CmoCh17G009690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G009690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr17: 8486562 .. 8487576 (-)
RNA-Seq Expression	CmoCh17G009690
Synteny	CmoCh17G009690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGATGAAGCGTGGTGGTTCTGTGTGAATGCTTACTACAAATGGAAGCCGATGTTGGAAGCTGAGGTCGCCGGAAAGTTGATCGGAAGTAGGAGACAATCGGCGAAGTTGAACGAGGTCAAGTTAAAGAAAGCTCCACGACTCCGTTCTACGAAGCAGTCGCCTGCTTTGAGGTTTTTGCTTATATATATATATATATATGTACGTATGTATATTTATTAGCATCCGCTCGACCAATAGTTTCCTCCAATTGAAGCATTGAGGACTTGTTTCCGTTGAACTATATATCTGATCTACGGTGTGCATCCTTTTCTTGTAATTTTTAGCTTCCTGTTGAATTGCTGATATTTGTCTTTAAATGTTGAAGAACATGAATGATGTGAGTGTATTGCTTTATTGCGTCCGGAAAATTAAGCTCGAATTTCTGTTTGTGAGTTGTAGTTTATGAACTATGGTCGATGAAAGTGATCTCTCGCTTTCTTTTCGATGCTTGTTCTATAATCTTGATAACGGATTTTTTGCTGGACTGCTTGTACGTGAGGCTTTTACTGTATCATTTTATTTATTATTGGTTTGTTTAACTTGCTTGTTTGAAGGACAGCTTTTGAATCCGAAGCGAATGCTAATGAGTATTCTTGCGAATCCTTATATCTTTAGTACGATGTTCGGGAACGTTGGTTAATTTTTCAGGATTCATATTTGTTTAATTTCCGGTTTTCTAGTGTTTGTTTGAGTTCTTCATGTGAAGTTGGACACATTTCTGGTTTTAAAATTCTTGCCTACACTCTGACATTGTGACACTCGGTAATGCCTTTCGTTTGTAAGGTTGTTGATCACCTGTTCTAACAATATTGGCTCTTTTTTTTCTCGTTATTTTATGTTATTTAGGCAATACACATGTAATTGGTGGTTCTAACGACTATTTTTGCACTTGGAAATGGACGAAGTCTATTGGTTTTTTATTAACTTACTATTGTTTGGCATCAGTTGGCGCATCCGTGAGCAATGA

mRNA sequence

ATGGATGAAGATGAAGCGTGGTGGTTCTGTGTGAATGCTTACTACAAATGGAAGCCGATGTTGGAAGCTGAGGTCGCCGGAAAGTTGATCGGAAGTAGGAGACAATCGGCGAAGTTGAACGAGGTCAAGTTAAAGAAAGCTCCACGACTCCGTTCTACGAAGCAGTCGCCTGCTTTGAGTTGGCGCATCCGTGAGCAATGA

Coding sequence (CDS)

ATGGATGAAGATGAAGCGTGGTGGTTCTGTGTGAATGCTTACTACAAATGGAAGCCGATGTTGGAAGCTGAGGTCGCCGGAAAGTTGATCGGAAGTAGGAGACAATCGGCGAAGTTGAACGAGGTCAAGTTAAAGAAAGCTCCACGACTCCGTTCTACGAAGCAGTCGCCTGCTTTGAGTTGGCGCATCCGTGAGCAATGA

Protein sequence

MDEDEAWWFCVNAYYKWKPMLEAEVAGKLIGSRRQSAKLNEVKLKKAPRLRSTKQSPALSWRIREQ

Homology

[Close]

BLAST of CmoCh17G009690 vs. NCBI nr
Match: KAG7014279.1 (putative receptor-like protein kinase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MDEDEAWWFCVNAYYKWKPMLEAEVAGKLIGSRRQSAKLNEVKLKKAPRLRSTKQSPAL 60
          MDEDEAWWFCVNAYYKWKPMLEAEVAGKLIGSRRQSAKLNEVKLKKAPRLRSTKQSPAL
Sbjct: 1  MDEDEAWWFCVNAYYKWKPMLEAEVAGKLIGSRRQSAKLNEVKLKKAPRLRSTKQSPAL 59

[Close]

BLAST of CmoCh17G009690 vs. NCBI nr
Match: KAG6575723.1 (Delta(24)-sterol reductase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MDEDEAWWFCVNAYYKWKPMLEAEVAGKLIGSRRQSAKLNEV 43
          MDEDEAWWFCVNAYYKWKPMLEAEVAGKLIGSRRQSAKLNE+
Sbjct: 1  MDEDEAWWFCVNAYYKWKPMLEAEVAGKLIGSRRQSAKLNEL 42

The following BLAST results are available for this feature:

BLAST of CmoCh17G009690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G009690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G009690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014279.1	1.4e-24	100.00	putative receptor-like protein kinase, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6575723.1	2.0e-15	97.62	Delta(24)-sterol reductase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh17G009690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G009690.1	CmoCh17G009690.1	mRNA