CmoCh18G000140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G000140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribonucloprotein
Location	Cmo_Chr18: 55383 .. 57528 (-)
RNA-Seq Expression	CmoCh18G000140
Synteny	CmoCh18G000140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTAGTAATAAAGATGGGGCAGAAGCCATTATCCCGAGCAGACGCCCATATACGTCCTCCTCCCAAATCCTTCTTAGCTCCGGCAGTTCTATTTCATCCAACCCAATGGGGAGTGACAGCGAAGCAGAGAAGTCGCATCTGAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCACCAATTGCTAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGCACCCTAAAGCTTGTTCGTAAAGGTATTCCATCTCTTTTCTCGATGTGTATTGGAGGCCTTGCTGCTTGTTTGTACCAATTTTGAGCTCGAATTACTTTTCTTATTTCTTTTGCCGTCATTCCATGGGGATTACTCCTTGTATCTCTAAACTGGTAATGAAACCAGAGTGACACGTTTATGTTTCTTGCTTGGCTAAGGTTAGCTCATTTAATCAGGATCGTGTCGGTGCCTTTTATGCCGTTTGATAATAAAGTATTAAGTTATTGTATTCGAAAGCAGCGAATGAGTGTCCACATAAGGGGATTGATTTTATTTGGTTTGTACTCGTTAATATTCATTTTGGCATCGTTCTTTGTATGACCTGGTTTCTGTCCTTTCATTTTCTTGCTTGATAAATGTGATTTTTATATTAAATATACATAAGTTGCGTTCTTGATCTTTCAGCTGCTGAATACAAGTGCTTGAAACGGGGGGTGAAGGAGGTGGTCAAAAGCATAAGGCGCGGACAAAAAGGGTAATTTCCACTATTTTTTTTTTTTTTTTTTAATCTTACTTTTATCTATTGGGGATTTGTATTATGCTAAAGATATAACAATGGGAATGTGGGTCTTGCAAATAGGCAAGGAAGGAAGAATACTGAATGTCATACCATTGAGTATAGTAGCTGTGCTATGGATTTGTTTGTTACATGGACAATATATTTCCAATAGCTTTTTTTAGGTACATTATGCTAAGCTTTTGGATGGATTAAAATCAAAAGAAGCCTTTACAACATTATACTTCGTATGTAATACCTTAAATTCCTTCTACTGTATGGTATTTTTAATTGCTTTGCCCTCTTGTTTTATACAATGCAGGTTTTGTGTAATAGCTGGAAACATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCAGACATTCGCTACGTATATGTTCCTTCCAAGGAAGTAAGTGATCGTTCATGTTCTAATCTATGGGAATGTCTGTTTTTTAGTTTTTGGTGTGATGCAAAGTAGTTGAGAAAGGAGAGAAGTGATGGCTACCTATTTGTTCATTTCTCGTGGATCAGTTGTTAATTTTATTCTTATACTATGTCATTGTTACTTGAGTTTAAGTTTGACATAATTCAATTTCCATAGCACCTTATAAGTTTTCTCGACCACAATTTGCCATGATTATCCGTTCCTTGTGATAATAACAAAAGGAGTTTAATCACGTGTGTTCTTCAGGATCTTGCCAATGCCGGGTCGACCAAGAGGCCAACATGTTGTGTTCTGATACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGAGTTTGACCAAGTTGTATCTGAAGTATCGGAACTTACAAGTAGTATTTTCTGAAGGGTAAAAGCCATTGTTCTTTAACTTACCCTCAATGTACCTGTAGCTTTCTTCTGCGAATTGGTTAGTAGTGTGCTCTGTTTCACTTAAAATTTGATTGGCCTATGCCATTTCTACTGCAACCTTTTATCTCCGTTGATATTTTCCATCTAGTCCAGTAGTCACGTTTTAACATTCTTAGTTTCTCAGATTGCGCAGAATCCAGTCGGTGGATTGATATTCTTTTAAGAAACTGAGTGATTCAATAGAATTGGCCAGAGAACATAGCCTTATTAAGTAGTGGAATCAATTATTTGTTGCAAGAACTTAGATAAATGCTGCATCATTTGATATTCAGCCATGTGTATCTAATGGACGGTTCAAACCACCTCTTTGAAGCGATGGTTTAAAGGACCTTGCAGTTGGATTAAATTTCTCTAAAATTAGACGTCGGGTCCAATTCAAGTTTTCAATTCTTAATCTGTTCATTAATTTCTATTGCCGTGGCATTTGTGGACTAGTTTGTACGAAGA

