CmoCh17G010760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G010760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	translocator protein homolog
Location	Cmo_Chr17: 8944187 .. 8944753 (-)
RNA-Seq Expression	CmoCh17G010760
Synteny	CmoCh17G010760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGCGACTCCCCCGCCGTCCCAGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTTCCATCGGCAAGGGTCGTGAACTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGCACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCCGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTTACAATGGTTTCTGTTTGA

mRNA sequence

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGCGACTCCCCCGCCGTCCCAGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTTCCATCGGCAAGGGTCGTGAACTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGCACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCCGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTTACAATGGTTTCTGTTTGA

Coding sequence (CDS)

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGCGACTCCCCCGCCGTCCCAGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTTCCATCGGCAAGGGTCGTGAACTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGCACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCCGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTTACAATGGTTTCTGTTTGA

Protein sequence

MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTIVSLTMVSV

Homology

[Close]

BLAST of CmoCh17G010760 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-30
Identity = 73/193 (37.82%), Postives = 110/193 (56.99%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAA--------ADEVSAKREKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D  A   A        AD+   KR++ +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  +PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCL 180
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 VWSVFLTIVSLTM 186
            W+ F+  V++ +
Sbjct: 181 AWAAFVAAVNVKL 193

[Close]

BLAST of CmoCh17G010760 vs. ExPASy TrEMBL
Match: A0A6J1GQH6 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 4.9e-97
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120
           ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL
Sbjct: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120

Query: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180
           VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmoCh17G010760 vs. ExPASy TrEMBL
Match: A0A6J1JZC9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 181/188 (96.28%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120
           ++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYTLYL
Sbjct: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120

Query: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180
           VLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmoCh17G010760 vs. ExPASy TrEMBL
Match: A0A0A0KAU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.5e-64
Identity = 130/191 (68.06%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MASTELKHRTTGDS--PAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           MAST+LKHR T DS   +  +A D    K+ KNK IAKRGL+SLA+A+SIP+++TL  IL
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           L +  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF ARPNALYLY 
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180
           LY VLC+ W+ L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV 
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTIVSLTMVSV 189
           LT+V+LT+VS+
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of CmoCh17G010760 vs. ExPASy TrEMBL
Match: A0A5A7VJL5 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00470 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.7e-63
Identity = 129/191 (67.54%), Postives = 155/191 (81.15%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVS--AKREKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           MAST+LKHR T DS        +V+   K+ +NK IAKRGL+SLA+A+SIP+++TLL I 
Sbjct: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIF 60

Query: 61  LLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           L +  KNYYP SA +PFWVPS +VVNWGSL SSLLMG+++WL WAEGGF +RPNALYLY 
Sbjct: 61  LFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120

Query: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180
           LYLVL +AW+ LV GAG+R L S+ACLGKTA LVGCDRLFRGVN IAADLV+PCLVWSV 
Sbjct: 121 LYLVLSLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180

Query: 181 LTIVSLTMVSV 189
           LT+V+LTM S+
Sbjct: 181 LTVVNLTMASL 191

[Close]

BLAST of CmoCh17G010760 vs. ExPASy TrEMBL
Match: A0A6J1DBR2 (translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.1e-53
Identity = 115/187 (61.50%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MAS +LKHR   +S     A    +A   K  A A+RGLKSLAVAVS+P++++LL++ LL
Sbjct: 1   MASPDLKHRKPTESDDSATA----TAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLL 60

Query: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120
           + P  + PS+ KPFW PSA  VN GS ASSLLMG + WL WA+GGF + PNALYLYTLY+
Sbjct: 61  SDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYTLYV 120

Query: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180
           +LC  W+GL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PCL WSVFLT+
Sbjct: 121 LLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTV 180

Query: 181 VSLTMVS 188
           V+LTMV+
Sbjct: 181 VNLTMVA 183

[Close]

BLAST of CmoCh17G010760 vs. NCBI nr
Match: XP_022953735.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120
           ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL
Sbjct: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120

Query: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180
           VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmoCh17G010760 vs. NCBI nr
Match: KAG6575839.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 185/191 (96.86%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVP---AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180
           LYLVLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180

Query: 181 LTIVSLTMVSV 189
           LTIVSLTMV+V
Sbjct: 181 LTIVSLTMVAV 191

[Close]

BLAST of CmoCh17G010760 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 352.4 bits (903), Expect = 2.3e-93
Identity = 181/188 (96.28%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120
           ++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYTLYL
Sbjct: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120

Query: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180
           VLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmoCh17G010760 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.7 bits (883), Expect = 4.9e-91
Identity = 179/188 (95.21%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPA P AADE SAKR KNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAAP-AADEASAKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120
           +RPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNA+YLYTLYL
Sbjct: 61  SRPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYTLYL 120

Query: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180
           VLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 187

[Close]

BLAST of CmoCh17G010760 vs. NCBI nr
Match: KAG7014374.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 171/181 (94.48%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVP---AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 179
           LYLVLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180

[Close]

BLAST of CmoCh17G010760 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-31
Identity = 73/193 (37.82%), Postives = 110/193 (56.99%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAA--------ADEVSAKREKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D  A   A        AD+   KR++ +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  +PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCL 180
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 VWSVFLTIVSLTM 186
            W+ F+  V++ +
Sbjct: 181 AWAAFVAAVNVKL 193

The following BLAST results are available for this feature:

BLAST of CmoCh17G010760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	1.7e-30	37.82	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of CmoCh17G010760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQH6	4.9e-97	100.00	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 ...	[more]
A0A6J1JZC9	1.1e-93	96.28	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV...	[more]
A0A0A0KAU9	2.5e-64	68.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1	[more]
A0A5A7VJL5	2.7e-63	67.54	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1DBR2	1.1e-53	61.50	translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3...	[more]

BLAST of CmoCh17G010760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953735.1	1.0e-96	100.00	translocator protein homolog [Cucurbita moschata]	[more]
KAG6575839.1	1.4e-93	96.86	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022992488.1	2.3e-93	96.28	translocator protein homolog [Cucurbita maxima]	[more]
XP_023548365.1	4.9e-91	95.21	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
KAG7014374.1	1.4e-85	94.48	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh17G010760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	1.2e-31	37.82	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 37..187 e-value: 6.8E-20 score: 73.2
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 44..186 e-value: 2.7E-18 score: 66.3
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 31..188 e-value: 1.0E-28 score: 97.8
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 22..186
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 42..186 e-value: 3.20375E-16 score: 69.8332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 22..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G010760.1	CmoCh17G010760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane