CmoCh17G013440 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G013440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S27
Location	Cmo_Chr17: 10500280 .. 10501095 (-)
RNA-Seq Expression	CmoCh17G013440
Synteny	CmoCh17G013440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGACGGTTATACCCTCTCCGAGTGCGTAGCCCTAGGCATTTCAAAAGTTAAAGGCTGAGATTTGTTTCTAAACAAATCCAACGGTGTTCACAGTTTCCAGCCGCTCCTTTATATTCGTCCTAGACGGCGCTCTGCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTAAACTCCAAATTTCCCTGCTACATTTGGATTATGCCTCTTCATCTCTTCCGAATTCGGATCATATAATTTTCACTTTCTTTCACGCTATTGACAGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCGTGTTCCTCCTTTAGACTTTTTTATTTTTTAATCTAATCGTTACTTTGATAATGGTGATCGAGCTGTTCTGTTAATTCTGAATGCAGGACGTGAAGTGTCAGGGTTGCTTTAACATGTAAGTATTCATCTTTTTCATGTATTATGGTTACATGTACTTTGTGTTTTCCCTATAGGGTTGGATATTTAGGTTGTTTATTAAGTGAGTGATGGCATAAAACTCTTTGAATGGAAAACAGAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTCAGAAGAAAGGGCGACTAA

mRNA sequence

ATGAATGGACGTTTCCAGCCGCTCCTTTATATTCGTCCTAGACGGCGCTCTGCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTCAGAAGAAAGGGCGACTAA

Coding sequence (CDS)

ATGAATGGACGTTTCCAGCCGCTCCTTTATATTCGTCCTAGACGGCGCTCTGCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTCAGAAGAAAGGGCGACTAA

Protein sequence

MNGRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Homology

[Close]

BLAST of CmoCh17G013440 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-44
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRKGD 137
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh17G013440 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 9.2e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRKGD 137
           CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh17G013440 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-41
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRK 135
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmoCh17G013440 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-41
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRK 135
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmoCh17G013440 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-37
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRKGD 137
           C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of CmoCh17G013440 vs. ExPASy TrEMBL
Match: A0A6J1JM72 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 6.8e-72
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   GRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNP 62
           GRFQPLLYI PRRRS+PVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNP
Sbjct: 16  GRFQPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNP 75

Query: 63  PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR 122
           PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR
Sbjct: 76  PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR 135

Query: 123 ARLTEGCSFRRKGD 137
           ARLTEGCSFRRKGD
Sbjct: 136 ARLTEGCSFRRKGD 149

[Close]

BLAST of CmoCh17G013440 vs. ExPASy TrEMBL
Match: A0A6J1GP15 (40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.5e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 5   FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPA 64
           FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPA
Sbjct: 78  FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPA 137

Query: 65  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 124
           ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR
Sbjct: 138 ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 197

Query: 125 LTEGCSFRRKGD 137
           LTEGCSFRRKGD
Sbjct: 198 LTEGCSFRRKGD 209

[Close]

BLAST of CmoCh17G013440 vs. ExPASy TrEMBL
Match: A0A0A0K9G0 (40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.0e-49
Identity = 104/134 (77.61%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 7   PLLYIRPRRRSAPVSLHSSYRPVSLANSR----WDFRVRDPDGCFLIIMVLQNDIDLLNP 66
           PLLYI PRRRS+P+S  SS+R   + +        F +       LIIMVLQNDIDLLNP
Sbjct: 13  PLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAP-LPLIIMVLQNDIDLLNP 72

Query: 67  PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR 126
           PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR
Sbjct: 73  PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR 132

Query: 127 ARLTEGCSFRRKGD 137
           A+LTEGCSFRRKGD
Sbjct: 133 AKLTEGCSFRRKGD 145

[Close]

BLAST of CmoCh17G013440 vs. ExPASy TrEMBL
Match: W9RJV2 (40S ribosomal protein S27 OS=Morus notabilis OX=981085 GN=L484_005973 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.0e-43
Identity = 95/132 (71.97%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 13  PRRRSAPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPA 72
           PRRR    S HS+ R  +  ++   W      P     I        VLQNDIDLLNPPA
Sbjct: 74  PRRRLTSASQHSAARRTTTPSTGEHWACGGSPPHSSPTIFRERKNENVLQNDIDLLNPPA 133

Query: 73  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 132
           ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR
Sbjct: 134 ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 193

Query: 133 LTEGCSFRRKGD 137
           LTEGCSFRRKGD
Sbjct: 194 LTEGCSFRRKGD 205

[Close]

BLAST of CmoCh17G013440 vs. ExPASy TrEMBL
Match: A0A6J1JTM3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRKGD 137
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh17G013440 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   GRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNP 62
           GRFQPLLYI PRRRS+PVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNP
Sbjct: 16  GRFQPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNP 75

Query: 63  PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR 122
           PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR
Sbjct: 76  PAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGR 135

Query: 123 ARLTEGCSFRRKGD 137
           ARLTEGCSFRRKGD
Sbjct: 136 ARLTEGCSFRRKGD 149

[Close]

BLAST of CmoCh17G013440 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 278.5 bits (711), Expect = 3.1e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 5   FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPA 64
           FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPA
Sbjct: 78  FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPA 137

Query: 65  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 124
           ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR
Sbjct: 138 ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 197

Query: 125 LTEGCSFRRKGD 137
           LTEGCSFRRKGD
Sbjct: 198 LTEGCSFRRKGD 209

[Close]

BLAST of CmoCh17G013440 vs. NCBI nr
Match: KAF5449188.1 (hypothetical protein F2P56_029664, partial [Juglans regia])

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-43
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 47  FLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV 106
           FL  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
Sbjct: 25  FLFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV 84

Query: 107 VCGNCQTVLCQPTGGRARLTEGCSFRRKGD 137
           VCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 85  VCGNCQTVLCQPTGGRARLTEGCSFRRKGD 114

[Close]

BLAST of CmoCh17G013440 vs. NCBI nr
Match: KAG6592828.1 (40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-43
Identity = 88/93 (94.62%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 44  DGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ 103
           D   LI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ
Sbjct: 287 DSSLLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ 346

Query: 104 TVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 137
           TVVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 347 TVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 379

[Close]

BLAST of CmoCh17G013440 vs. NCBI nr
Match: EXB94378.1 (40S ribosomal protein S27-2 [Morus notabilis])

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-42
Identity = 95/132 (71.97%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 13  PRRRSAPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPA 72
           PRRR    S HS+ R  +  ++   W      P     I        VLQNDIDLLNPPA
Sbjct: 74  PRRRLTSASQHSAARRTTTPSTGEHWACGGSPPHSSPTIFRERKNENVLQNDIDLLNPPA 133

Query: 73  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 132
           ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR
Sbjct: 134 ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 193

Query: 133 LTEGCSFRRKGD 137
           LTEGCSFRRKGD
Sbjct: 194 LTEGCSFRRKGD 205

[Close]

BLAST of CmoCh17G013440 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-45
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRKGD 137
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh17G013440 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-42
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRK 135
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmoCh17G013440 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-42
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRK 135
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmoCh17G013440 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 150.6 bits (379), Expect = 9.1e-37
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 51  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 110
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 111 CQTVLCQPTGGRARLTEGCSFRRKGD 137
           CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of CmoCh17G013440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	2.0e-44	96.51	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
Q96564	9.2e-42	94.19	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
O64650	2.0e-41	92.86	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q8L953	2.7e-41	94.05	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	5.2e-37	84.88	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of CmoCh17G013440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM72	6.8e-72	98.51	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1	[more]
A0A6J1GP15	1.5e-71	100.00	40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=...	[more]
A0A0A0K9G0	8.0e-49	77.61	40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1	[more]
W9RJV2	5.0e-43	71.97	40S ribosomal protein S27 OS=Morus notabilis OX=981085 GN=L484_005973 PE=3 SV=1	[more]
A0A6J1JTM3	1.1e-42	100.00	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1	[more]

BLAST of CmoCh17G013440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991567.1	1.4e-71	98.51	40S ribosomal protein S27-2-like [Cucurbita maxima]	[more]
XP_022953224.1	3.1e-71	100.00	uncharacterized protein LOC111455834 [Cucurbita moschata]	[more]
KAF5449188.1	3.6e-43	97.78	hypothetical protein F2P56_029664, partial [Juglans regia]	[more]
KAG6592828.1	3.6e-43	94.62	40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
EXB94378.1	1.0e-42	71.97	40S ribosomal protein S27-2 [Morus notabilis]	[more]

BLAST of CmoCh17G013440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	1.4e-45	96.51	ribosomal protein S27	[more]
AT2G45710.1	1.5e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	1.9e-42	94.05	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	9.1e-37	81.40	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 80..134 e-value: 7.3E-27 score: 92.8
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 50..135
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 88..120
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 74..134 score: 16.744337
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 55..135 e-value: 5.8E-49 score: 165.9
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 50..135
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 80..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G013440.1	CmoCh17G013440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome