKQLGFYTVLLQLTVPLLRR 86
          RDDFLEKQLGFYTVLLQLTVPLLRR
Sbjct: 61 RDDFLEKQLGFYTVLLQLTVPLLRR 85

[Close]
BLAST of CmoCh18G000150 vs. NCBI nr
Match: KAG6572912.1 (hypothetical protein SDJN03_26799, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-32
Identity = 83/122 (68.03%), Postives = 88/122 (72.13%), Query Frame = 0 

Query: 7   RKREYINKDAESPTNFFLKGQRRKSDTPVSG-----SKYKRT-------FFLIFYLQLRT 66
           +K+ Y +        F  K Q     +P S      S Y+ T       FFLIFYLQLRT
Sbjct: 60  KKKRYSSPAPNIRERFVFKRQFEADSSPFSHLFSAYSIYQFTLLFSDSVFFLIFYLQLRT 119

Query: 67  CFLQDHRDDFLEKQLGFYTVLLQLTVPLLRRYAECAFLIFISTRVFFSDPLAIDFSLDFR 117
           CFLQDHRDDFLEKQLGFYTVLLQLTVPLLRRYAECAFLIFISTRVFFSDPLAIDFSLDFR
Sbjct: 120 CFLQDHRDDFLEKQLGFYTVLLQLTVPLLRRYAECAFLIFISTRVFFSDPLAIDFSLDFR 179

The following BLAST results are available for this feature:
BLAST of CmoCh18G000150 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh18G000150 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh18G000150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012098.12.4e-40100.00hypothetical protein SDJN02_24849, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572912.13.2e-3268.03hypothetical protein SDJN03_26799, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh18G000150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G000150.1CmoCh18G000150.1mRNA