CmoCh17G013810 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G013810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF 3339)
Location	Cmo_Chr17: 10715301 .. 10715876 (-)
RNA-Seq Expression	CmoCh17G013810
Synteny	CmoCh17G013810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTGGGGGCCGGTTTTTGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGTCTGCTGTTTCAGCTTCCTGGCAACCGCAGGTGCTTGGAGTTCGGCAACTTTCACACCAGTGCTGCTGCTATCATCGTTCATTCAGTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTTGCCATCAAGGTTCATCTCTATATTGGTTCCTAATTCTTCCCCGATGCAAACACTCCCCCCTCCAGGATCTCCTCTACATTGGTTCCTAAATCTTCCCCCCTGATGCGACATTTCTTGTTTGTTTCTAATTCTCTAATGTGATGTTATTTGAGTTCTTCGTTTTCTTTTCCGTCGATGTCCTACAGTTTTCCATGTGTGTGAGCCAAATATCGATCTTGGTGTAACATATAGGTGATTTTATCAATTCAAAGCTACGATGATCTTGAGACTGTGTTGGCAAGGATTTTTTTTTTTTTTCCTTTTTTCCTCCCTTTTTTTTTTTTTATTGCCCAACAGGCATTTCAAACCGTGGCAGTTACATACGATCAAAAGGCTAGAAAACAATGGAAGAAATGA

mRNA sequence

ATGGCTGATTGGGGGCCGGTTTTTGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGTCTGCTGTTTCAGCTTCCTGGCAACCGCAGGTGCTTGGAGTTCGGCAACTTTCACACCAGTGCTGCTGCTATCATCGTTCATTCAGTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTTGCCATCAAGGCATTTCAAACCGTGGCAGTTACATACGATCAAAAGGCTAGAAAACAATGGAAGAAATGA

Coding sequence (CDS)

ATGGCTGATTGGGGGCCGGTTTTTGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGTCTGCTGTTTCAGCTTCCTGGCAACCGCAGGTGCTTGGAGTTCGGCAACTTTCACACCAGTGCTGCTGCTATCATCGTTCATTCAGTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTTGCCATCAAGGCATTTCAAACCGTGGCAGTTACATACGATCAAAAGGCTAGAAAACAATGGAAGAAATGA

Protein sequence

MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLLAIKAFQTVAVTYDQKARKQWKK

Homology

[Close]

BLAST of CmoCh17G013810 vs. ExPASy TrEMBL
Match: A0A6J1GNZ8 (uncharacterized protein LOC111455815 OS=Cucurbita moschata OX=3662 GN=LOC111455815 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIKAFQTVAVTYDQKARKQWKK 83
          AIKAFQTVAVTYDQKARKQWKK
Sbjct: 61 AIKAFQTVAVTYDQKARKQWKK 82

[Close]

BLAST of CmoCh17G013810 vs. ExPASy TrEMBL
Match: A0A6J1JUR0 (uncharacterized protein LOC111488037 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488037 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIKAFQTVAVTYDQKARKQWKK 83
          AIKAFQTVAVTYDQK RKQWKK
Sbjct: 61 AIKAFQTVAVTYDQKTRKQWKK 82

[Close]

BLAST of CmoCh17G013810 vs. ExPASy TrEMBL
Match: A0A6J1JSS9 (uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488037 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh17G013810 vs. ExPASy TrEMBL
Match: A0A0A0KAG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh17G013810 vs. ExPASy TrEMBL
Match: A0A6J1KVP8 (uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.4e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh17G013810 vs. NCBI nr
Match: XP_022953200.1 (uncharacterized protein LOC111455815 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIKAFQTVAVTYDQKARKQWKK 83
          AIKAFQTVAVTYDQKARKQWKK
Sbjct: 61 AIKAFQTVAVTYDQKARKQWKK 82

[Close]

BLAST of CmoCh17G013810 vs. NCBI nr
Match: XP_022991384.1 (uncharacterized protein LOC111488037 isoform X1 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIKAFQTVAVTYDQKARKQWKK 83
          AIKAFQTVAVTYDQK RKQWKK
Sbjct: 61 AIKAFQTVAVTYDQKTRKQWKK 82

[Close]

BLAST of CmoCh17G013810 vs. NCBI nr
Match: XP_022991385.1 (uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785.1 uncharacterized protein LOC111778992 [Cucurbita pepo subsp. pepo] >KAG7014656.1 hypothetical protein SDJN02_24835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 3.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh17G013810 vs. NCBI nr
Match: XP_011656810.1 (uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical protein Csa_005508 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh17G013810 vs. NCBI nr
Match: XP_038875875.1 (uncharacterized protein LOC120068234 [Benincasa hispida])

HSP 1 Score: 126.7 bits (317), Expect = 9.1e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+IIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh17G013810 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 101.3 bits (251), Expect = 3.8e-22
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M+DWGPV V VILFV+LTPGLLFQLPG ++ +EFGNF TSA ++IVHS+LYF L+CVFLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIK 64
          A+K
Sbjct: 61 ALK 63

[Close]

BLAST of CmoCh17G013810 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-19
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPV VAVILFVLLTPGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIK 64
          AI+
Sbjct: 61 AIR 63

[Close]

BLAST of CmoCh17G013810 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 2.0e-18
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M DWGPVFVAV LFVLLTPGLL Q+PG  R +EFG F TS  ++IVH+++YF L+C+ LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AIK 64
          A++
Sbjct: 61 ALQ 63

[Close]

BLAST of CmoCh17G013810 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-18
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPV +AVILFV+L+PGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AI 63
          AI
Sbjct: 61 AI 62

[Close]

BLAST of CmoCh17G013810 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 81.3 bits (199), Expect = 4.1e-16
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 2  ADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLLA 61
          ADWGPV VAV+LFV+L+PGLLFQLP  RR LE GN  TS  +I+VH++L+F +I + ++A
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IK 64
          I+
Sbjct: 64 IQ 65

The following BLAST results are available for this feature:

BLAST of CmoCh17G013810 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G013810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNZ8	6.6e-38	100.00	uncharacterized protein LOC111455815 OS=Cucurbita moschata OX=3662 GN=LOC1114558...	[more]
A0A6J1JUR0	1.9e-37	98.78	uncharacterized protein LOC111488037 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JSS9	1.5e-26	100.00	uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KAG8	2.6e-26	96.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1	[more]
A0A6J1KVP8	4.4e-26	96.83	uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623...	[more]

BLAST of CmoCh17G013810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953200.1	1.4e-37	100.00	uncharacterized protein LOC111455815 [Cucurbita moschata]	[more]
XP_022991384.1	3.9e-37	98.78	uncharacterized protein LOC111488037 isoform X1 [Cucurbita maxima]	[more]
XP_022991385.1	3.1e-26	100.00	uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785...	[more]
XP_011656810.1	5.3e-26	96.83	uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical ...	[more]
XP_038875875.1	9.1e-26	96.83	uncharacterized protein LOC120068234 [Benincasa hispida]	[more]

BLAST of CmoCh17G013810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	3.8e-22	73.02	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	3.0e-19	66.67	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	2.0e-18	63.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G63500.1	3.3e-18	62.90	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	4.1e-16	59.68	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..63 e-value: 9.8E-32 score: 109.0
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR33128:SF62	SUBFAMILY NOT NAMED	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G013810.1	CmoCh17G013810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane