CmoCh17G010690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G010690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nucleolar protein 16
Location	Cmo_Chr17: 8902833 .. 8904119 (-)
RNA-Seq Expression	CmoCh17G010690
Synteny	CmoCh17G010690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCGTCTACGTCTAAACCCTAGCCACCAGTTGTTCTTTGAATTCACAGAGCGACAGAGAGAGATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCTCCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGATGTGGAAGAGGACGGTAAGTTTGAGTTTAATCACCCACCATCAGCCTTGGGATTTTTTATCACTATCAGTGTTGCAATTTTTTAAATGCTTTCTTTTAGAGTTACGCAAGAACCATTACTCATCCAGATATTGTCTTCATTGGACTTCCCTTTCGGGATTCTCCTCAAAGTTGTTGGGTTTTTCCTTCGGGCTTACCCATTCCGCCTCTTCTAAGGAGAGATTTACACACCCTTGGAAGGAATGTTAATACCCTGGGTATTGAAATGAAATAGAATGTTGATTGACTTGATATTAATGTCTTATTTGTCACGAATCCACATGAGGATTCCTATGCAAACTTTTGAGTTGTGTTTCTGATTTGATCTTGGGCTGATTCTGTGTTCTTTCTTTTGTGTACATTAGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGAGATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAGTATGGAGATGATCATGAGGTAGGCTTCAGTTTTACTTGCTTTTAGATCGGACTAATTGGCTTATTTTTTCTCACTGAAAGTTGTTGTTCTGCAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTTTAGATAAGAATCCATTGATATTGACTCGTTAAAGATCTTTCAAATTGTTCTGTTACAGAGGTGAAATCAGATAAGGTATGATCATGAAATCTTATTGAGCAATATTGTTTTGAACCCTAATCTATGAGAGGCTTGAAAGATGGTTCATTCCCTTGCTTGCTGTTTTCTTCCTTTCAAGGAAATGGCCAACCCATAATTCTAATTCTTGG

mRNA sequence

CATCGTCTACGTCTAAACCCTAGCCACCAGTTGTTCTTTGAATTCACAGAGCGACAGAGAGAGATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCTCCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGAGATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAGTATGGAGATGATCATGAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTTTAGATAAGAATCCATTGATATTGACTCGTTAAAGATCTTTCAAATTGTTCTGTTACAGAGGTGAAATCAGATAAGGTATGATCATGAAATCTTATTGAGCAATATTGTTTTGAACCCTAATCTATGAGAGGCTTGAAAGATGGTTCATTCCCTTGCTTGCTGTTTTCTTCCTTTCAAGGAAATGGCCAACCCATAATTCTAATTCTTGG

Coding sequence (CDS)

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCTCCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGAGATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAGTATGGAGATGATCATGAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTTTAGATAAGAATCCATTGATATTGACTCGTTAA

Protein sequence

MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

Homology

[Close]

BLAST of CmoCh17G010690 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.1e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of CmoCh17G010690 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.1e-103
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of CmoCh17G010690 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 175/193 (90.67%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 189

[Close]

BLAST of CmoCh17G010690 vs. ExPASy TrEMBL
Match: A0A1S3BSM4 (Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 175/193 (90.67%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 189

[Close]

BLAST of CmoCh17G010690 vs. ExPASy TrEMBL
Match: A0A6J1DE29 (Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.8e-93
Identity = 176/194 (90.72%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120

Query: 121 LGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKR+DGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCLDKNPLILTR 194
           YHSC DKNPLILTR
Sbjct: 181 YHSCPDKNPLILTR 194

[Close]

BLAST of CmoCh17G010690 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothetical protein SDJN03_26473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 389.0 bits (998), Expect = 2.3e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of CmoCh17G010690 vs. NCBI nr
Match: KAG7014368.1 (hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRR GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of CmoCh17G010690 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 384.8 bits (987), Expect = 4.4e-103
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of CmoCh17G010690 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           H CLDKNPLILTR
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of CmoCh17G010690 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 364.0 bits (933), Expect = 8.0e-97
Identity = 179/193 (92.75%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WD+KA VIHN
Sbjct: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDDKARVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS PPSD+PDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPPSDEPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILIR 193

[Close]

BLAST of CmoCh17G010690 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-66
Identity = 124/196 (63.27%), Postives = 158/196 (80.61%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           M RSRRKY+ SRAKV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSL-PPSDDP---DSVLDSSGSDVEEDDL 120
           YKSFGV+SNPNLL +R+RTDH+++ D L VPP + PP+DDP   +     SGS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKL 180
           KTALGK+R+DGKSAPL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYHSCLDKNPLILT 193
           C RY    DKNP++++
Sbjct: 181 CTRYQIYKDKNPILVS 193

The following BLAST results are available for this feature:

BLAST of CmoCh17G010690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G010690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRW5	1.1e-104	100.00	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A6J1JMQ4	2.1e-103	98.96	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A5A7VLA5	1.2e-93	90.67	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BSM4	1.2e-93	90.67	Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1	[more]
A0A6J1DE29	5.8e-93	90.72	Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1	[more]

BLAST of CmoCh17G010690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954094.1	2.3e-104	100.00	uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothet...	[more]
KAG7014368.1	2.6e-103	99.48	hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022991747.1	4.4e-103	98.96	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	1.7e-102	98.45	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_038898931.1	8.0e-97	92.75	nucleolar protein 16 [Benincasa hispida]	[more]

BLAST of CmoCh17G010690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	1.2e-66	63.27	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 113..181 e-value: 2.5E-16 score: 60.3
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G010690.1	CmoCh17G010690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus