CmoCh17G013630 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G013630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPyruvate dehydrogenase E1 component subunit beta
LocationCmo_Chr17: 10594921 .. 10595583 (-)
RNA-Seq ExpressionCmoCh17G013630
SyntenyCmoCh17G013630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTGGTGTATCAGATATTGTTGTTTTTGTTGATATTGATGTTGATGTCGTTTGTTTTCCTTTTCCTATTCCCCTTATCTTGCTGAAGTTGAAAGTGAAACTGGTTGGAAATTGCATGTCGGTGAATTGATGTCTGTGAGATACTTTGATGTTTGAAATGGAACTGTGATTTGGATCGTTTGAAATGTATAAGCTTTTGTTTTTCGTTTCGTAGAGCTGTCTTTCGCGCGAGAAAAATGTGGGGAATCGTTCGGAAAAAAGTTGGAGCTGGAGCCTCCTGTATTCTGGTTCTGTTCCATGCACTTGAATGAAATTTCTCTTTGCATTGGATAGAAGATTTTTTTCCAGTGATTTTTATGCTTTCTGTGTGCGCGTTTTTTTTTTCTTTCCAGACTTCCGGCCAGGCTTTGCAGAGGCTTCGCCCTGCCGCCTCAGCATCGAGATACTATTCATCTGCCGCAAAAGAGGTAGTATACTGTCTCGTGTCCTTCGATACTTTATCTATTCTTATTCAGCCTCAGCTGGTGTTTTTCGTAGTTCCAATACATCACGTCTTTCTTGCTTTAGGGTTCGGGTTGTTAGGGACCATTCTTCGATATTGTATGCTGAAACGTTTTAAGAGCACAGTAATTTGGTTTCTTCTCATCAATACTGGTTAA

mRNA sequence

ATGCATCTGGTGTATCAGATATTGTTAGCTGTCTTTCGCGCGAGAAAAATGTGGGGAATCGTTCGGAAAAAAGTTGGAGCTGGAGCCTCCTGTATTCTGACTTCCGGCCAGGCTTTGCAGAGGCTTCGCCCTGCCGCCTCAGCATCGAGATACTATTCATCTGCCGCAAAAGAGGTAGTATACTGTCTCGTGTCCTTCGATACTTTATCTATTCTTATTCAGCCTCAGCTGGTGTTTTTCGTAGTTCCAATACATCACGTCTTTCTTGCTTTAGGGTTCGGGTTGTTAGGGACCATTCTTCGATATTGTATGCTGAAACGTTTTAAGAGCACAGTAATTTGGTTTCTTCTCATCAATACTGGTTAA

Coding sequence (CDS)

ATGCATCTGGTGTATCAGATATTGTTAGCTGTCTTTCGCGCGAGAAAAATGTGGGGAATCGTTCGGAAAAAAGTTGGAGCTGGAGCCTCCTGTATTCTGACTTCCGGCCAGGCTTTGCAGAGGCTTCGCCCTGCCGCCTCAGCATCGAGATACTATTCATCTGCCGCAAAAGAGGTAGTATACTGTCTCGTGTCCTTCGATACTTTATCTATTCTTATTCAGCCTCAGCTGGTGTTTTTCGTAGTTCCAATACATCACGTCTTTCTTGCTTTAGGGTTCGGGTTGTTAGGGACCATTCTTCGATATTGTATGCTGAAACGTTTTAAGAGCACAGTAATTTGGTTTCTTCTCATCAATACTGGTTAA

Protein sequence

MHLVYQILLAVFRARKMWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEVVYCLVSFDTLSILIQPQLVFFVVPIHHVFLALGFGLLGTILRYCMLKRFKSTVIWFLLINTG
Homology
[Close]
BLAST of CmoCh17G013630 vs. ExPASy TrEMBL
Match: A0A6J1JUS0 (Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111488043 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. ExPASy TrEMBL
Match: A0A6J1GNY3 (Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111456186 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. ExPASy TrEMBL
Match: A0A6J1D6U9 (Pyruvate dehydrogenase E1 component subunit beta OS=Momordica charantia OX=3673 GN=LOC111017478 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGI+R+KVGAG S IL SGQ+LQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIIRQKVGAGGSSILISGQSLQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. ExPASy TrEMBL
Match: A0A6J1KQ71 (Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111497694 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-09
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVR+K GA AS IL SGQ+LQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRQKAGAAASSILISGQSLQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. ExPASy TrEMBL
Match: A0A6J1H8M4 (Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111461100 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-09
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVR+K GA AS IL SGQ+LQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRQKAGAAASSILISGQSLQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. NCBI nr
Match: KAG6576110.1 (Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 8  LLAVFRARKMWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          L AVFRARKMWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKE+
Sbjct: 26 LRAVFRARKMWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEM 77

[Close]
BLAST of CmoCh17G013630 vs. NCBI nr
Match: XP_022953745.1 (pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita moschata] >XP_022953746.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita moschata] >XP_022953747.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita moschata] >XP_022953748.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. NCBI nr
Match: XP_023548371.1 (pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023548372.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023548373.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023548374.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. NCBI nr
Match: XP_022991392.1 (pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [Cucurbita maxima] >XP_022991393.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [Cucurbita maxima] >XP_022991394.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [Cucurbita maxima] >XP_022991396.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [Cucurbita maxima] >XP_022991397.1 pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Cucurbita maxima])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEM 43

[Close]
BLAST of CmoCh17G013630 vs. NCBI nr
Match: XP_022148931.1 (pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-09
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 17 MWGIVRKKVGAGASCILTSGQALQRLRPAASASRYYSSAAKEV 60
          MWGI+R+KVGAG S IL SGQ+LQRLRPAASASRYYSSAAKE+
Sbjct: 1  MWGIIRQKVGAGGSSILISGQSLQRLRPAASASRYYSSAAKEM 43

The following BLAST results are available for this feature:
BLAST of CmoCh17G013630 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G013630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JUS08.3e-1397.67Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1GNY38.3e-1397.67Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1D6U91.5e-0983.72Pyruvate dehydrogenase E1 component subunit beta OS=Momordica charantia OX=3673 ... [more]
A0A6J1KQ715.5e-0983.72Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1H8M45.5e-0983.72Pyruvate dehydrogenase E1 component subunit beta OS=Cucurbita moschata OX=3662 G... [more]
BLAST of CmoCh17G013630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576110.11.9e-1696.15Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial, partial [Cucu... [more]
XP_022953745.11.7e-1297.67pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita mos... [more]
XP_023548371.11.7e-1297.67pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucurbita pep... [more]
XP_022991392.11.7e-1297.67pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [Cu... [more]
XP_022148931.13.0e-0983.72pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Momordica cha... [more]
BLAST of CmoCh17G013630 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G013630.1CmoCh17G013630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006086 acetyl-CoA biosynthetic process from pyruvate
biological_process GO:0006096 glycolytic process
cellular_component GO:0005967 mitochondrial pyruvate dehydrogenase complex
molecular_function GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity