CmoCh17G012410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G012410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RPM1-interacting protein 4-like
Location	Cmo_Chr17: 9849016 .. 9850924 (+)
RNA-Seq Expression	CmoCh17G012410
Synteny	CmoCh17G012410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGAGTTCTTCTATTTTCATCATCTTCTTGTTCTTCCTTGTTCTTCCTGTTCTTTTGACTTTCCTTTCTGTTTGGTTGCTGAGAAAATCCGAGAAAAATTAAGAGAAAATTGGGATTTTGTTGTTTTTAACTGTTTTGTTGAGCGGCTGTTGTACGGTACATCTGAAACTGAATTTGTTCTGTAGATCAGTTTTAATCCATCGTTTGAAGATGGGGTTTCTCTGTTCTTTGATTTAACCTTTTTGACTTTTTTTTTTTAACTCAGTGCAGTAATTGTTTAGGTAAGTGTCTAAAGATTTTAGTTCTTTTTGTTATGAATCTCGAGAATAGCATGATGTTGTCTACTAATCTACACAATGGTATGGTGTTATTTACTTTGACCGTAAGCTCCGACGGTTTTTGTTTTTGTTTATAAATTCATGATCATCCTCTAAATTAGTCGGTGAGATTCTCATCCGACAATTCTCTCCTCGAAAAAGTATATCATAGAATCTCCTCTGATGCCTATAGAGCCCTTGAACAGCTTCTCCTTAGTTGAGGCTCGATTCCTTTCTTTGGAGTCCTCACGCCCTTTGTTAGAGTCTCCCATGAGGCCTATAGTGCCCTCAAATAGCATCCCCTTAGTTGAGGCCGGACTCCTTTCTTTAGAGCCTTCCCACCTTTTGTTAGAGTCTCCTTTGAGACCTATAGAGCCCTTGAACAACCTCTGCTTAATTGAGACTCAACTCATTTTTTTAGAGGCCCTTGAACAAAGTAAACCTTTTGTTTGACACTTGAGTCAGGTTTTTTACTACACATTAGAGACTCACAACTTTTTTGTTTGATATTTGAGGATTTTATTTACATGGCTAAGTTAAAAGTATGACTCGATACAATGTTAGGAACCATAATTTACATGACTGAACGTATTGTCCACTTTAAGCATAAGCTTTCGTGATTTTGTTTTTGGTTTCTCCAAAATAACCTGTATCTATGTATTCTTTGCTTATAAATTTATGATCATCATCTAAATCATCTAAATTAGCGAATGTGAAATTCCCTCCAAACAATTTTCGAATGATTCACAATTCAATCAAATTTTGTTTTGAAAAATGGGTTTTGTTGGGACAGCAACGATCACACGTACCAGCTTTTGGAAATTGGGAAAACGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAACGATCCTGAGGAATATCCAGAGATGTTCGCCGACAACTCCCATGAAGCTCCTCCGGTTAAACCCAACATTCCGGCACCAAAACCCACCACCCACGAGAAGAAACAGAGCCGCGAAGACGACGGTTATCACCCCTACGCCAACTCCCCTGGCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGCTCAGAGTATAGCATCGACCGCTCTCCCCTCCACCGCCACGCAAAGCCATCGGGAAGAGAGAGCCCCGTGGTGGAGGGCAAGGGCTTCGACGGCGGCCATGGCAACCGTGGGAAGACCAGAATGAAGCCGGATGCTGTAAGCTTTTTGCCTTTTTTAACTTCCTTGTTCGATTATTCACCAATCAAAACAGAACCCACAAATAAATTTTAAATCTTTCTTCCTTTGGCGTTGCATTTTGAAATGGTACATTTTGGTGGTGCAGCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCGTGGGATGTGAACAATCCGGCGTCGGCCGACGGTTTTACCCACATTTTTGGTAAAGTCAGGGAGGAGAAGATGGGGCCGGGAACCCCGCCGCCGCCGCATTCTTCTTCGCCGTACAACAACGTTCATAACCGAAGACCCGACGACAGCGCCAAGGTAATTCAGCTCCCTTTCTTTTCATTCTTATTAAATAAATTATAA

mRNA sequence

ATGGCGTGCAGTAATTGTTTAGCTTTTGGAAATTGGGAAAACGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAACGATCCTGAGGAATATCCAGAGATGTTCGCCGACAACTCCCATGAAGCTCCTCCGGTTAAACCCAACATTCCGGCACCAAAACCCACCACCCACGAGAAGAAACAGAGCCGCGAAGACGACGGTTATCACCCCTACGCCAACTCCCCTGGCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGCTCAGAGTATAGCATCGACCGCTCTCCCCTCCACCGCCACGCAAAGCCATCGGGAAGAGAGAGCCCCGTGGTGGAGGGCAAGGGCTTCGACGGCGGCCATGGCAACCGTGGGAAGACCAGAATGAAGCCGGATGCTCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCGTGGGATGTGAACAATCCGGCGTCGGCCGACGGTTTTACCCACATTTTTGGTAAAGTCAGGGAGGAGAAGATGGGGCCGGGAACCCCGCCGCCGCCGCATTCTTCTTCGCCGTACAACAACGTTCATAACCGAAGACCCGACGACAGCGCCAAGGTAATTCAGCTCCCTTTCTTTTCATTCTTATTAAATAAATTATAA

Coding sequence (CDS)

ATGGCGTGCAGTAATTGTTTAGCTTTTGGAAATTGGGAAAACGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAACGATCCTGAGGAATATCCAGAGATGTTCGCCGACAACTCCCATGAAGCTCCTCCGGTTAAACCCAACATTCCGGCACCAAAACCCACCACCCACGAGAAGAAACAGAGCCGCGAAGACGACGGTTATCACCCCTACGCCAACTCCCCTGGCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGCTCAGAGTATAGCATCGACCGCTCTCCCCTCCACCGCCACGCAAAGCCATCGGGAAGAGAGAGCCCCGTGGTGGAGGGCAAGGGCTTCGACGGCGGCCATGGCAACCGTGGGAAGACCAGAATGAAGCCGGATGCTCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCGTGGGATGTGAACAATCCGGCGTCGGCCGACGGTTTTACCCACATTTTTGGTAAAGTCAGGGAGGAGAAGATGGGGCCGGGAACCCCGCCGCCGCCGCATTCTTCTTCGCCGTACAACAACGTTCATAACCGAAGACCCGACGACAGCGCCAAGGTAATTCAGCTCCCTTTCTTTTCATTCTTATTAAATAAATTATAA

Protein sequence

MACSNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESPVVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNRRPDDSAKVIQLPFFSFLLNKL

Homology

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BLAST of CmoCh17G012410 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-24
Identity = 85/217 (39.17%), Postives = 112/217 (51.61%), Query Frame = 0


Query: 1   MACSNCLAFGNWENEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFADNSHEAPP- 60
           MA SN   FGNWE E NVPYT +FDKARK R  G  I NPND    PE  +D+  +APP 
Sbjct: 1   MARSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPND----PEYNSDSQSQAPPH 60

Query: 61  -----VKPNIPAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSG-----SEYSIDR 120
                 KP        + E  +SRE+     + ++ G     + K+ G     + Y  ++
Sbjct: 61  PPSSRTKPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYD-NK 120

Query: 121 SPLHRHAKPSGRESPVVEGKGFDGGHGNRGKTRMKP------DAPEG-TAVPKFGSWDVN 180
           SPLH+++              +DG     GK+R KP      ++PE  T VPKFG WD N
Sbjct: 121 SPLHKNS--------------YDG----TGKSRPKPTNLRADESPEKVTVVPKFGDWDEN 180

Query: 181 NPASADGFTHIFGKVREEK-----MGPGTPPPPHSSS 194
           NP+SADG+THIF KVREE+     +   +  P H SS
Sbjct: 181 NPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSS 194

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BLAST of CmoCh17G012410 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 148 EGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSS 194
           +G  +PKFG WDVN+PASA+GFT IF K R+EK   G P  P  SS
Sbjct: 4   KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 49

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BLAST of CmoCh17G012410 vs. ExPASy TrEMBL
Match: A0A6J1JWD7 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488479 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.5e-116
Identity = 202/205 (98.54%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 63
           S+  AFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI
Sbjct: 5   SHVPAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 64

Query: 64  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 123
           PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP
Sbjct: 65  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 124

Query: 124 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 183
           VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP
Sbjct: 125 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 184

Query: 184 GTPPPPHSSSPYNNVHNRRPDDSAK 209
           GTPPPPHSSSPYNNVHNRRPDDSAK
Sbjct: 185 GTPPPPHSSSPYNNVHNRRPDDSAK 209

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BLAST of CmoCh17G012410 vs. ExPASy TrEMBL
Match: A0A6J1GP44 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111455855 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.5e-116
Identity = 202/205 (98.54%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 63
           S+  AFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI
Sbjct: 5   SHVPAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 64

Query: 64  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 123
           PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP
Sbjct: 65  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 124

Query: 124 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 183
           VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP
Sbjct: 125 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 184

Query: 184 GTPPPPHSSSPYNNVHNRRPDDSAK 209
           GTPPPPHSSSPYNNVHNRRPDDSAK
Sbjct: 185 GTPPPPHSSSPYNNVHNRRPDDSAK 209

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BLAST of CmoCh17G012410 vs. ExPASy TrEMBL
Match: A0A5A7SK62 (RPM1-interacting protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G001050 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 161/210 (76.67%), Postives = 183/210 (87.14%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 63
           S+  AFGNWE+EGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++  DNSHEAPP KP++
Sbjct: 25  SHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDILIDNSHEAPPSKPSL 84

Query: 64  ----PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSG 123
               P PKPTTHE++ SRED G+ PYANSPG+RENP R+QSGS+YSIDRSPLHR AKPS 
Sbjct: 85  KDDTPPPKPTTHERRHSREDGGFRPYANSPGNRENPGRRQSGSDYSIDRSPLHRQAKPSA 144

Query: 124 RESPVVEGKGFDGGHGNRGKTRMKPDA-PEGTAVPKFGSWDVNNPASADGFTHIFGKVRE 183
           R+S + EGK F+G + NRGKT+ K ++ PEGTAVPKFGSWDVNNPASADGFTHIFGKVRE
Sbjct: 145 RDSSMTEGKSFEGSYDNRGKTKTKNNSPPEGTAVPKFGSWDVNNPASADGFTHIFGKVRE 204

Query: 184 EKMGPGTPPPPHSSSPYNNVHNRRPDDSAK 209
           E++GPGTPPP HSSSPYNN +NRRPDDS K
Sbjct: 205 ERLGPGTPPPQHSSSPYNNANNRRPDDSVK 234

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BLAST of CmoCh17G012410 vs. ExPASy TrEMBL
Match: A0A1S3C6U9 (RPM1-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103497569 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 161/210 (76.67%), Postives = 183/210 (87.14%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 63
           S+  AFGNWE+EGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++  DNSHEAPP KP++
Sbjct: 5   SHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDILIDNSHEAPPSKPSL 64

Query: 64  ----PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSG 123
               P PKPTTHE++ SRED G+ PYANSPG+RENP R+QSGS+YSIDRSPLHR AKPS 
Sbjct: 65  KDDTPPPKPTTHERRHSREDGGFRPYANSPGNRENPGRRQSGSDYSIDRSPLHRQAKPSA 124

Query: 124 RESPVVEGKGFDGGHGNRGKTRMKPDA-PEGTAVPKFGSWDVNNPASADGFTHIFGKVRE 183
           R+S + EGK F+G + NRGKT+ K ++ PEGTAVPKFGSWDVNNPASADGFTHIFGKVRE
Sbjct: 125 RDSSMTEGKSFEGSYDNRGKTKTKNNSPPEGTAVPKFGSWDVNNPASADGFTHIFGKVRE 184

Query: 184 EKMGPGTPPPPHSSSPYNNVHNRRPDDSAK 209
           E++GPGTPPP HSSSPYNN +NRRPDDS K
Sbjct: 185 ERLGPGTPPPQHSSSPYNNANNRRPDDSVK 214

[Close]

BLAST of CmoCh17G012410 vs. ExPASy TrEMBL
Match: A0A6J1CY94 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111015304 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.2e-88
Identity = 166/220 (75.45%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 9   FGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPK- 68
           FGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++F+DNSH   P  P++P PK 
Sbjct: 12  FGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDVFSDNSHSHEP-PPSMPMPKD 71

Query: 69  --------PTTHEKKQSREDD-GYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPS 128
                   PT HE+++SRED     PYANSPGHRENP R+QSGSEYSIDRSPLHRHAKP+
Sbjct: 72  DPQTLKPTPTAHERRRSREDGASRQPYANSPGHRENPGRRQSGSEYSIDRSPLHRHAKPT 131

Query: 129 GRESPVVEGKGFDGGHGNRGKTRMKP----DAPEGTAVPKFGSWDVNNPASADGFTHIFG 188
           GRESPV EGK  DGGHGNRGKTRMKP    DAPEGTAVPKFG WDVNNPASADGFTHIFG
Sbjct: 132 GRESPVAEGKSLDGGHGNRGKTRMKPVLRDDAPEGTAVPKFGXWDVNNPASADGFTHIFG 191

Query: 189 KVREEKMGPGTPPPPHSSSPYNNVHNRRPDDSAKVIQLPF 215
           KVREE++GPGTPP  HSSSPYNNVHN++ D +AK    P+
Sbjct: 192 KVREERIGPGTPPVVHSSSPYNNVHNQKTDHNAKGCCFPW 230

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BLAST of CmoCh17G012410 vs. NCBI nr
Match: XP_022953250.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022991999.1 RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 427.9 bits (1099), Expect = 5.2e-116
Identity = 202/205 (98.54%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 63
           S+  AFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI
Sbjct: 5   SHVPAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 64

Query: 64  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 123
           PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP
Sbjct: 65  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 124

Query: 124 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 183
           VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP
Sbjct: 125 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 184

Query: 184 GTPPPPHSSSPYNNVHNRRPDDSAK 209
           GTPPPPHSSSPYNNVHNRRPDDSAK
Sbjct: 185 GTPPPPHSSSPYNNVHNRRPDDSAK 209

[Close]

BLAST of CmoCh17G012410 vs. NCBI nr
Match: KAG6575990.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 425.6 bits (1093), Expect = 2.6e-115
Identity = 201/205 (98.05%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 63
           S+  AFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI
Sbjct: 5   SHVPAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 64

Query: 64  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 123
           PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP
Sbjct: 65  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 124

Query: 124 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 183
           VVEGKG DGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP
Sbjct: 125 VVEGKGLDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 184

Query: 184 GTPPPPHSSSPYNNVHNRRPDDSAK 209
           GTPPPPHSSSPYNNVHNRRPDDSAK
Sbjct: 185 GTPPPPHSSSPYNNVHNRRPDDSAK 209

[Close]

BLAST of CmoCh17G012410 vs. NCBI nr
Match: XP_023547760.1 (RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 424.1 bits (1089), Expect = 7.5e-115
Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNI 63
           S+  AFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKP I
Sbjct: 5   SHVPAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPTI 64

Query: 64  PAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 123
           PAPKPTTHEKKQSREDDG+HPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP
Sbjct: 65  PAPKPTTHEKKQSREDDGFHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESP 124

Query: 124 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 183
           VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP
Sbjct: 125 VVEGKGFDGGHGNRGKTRMKPDAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGP 184

Query: 184 GTPPPPHSSSPYNNVHNRRPDDSAK 209
           GTPPPPHSSSPYNNVHNRRPDDSAK
Sbjct: 185 GTPPPPHSSSPYNNVHNRRPDDSAK 209

[Close]

BLAST of CmoCh17G012410 vs. NCBI nr
Match: KAG7014513.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 180/224 (80.36%), Postives = 181/224 (80.80%), Query Frame = 0


Query: 27  ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA 86
           ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA
Sbjct: 3   ARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPNIPAPKPTTHEKKQSREDDGYHPYA 62

Query: 87  NSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSGRESPVVEGKGFDGGHGNRGKTRMKPDA 146
           NSPGHRENPSRKQSGSEYSIDRSPLHRH KPSGRESPVVEGKGFDGGHGNRGKTRMKPDA
Sbjct: 63  NSPGHRENPSRKQSGSEYSIDRSPLHRHTKPSGRESPVVEGKGFDGGHGNRGKTRMKPDA 122

Query: 147 ------------------------------------------PEGTAVPKFGSWDVNNPA 206
                                                     PEGTAVPKFGSWDVNNPA
Sbjct: 123 VSFLPFLTPCSIIHKSEQNPQINFKSFFLRRCILKWYILVVQPEGTAVPKFGSWDVNNPA 182

Query: 207 SADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNRRPDDSAK 209
           SADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHN+RPDDSAK
Sbjct: 183 SADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNQRPDDSAK 226

[Close]

BLAST of CmoCh17G012410 vs. NCBI nr
Match: XP_038896146.1 (RPM1-interacting protein 4 [Benincasa hispida])

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-92
Identity = 169/212 (79.72%), Postives = 186/212 (87.74%), Query Frame = 0


Query: 4   SNCLAFGNWENEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFADNSHEAPPVKPN- 63
           S+  AFGNWE+EGNVPYTVFFDKARKGRGGGPIRNPNDPEEYP++  DNSHEA P KPN 
Sbjct: 5   SHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDILKDNSHEAAPTKPNP 64

Query: 64  ---IPAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSGSEYSIDRSPLHRHAKPSG 123
                APKP THE++ SRED G+ PYANSPG+RENP R+QSGSEYSIDRSPLHR AKPSG
Sbjct: 65  KDDTTAPKPMTHERRHSREDGGFRPYANSPGNRENPGRRQSGSEYSIDRSPLHRQAKPSG 124

Query: 124 RESPVVEGKGFDGGHGNRGKTRMKPDA---PEGTAVPKFGSWDVNNPASADGFTHIFGKV 183
           R+SPV EGK F+GG+GNRGKTRMK DA   PEGTAVPKFGSWDVNNPASADGFTHIFG+V
Sbjct: 125 RDSPVTEGKSFEGGYGNRGKTRMKNDATPEPEGTAVPKFGSWDVNNPASADGFTHIFGEV 184

Query: 184 REEKMGPGTPPPPHSSSPYNNVHNRRPDDSAK 209
           R+EK+GPGTPPP HSSSPYNNV+NRRP+DS K
Sbjct: 185 RKEKLGPGTPPPQHSSSPYNNVNNRRPNDSVK 216

[Close]

BLAST of CmoCh17G012410 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-25
Identity = 85/217 (39.17%), Postives = 112/217 (51.61%), Query Frame = 0


Query: 1   MACSNCLAFGNWENEGNVPYTVFFDKARKGRG-GGPIRNPNDPEEYPEMFADNSHEAPP- 60
           MA SN   FGNWE E NVPYT +FDKARK R  G  I NPND    PE  +D+  +APP 
Sbjct: 1   MARSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPND----PEYNSDSQSQAPPH 60

Query: 61  -----VKPNIPAPKPTTHEKKQSREDDGYHPYANSPGHRENPSRKQSG-----SEYSIDR 120
                 KP        + E  +SRE+     + ++ G     + K+ G     + Y  ++
Sbjct: 61  PPSSRTKPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYD-NK 120

Query: 121 SPLHRHAKPSGRESPVVEGKGFDGGHGNRGKTRMKP------DAPEG-TAVPKFGSWDVN 180
           SPLH+++              +DG     GK+R KP      ++PE  T VPKFG WD N
Sbjct: 121 SPLHKNS--------------YDG----TGKSRPKPTNLRADESPEKVTVVPKFGDWDEN 180

Query: 181 NPASADGFTHIFGKVREEK-----MGPGTPPPPHSSS 194
           NP+SADG+THIF KVREE+     +   +  P H SS
Sbjct: 181 NPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSS 194

[Close]

BLAST of CmoCh17G012410 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-09
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 146 APEGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSSPYNNVHNRRPDD 205
           A +G  +PKFG WDVN+P+SA+GFT IF K R EK G G    P    P  N +    + 
Sbjct: 2   ADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEK 61

Query: 206 SAK 209
            AK
Sbjct: 62  PAK 64

[Close]

BLAST of CmoCh17G012410 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-09
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 148 EGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSS 194
           +G  +PKFG WDVN+PASA+GFT IF K R+EK   G P  P  SS
Sbjct: 4   KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 49

[Close]

BLAST of CmoCh17G012410 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-09
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 148 EGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSS 194
           +G  +PKFG WDVN+PASA+GFT IF K R+EK   G P  P  SS
Sbjct: 20  KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 65

[Close]

BLAST of CmoCh17G012410 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-09
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 148 EGTAVPKFGSWDVNNPASADGFTHIFGKVREEKMGPGTPPPPHSSS 194
           +G  +PKFG WDVN+PASA+GFT IF K R+EK   G P  P  SS
Sbjct: 20  KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSS 65

The following BLAST results are available for this feature:

BLAST of CmoCh17G012410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	2.8e-24	39.17	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
O22633	1.1e-07	58.70	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]

BLAST of CmoCh17G012410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JWD7	2.5e-116	98.54	RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488479 PE=4...	[more]
A0A6J1GP44	2.5e-116	98.54	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111455855 PE...	[more]
A0A5A7SK62	1.5e-89	76.67	RPM1-interacting protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3C6U9	1.5e-89	76.67	RPM1-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103497569 PE=4 SV=1	[more]
A0A6J1CY94	2.2e-88	75.45	RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111015304 P...	[more]

BLAST of CmoCh17G012410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953250.1	5.2e-116	98.54	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022991999.1 RPM1-intera...	[more]
KAG6575990.1	2.6e-115	98.05	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547760.1	7.5e-115	97.56	RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG7014513.1	1.7e-95	80.36	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038896146.1	1.4e-92	79.72	RPM1-interacting protein 4 [Benincasa hispida]	[more]

BLAST of CmoCh17G012410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	2.0e-25	39.17	RPM1 interacting protein 4	[more]
AT2G04410.1	7.7e-09	46.03	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	7.7e-09	58.70	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	7.7e-09	58.70	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	7.7e-09	58.70	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 148..180 e-value: 9.1E-20 score: 69.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..106
None	No IPR available	PANTHER	PTHR33159:SF6	RPM1-INTERACTING PROTEIN 4	coord: 1..208
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 1..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012410.1	CmoCh17G012410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane