CmoCh17G012130 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G012130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich protein 23-like isoform X1
LocationCmo_Chr17: 9700827 .. 9701264 (-)
RNA-Seq ExpressionCmoCh17G012130
SyntenyCmoCh17G012130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTATGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCGTCTCCGGCCTCCCCTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGGATTGGCGGGCTCGGTGGCCCTGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAGTTGGGGGACTGGGAGGCACTGGTGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

mRNA sequence

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTATGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCGTCTCCGGCCTCCCCTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGGATTGGCGGGCTCGGTGGCCCTGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAGTTGGGGGACTGGGAGGCACTGGTGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

Coding sequence (CDS)

ATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTATGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCGTCTCCGGCCTCCCCTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGGATTGGCGGGCTCGGTGGCCCTGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAGTTGGGGGACTGGGAGGCACTGGTGGTGGCTTGGGTGGAGGTGGAAGCGGAGGTACCGGTGGTGTTGGTGTTGGTGGCGGTTCTGGTGGCCCTTATCCTTGA

Protein sequence

MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSGGPYP
Homology
BLAST of CmoCh17G012130 vs. ExPASy TrEMBL
Match: A0A6J1GP70 (glycine-rich protein 23-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455872 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 130/145 (89.66%), Postives = 130/145 (89.66%), Query Frame = 0

Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIG 60
           MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIG
Sbjct: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIG 60

Query: 61  GLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGVGGLGGTG 120
           GLGGPGGIGGLGFPGGIGGL               GGLGGPGGIGGLGGPGGVGGLGGTG
Sbjct: 61  GLGGPGGIGGLGFPGGIGGL---------------GGLGGPGGIGGLGGPGGVGGLGGTG 120

Query: 121 GGLGGGGSGGTGGVGVGGGSGGPYP 146
           GGLGGGGSGGTGGVGVGGGSGGPYP
Sbjct: 121 GGLGGGGSGGTGGVGVGGGSGGPYP 130

BLAST of CmoCh17G012130 vs. ExPASy TrEMBL
Match: A0A6J1H8T3 (acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 94/153 (61.44%), Postives = 100/153 (65.36%), Query Frame = 0

Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLL--GGVGGVS-----GLPFGGLGGGL 60
           M KLFMA+LLAL+ATHA+ARP P  ATF DQKN L  GG+GG S     GLPFGGLGG +
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  G--FPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPG 120
           G   PGGIG     GGIGGLG  GG GG G  GG+GG       GGLGG  G G LG   
Sbjct: 61  GGTGPGGIG-----GGIGGLGGFGGGGGAGLGGGLGG-------GGLGGTMGGGNLG--- 120

Query: 121 GVGGLGGT-GGGLGGGGSGGTGGVGVGGGSGGP 144
             GGLGGT GGGLGGG  GG GG   GGGSG P
Sbjct: 121 --GGLGGTVGGGLGGGLGGGVGG---GGGSGLP 133

BLAST of CmoCh17G012130 vs. ExPASy TrEMBL
Match: A0A6P5RWK0 (glycine-rich protein 5-like OS=Prunus avium OX=42229 GN=LOC110750110 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 99/174 (56.90%), Postives = 109/174 (62.64%), Query Frame = 0

Query: 1   MGKLFMALLLALMATHAVARPAPT--HATFNDQKNLLGGVGGVS-----GLPFGG----- 60
           M +  + L+LAL+  H  AR  PT   A F DQKN LGGVGG S     GLPF G     
Sbjct: 1   MARWCIVLVLALVVAHTTARNVPTANDAGFKDQKNFLGGVGGFSGIGSNGLPFAGAGAGG 60

Query: 61  ---LGGGLGFPGGIGGL----GGPGGIGGLGFPGGIGGL----GFPGGIGGLGFPGGIGG 120
              LGGGLG   GIGG+    GG GGIG LG  GG+GGL    G  GG+GGLG  GG+GG
Sbjct: 61  GGDLGGGLGGGAGIGGVAGLGGGSGGIGDLGGAGGLGGLGGLGGGTGGLGGLGGLGGLGG 120

Query: 121 L----GGPGGIGGLGGPGGVGG-LGGTGGGLGGGGSGGTGGVGVGGGSGG-PYP 146
           L    GG GG+GGLGG GG GG LGG GGG+GGG  GG GG GVGGGSG  PYP
Sbjct: 121 LGGLGGGTGGLGGLGGVGGAGGVLGGAGGGVGGGVGGGVGG-GVGGGSGVLPYP 173

BLAST of CmoCh17G012130 vs. ExPASy TrEMBL
Match: A0N070 (Glycine-rich protein OS=Gossypium hirsutum OX=3635 GN=GRP3 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.7e-09
Identity = 88/159 (55.35%), Postives = 101/159 (63.52%), Query Frame = 0

Query: 6   MALLLALMATHAVARPAPT--------------HATFNDQKNLL--GGVGGV-----SGL 65
           + +LLAL+  HA AR  PT               A+  DQKN L  GG GG      +G+
Sbjct: 8   LLVLLALVVVHASARNVPTKTTTMAANAVPSAASASVGDQKNFLTYGGAGGFAGIGSNGM 67

Query: 66  PFGGLG--GGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPG 125
           PFGG G  GG+   GG+GGLGG GG+GGLG  GG GGLG  GG+GGLG PGG+GG GG G
Sbjct: 68  PFGGGGVLGGVTPFGGVGGLGG-GGLGGLGGTGGFGGLGGTGGVGGLGGPGGVGGFGGTG 127

Query: 126 GIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSG 142
           G  GLGG GGVGG GG GGG+GGG  G  GG GVGGG+G
Sbjct: 128 GADGLGGTGGVGGFGGAGGGVGGGVGGAVGG-GVGGGAG 164

BLAST of CmoCh17G012130 vs. ExPASy TrEMBL
Match: A0A5D2JY80 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D08G241800v1 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.7e-09
Identity = 88/159 (55.35%), Postives = 101/159 (63.52%), Query Frame = 0

Query: 6   MALLLALMATHAVARPAPT--------------HATFNDQKNLL--GGVGGV-----SGL 65
           + +LLAL+  HA AR  PT               A+  DQKN L  GG GG      +G+
Sbjct: 8   LLVLLALVVVHASARNVPTKTTTMAANAVPSAASASVGDQKNFLTYGGAGGFAGIGSNGM 67

Query: 66  PFGGLG--GGLGFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPG 125
           PFGG G  GG+   GG+GGLGG GG+GGLG  GG GGLG  GG+GGLG PGG+GG GG G
Sbjct: 68  PFGGGGVLGGVTPFGGVGGLGG-GGLGGLGGTGGFGGLGGTGGVGGLGGPGGVGGFGGTG 127

Query: 126 GIGGLGGPGGVGGLGGTGGGLGGGGSGGTGGVGVGGGSG 142
           G  GLGG GGVGG GG GGG+GGG  G  GG GVGGG+G
Sbjct: 128 GADGLGGTGGVGGFGGAGGGVGGGVGGAVGG-GVGGGAG 164

BLAST of CmoCh17G012130 vs. NCBI nr
Match: KAG6575962.1 (hypothetical protein SDJN03_26601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-46
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0

Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIG 60
           MGKLFMALLLAL+ATHAVARPAPTHATFNDQKNLLGGVG +SGLPFGGLGGGLGFPGGIG
Sbjct: 1   MGKLFMALLLALVATHAVARPAPTHATFNDQKNLLGGVGAISGLPFGGLGGGLGFPGGIG 60

Query: 61  GLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGVGGLGGTG 120
           GLGGPGGIGGLGFPGGIGGLGFPGGIGGLG PGGIGGLGGPGG GG+   GGVGGLGGTG
Sbjct: 61  GLGGPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGNGGV---GGVGGLGGTG 120

Query: 121 GGLGGGGSGGTGGVGVGGGSGGPYP 146
           GGLGGGGSGGTG  GVGGGSGGPYP
Sbjct: 121 GGLGGGGSGGTG--GVGGGSGGPYP 140

BLAST of CmoCh17G012130 vs. NCBI nr
Match: XP_022953275.1 (glycine-rich protein 23-like isoform X1 [Cucurbita moschata] >XP_022953276.1 glycine-rich protein 23-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 5.3e-45
Identity = 130/145 (89.66%), Postives = 130/145 (89.66%), Query Frame = 0

Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIG 60
           MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIG
Sbjct: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIG 60

Query: 61  GLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGVGGLGGTG 120
           GLGGPGGIGGLGFPGGIGGL               GGLGGPGGIGGLGGPGGVGGLGGTG
Sbjct: 61  GLGGPGGIGGLGFPGGIGGL---------------GGLGGPGGIGGLGGPGGVGGLGGTG 120

Query: 121 GGLGGGGSGGTGGVGVGGGSGGPYP 146
           GGLGGGGSGGTGGVGVGGGSGGPYP
Sbjct: 121 GGLGGGGSGGTGGVGVGGGSGGPYP 130

BLAST of CmoCh17G012130 vs. NCBI nr
Match: XP_023549420.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 6.5e-43
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0

Query: 6   MALLLALMATHAVARPAPTHATFNDQKNLLGGVGGVSGLPFGGLGGGLGFPGGIGGLGGP 65
           MALLLAL+ATHAVARPAPTHATFNDQKNLLGGVGG+SGLPFGGLGGGLGFPGGIGGLGGP
Sbjct: 1   MALLLALVATHAVARPAPTHATFNDQKNLLGGVGGISGLPFGGLGGGLGFPGGIGGLGGP 60

Query: 66  GGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGVGGLGGTGGGLGG 125
           GGIGGLGFPGGIGGLGFPGGIGGLG  GG GG+GG GG GG+GG GGVGGLGGTGGGLGG
Sbjct: 61  GGIGGLGFPGGIGGLGFPGGIGGLGGLGGPGGIGGLGGPGGIGGVGGVGGLGGTGGGLGG 120

Query: 126 GGSGGTGGVGVGGGSGGPYP 146
           GGSGGTG  GVGGGSGGPYP
Sbjct: 121 GGSGGTG--GVGGGSGGPYP 138

BLAST of CmoCh17G012130 vs. NCBI nr
Match: KAG7014487.1 (hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-17
Identity = 112/206 (54.37%), Postives = 118/206 (57.28%), Query Frame = 0

Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLL--GGVG-----GVSGLPFGGLGGGL 60
           M KL MAL LALM THA+ARP P  ATFNDQKN L  GG+G     G +GLPFGG+GG +
Sbjct: 1   MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GFPGGI-GGLGGP-GGIGGLGFPGGIGG-------------------------------- 120
           G  G + GGLGGP GGIGGLG  GG GG                                
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSEKKKMGKLFMALLLALVA 120

Query: 121 --------------------LGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGVGGLGGT 146
                               LG  G I GL F G  GGLG PGGIGGLGGPGGVGGLGGT
Sbjct: 121 THAVARPAPTHATFNDQKNLLGGVGAISGLPFGGLGGGLGFPGGIGGLGGPGGVGGLGGT 180

BLAST of CmoCh17G012130 vs. NCBI nr
Match: XP_011659762.1 (glycine-rich protein 5 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-10
Identity = 94/153 (61.44%), Postives = 100/153 (65.36%), Query Frame = 0

Query: 1   MGKLFMALLLALMATHAVARPAPTHATFNDQKNLL--GGVGGVS-----GLPFGGLGGGL 60
           M KLFMALLLAL+ATHA+ARP P   TF+DQKN L  GGVGG S     GLPFGGLGG +
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GFPGGIGGLGGPGGIGGLGFPGGIGGLGFPGGIGGLGFPGGIGGLGGPGGIGGLGGPGGV 120
           G  G  GGLG     GGLG     GGLG     GG G  GG+GGLGGPG     GG GG+
Sbjct: 61  GGGGLGGGLG-----GGLG-----GGLG-----GGTGIGGGLGGLGGPG-----GGFGGI 120

Query: 121 GG-LGGTGGGLGGGGSGGTGGVGVGGGSGGPYP 146
           GG  GG GGGLGGG  GG GG GVGG SG  YP
Sbjct: 121 GGTTGGLGGGLGGGLGGGLGG-GVGGASGVTYP 132

BLAST of CmoCh17G012130 vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.7e-04
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 0

Query: 34  LLGGVGGVSGLPFGGLGGGLGFP-----GGIGGLGG-PGGIGGL-GFPGGIGGLGFPGGI 93
           L+GG+GG+    +GG+GG  G       GG+GGLGG  GG+GGL G  GG+GGLG  GG+
Sbjct: 88  LIGGLGGIG--KYGGIGGAAGIGGFHSIGGVGGLGGVGGGVGGLGGVGGGVGGLGGVGGL 147

Query: 94  GGLGFPGGIGGLGGPGGIGGLGGPGGVGGLGGTGGGLGG-GGSGGTGGVGVGGGSGG 143
           GG G  GG+GG+G  GGIG  GG GG+GGLGG GGGLGG GG G  GG+GVGGG GG
Sbjct: 148 GGAGL-GGVGGVG--GGIGKAGGIGGLGGLGGAGGGLGGVGGLGKAGGIGVGGGIGG 199

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GP702.6e-4589.66glycine-rich protein 23-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1H8T36.0e-1061.44acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1[more]
A0A6P5RWK02.3e-0956.90glycine-rich protein 5-like OS=Prunus avium OX=42229 GN=LOC110750110 PE=4 SV=1[more]
A0N0708.7e-0955.35Glycine-rich protein OS=Gossypium hirsutum OX=3635 GN=GRP3 PE=2 SV=1[more]
A0A5D2JY808.7e-0955.35Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D08G241800v1 P... [more]
Match NameE-valueIdentityDescription
KAG6575962.11.7e-4692.41hypothetical protein SDJN03_26601, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022953275.15.3e-4589.66glycine-rich protein 23-like isoform X1 [Cucurbita moschata] >XP_022953276.1 gly... [more]
XP_023549420.16.5e-4391.43glycine-rich protein 23-like [Cucurbita pepo subsp. pepo][more]
KAG7014487.12.8e-1754.37hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_011659762.14.3e-1061.44glycine-rich protein 5 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT1G04660.11.7e-0459.83glycine-rich protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012130.1CmoCh17G012130.1mRNA