mRNA sequence

ACCCTAGTAATAAAGATGGGGCAGAAGCCATTATCCCGAGCAGACGCCCATATACGTCCTCCTCCCAAATCCTTCTTAGCTCCGGCAGTTCTATTTCATCCAACCCAATGGGGAGTGACAGCGAAGCAGAGAAGTCGCATCTGAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCACCAATTGCTAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGCACCCTAAAGCTTGTTCGTAAAGCTGCTGAATACAAGTGCTTGAAACGGGGGGTGAAGGAGGTGGTCAAAAGCATAAGGCGCGGACAAAAAGGGTTTTGTGTAATAGCTGGAAACATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCAGACATTCGCTACGTATATGTTCCTTCCAAGGAAGATCTTGCCAATGCCGGGTCGACCAAGAGGCCAACATGTTGTGTTCTGATACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGAGTTTGACCAAGTTGTATCTGAAGTATCGGAACTTACAAGTAGTATTTTCTGAAGGGTAAAAGCCATTGTTCTTTAACTTACCCTCAATGTACCTGTAGCTTTCTTCTGCGAATTGGTTAGTAGTGTGCTCTGTTTCACTTAAAATTTGATTGGCCTATGCCATTTCTACTGCAACCTTTTATCTCCGTTGATATTTTCCATCTAGTCCAGTAGTCACGTTTTAACATTCTTAGTTTCTCAGATTGCGCAGAATCCAGTCGGTGGATTGATATTCTTTTAAGAAACTGAGTGATTCAATAGAATTGGCCAGAGAACATAGCCTTATTAAGTAGTGGAATCAATTATTTGTTGCAAGAACTTAGATAAATGCTGCATCATTTGATATTCAGCCATGTGTATCTAATGGACGGTTCAAACCACCTCTTTGAAGCGATGGTTTAAAGGACCTTGCAGTTGGATTAAATTTCTCTAAAATTAGACGTCGGGTCCAATTCAAGTTTTCAATTCTTAATCTGTTCATTAATTTCTATTGCCGTGGCATTTGTGGACTAGTTTGTACGAAGA

Coding sequence (CDS)

ATGGGGAGTGACAGCGAAGCAGAGAAGTCGCATCTGAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCACCAATTGCTAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGCACCCTAAAGCTTGTTCGTAAAGCTGCTGAATACAAGTGCTTGAAACGGGGGGTGAAGGAGGTGGTCAAAAGCATAAGGCGCGGACAAAAAGGGTTTTGTGTAATAGCTGGAAACATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCAGACATTCGCTACGTATATGTTCCTTCCAAGGAAGATCTTGCCAATGCCGGGTCGACCAAGAGGCCAACATGTTGTGTTCTGATACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGAGTTTGACCAAGTTGTATCTGAAGTATCGGAACTTACAAGTAGTATTTTCTGA

Protein sequence

MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF

Homology

[Close]

BLAST of CmoCh18G000140 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-54
Identity = 112/158 (70.89%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS  K+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSI 159
           VL+  KP KG+L + E  KLK +++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of CmoCh18G000140 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 76/156 (48.72%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDK--EKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGV 60
           MG D++  K   + K  +  + ++ A+ P AKPLA KKL K+ LK V+KA++ K +KRGV
Sbjct: 1   MGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGV 60

Query: 61  KEVVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPT 120
           KEVVK++R+G+KG  VIAG+ISP DVI+H+P+LCE+  + Y+++PSK+DL  AG+TKRPT
Sbjct: 61  KEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPT 120

Query: 121 CCVLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSEL 155
             V I    NK + G  ++E+ K  F++VV EV  L
Sbjct: 121 SVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156

[Close]

BLAST of CmoCh18G000140 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 68/154 (44.16%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M  D +  K     +++    L AL PIAKPLA KKL K+ +K V+KA++ K + RGVKE
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVK++R+G+KG  ++AG+ISP+DVI+H+P+LCE+ ++ Y+Y  SKE L  A +TKRPT C
Sbjct: 61  VVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSEL 155
           V+I     K ++   E+   K  +++++ EV  L
Sbjct: 121 VMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152

[Close]

BLAST of CmoCh18G000140 vs. ExPASy Swiss-Prot
Match: Q8I7X7 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri OX=7741 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-24
Identity = 61/156 (39.10%), Postives = 102/156 (65.38%), Query Frame = 0


Query: 4   DSEAEKSHLKDKEKEKKKLLA-LAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVV 63
           + E    + +D+E+  + L   + PIA PLA +KL KR  K V+KA++ K +++G+++V 
Sbjct: 15  EHEESGGNKEDRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQ 74

Query: 64  KSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVL 123
           K I++G++G  +IAG+ +PI+V  H+P++CE+A I Y YVP+K+DL  A  +KRPTCCVL
Sbjct: 75  KFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVL 134

Query: 124 IQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSI 159
           +  KPN         E  ++ +D+ +++V+ L   I
Sbjct: 135 L--KPN---------ESYQSSYDECLTDVTTLPRPI 159

[Close]

BLAST of CmoCh18G000140 vs. ExPASy Swiss-Prot
Match: Q6PBV6 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio OX=7955 GN=nhp2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-24
Identity = 64/144 (44.44%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 16  EKEKKKLLA-LAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCV 75
           EK  ++L+A + PIA PLA +KL K+  K V+KAA+ K ++RGVKEV K I +G+ G  V
Sbjct: 18  EKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVV 77

Query: 76  IAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLIQTKPNKGELGS 135
            AG+  PIDV  H+PI+CE+  + Y YVPSK DL ++  +KRPTC ++I  KP+      
Sbjct: 78  FAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KPH------ 137

Query: 136 TEQEKLKAEFDQVVSEVSELTSSI 159
              ++ K  +D+ V EV+ L   I
Sbjct: 138 ---DEYKEAYDECVEEVTSLPKPI 150

[Close]

BLAST of CmoCh18G000140 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of CmoCh18G000140 vs. ExPASy TrEMBL
Match: A0A6J1K350 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.3e-78
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VLIQTKPNKGELGSTEQEKLKAEFDQVV+EVSELTSSIF
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

[Close]

BLAST of CmoCh18G000140 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.0e-75
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTS++F
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of CmoCh18G000140 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.0e-75
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTS++F
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of CmoCh18G000140 vs. ExPASy TrEMBL
Match: A0A0A0LVP3 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.5e-74
Identity = 149/159 (93.71%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS LKDKEKE KKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRLKDKEKE-KKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTS++F
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 158

[Close]

BLAST of CmoCh18G000140 vs. NCBI nr
Match: XP_022955313.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 3.6e-79
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of CmoCh18G000140 vs. NCBI nr
Match: XP_023541121.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VLIQTKPNKGELGSTEQEKLKAEFDQVV+EVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSVF 159

[Close]

BLAST of CmoCh18G000140 vs. NCBI nr
Match: XP_022994544.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima])

HSP 1 Score: 300.4 bits (768), Expect = 8.9e-78
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VLIQTKPNKGELGSTEQEKLKAEFDQVV+EVSELTSSIF
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

[Close]

BLAST of CmoCh18G000140 vs. NCBI nr
Match: XP_008454886.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo] >TYJ98965.1 H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-75
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTS++F
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of CmoCh18G000140 vs. NCBI nr
Match: XP_038894923.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida])

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-75
Identity = 149/159 (93.71%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSH KDK+KEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHQKDKKKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 160
           VL+QTKPNKGELGSTEQEKLKA+++QVV+EVSELTS++F
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYEQVVAEVSELTSTLF 159

[Close]

BLAST of CmoCh18G000140 vs. TAIR 10
Match: AT5G08180.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-55
Identity = 112/158 (70.89%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS  K+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSI 159
           VL+  KP KG+L + E  KLK +++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of CmoCh18G000140 vs. TAIR 10
Match: AT5G08180.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-55
Identity = 112/158 (70.89%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS  K+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSI 159
           VL+  KP KG+L + E  KLK +++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of CmoCh18G000140 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-14
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG   F V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILL 67

Query: 87  HVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLIQTKPNKGELGSTEQEKLKAEFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     +          S E  +LK++   
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVSEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of CmoCh18G000140 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-14
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG   F V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLIQTKPNKGELGSTEQEKLKAEFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     +          S E  +LK++   
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVSEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of CmoCh18G000140 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-14
Identity = 41/128 (32.03%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVIT 86
           P A PLA  +L    + LV++A  YK LK+G  E  K++ RG   F V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLIQTKPNKGELGSTEQEKLKAEFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     +          S E  +LK++   
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVSEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

The following BLAST results are available for this feature:

BLAST of CmoCh18G000140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEY9	1.9e-54	70.89	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana O...	[more]
P32495	1.4e-33	48.72	H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain...	[more]
Q9P7H0	1.0e-28	44.16	H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strai...	[more]
Q8I7X7	4.5e-24	39.10	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri...	[more]
Q6PBV6	4.5e-24	44.44	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio OX=7955 GN...	[more]

BLAST of CmoCh18G000140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GTK9	1.8e-79	100.00	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1	[more]
A0A6J1K350	4.3e-78	98.74	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1	[more]
A0A5D3BKS6	2.0e-75	94.34	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001...	[more]
A0A1S3C0C8	2.0e-75	94.34	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1	[more]
A0A0A0LVP3	6.5e-74	93.71	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1	[more]

BLAST of CmoCh18G000140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955313.1	3.6e-79	100.00	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]	[more]
XP_023541121.1	1.1e-78	98.74	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pe...	[more]
XP_022994544.1	8.9e-78	98.74	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima]	[more]
XP_008454886.1	4.2e-75	94.34	PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo]...	[more]
XP_038894923.1	4.2e-75	93.71	H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida]	[more]

BLAST of CmoCh18G000140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08180.1	1.3e-55	70.89	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G08180.2	1.3e-55	70.89	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	4.4e-14	32.81	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.1	4.4e-14	32.81	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	7.4e-14	32.03	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 101..113 score: 43.08 coord: 40..55 score: 41.25 coord: 57..67 score: 43.64 coord: 27..40 score: 50.0
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 54..68 score: 36.97 coord: 73..86 score: 29.87 coord: 89..99 score: 42.98 coord: 99..113 score: 36.06
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 19..155 e-value: 4.0E-49 score: 167.5
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 20..133
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 42..126 e-value: 3.7E-23 score: 81.1
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..158
None	No IPR available	PANTHER	PTHR23105:SF146	SUBFAMILY NOT NAMED	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G000140.1	CmoCh18G000140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding