CmoCh17G009330 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G009330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 8292424 .. 8295739 (+)
RNA-Seq ExpressionCmoCh17G009330
SyntenyCmoCh17G009330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTTCTTTTCCAACACTGTTTAACCAGTTTCAGTGCAGAAAACTTGAAGATTCAGTGTATGACTGTTGATTCATGTGAGGCTCTGTTGCTGGTTGGAAGTTGATGGATTTGCCCCCCTTTCTGCTTGGAAGAAAACCGCTTTTGGTGGTGTTTCTCAGGCAATTCATTCTTGGCTTTAGTAGGTGTACTCTGAGATGAGATGGAAGAGGATGAAGAAATGAAGCACACAAAAAAATGTGGTACACCCGCTTCTATTTCTCTCCTCTTCAATTTACCTCTTCTATTACGCATGTAGTTCTAATCCTGAACGTGTCTCAGATAAACAAAAAAAATTTAGTGTGAAGACTCCTGTAACTTAATTTATGTGCATCTGGGTGTTGTATCTATTCAACTTTGTGTGCATGTTTGAGGCTATAATTTTTCATGTTTCTGGACTTACAAGACATTAAATTATGGAACCTCTTTCATCTTCCCTTACTCCGTCTCTCGCACACAATTAAGAGTAGATAGTAAAATCGTTATTACATGTATGACATGTCTAATACGTGCAAAAGATCATTAAAAACAGTAGTTTGCTAGATTCAAGACGATCAAATAAAACCATCTTTTTTCTGTTTCACCCACTGATATAATAAAAGAAGGAACCAGAAAGCCAATATTTCATATTCTGTGAAGAGTAGTTCGTCCATTCATCTGTATATTTGAAAAAATTCGTAAGCAAAAGAGTTCATTAAATCTTGCATAGGAACCTGAAACGAAGCTAATACATAAGAACAGAAGGTGATGGGCATTAAAGAGATTCATTTTTCACTGCAAGACTATGCTTTATATCATCATATTATTCGTAAGTGCAAGTTTTTACTTCAAGGTCCTGGAGGGAGGAGGAAGCACAGTACGTAAGAATTTCGTCACAAGAAAGCAAGCAGAGGTAAAACTATTTCAAGATAAAAGAATACTATATTAAATGCTAACAGTTGTTCGTTTGTCTTCTTCAGGTCCTCTTTCGTCCCGAAAATAACTGTATGGTCAGTCAAAGCCTTTCTTGCTCTTGAAGTTGCTCCTGCTCAGATTGAACGTAAAAGCACGAACCCGAAATAAGGGAATGCCAAAAACTAATAGAGTACTTCTAGTTCTAAGGTAATCCAACCCAACCCAAGAATGGTGAACCTGAAGAGGCACCATCTTGAGGAGACATGTTGAGGACTCGCATCGGAAAGATGAACGGAATCCTAGTTAGAAATGACTTGTCGTTGGGCGACATTTTAGCTAGTGATCGTGAATCTGTGACTAAATAATCCAAAATGACACACATGGCTTTGAATGCAATGCAATGATTTTGACACTAACCTCTGATACAAAGAAGGCATGAAACCCATATGGAACTCTGTGTGGCAATTCAACAACTGCAACGGGCTCAGATGACATGGTTTTGGCATCCACGACATTCACCGCAGATTTTCTGTAGGTAACAATGAAAATTATTGTCCTCCTCTTTAACCAAATAAACTAAATTTGACCCATCACAGGTATTCGGTAAAACTGCCAACTTGCATTCTAATGCAAATTCAAAGGCTGCTGCTACAGGGTTAGTTCAATTCTACAGTGTAACAGCACAAACCAACCACATCTGCTAGGTCCCATTACGTATAACCGTCAGCCTCACGGTTTTAAAACGTATCTGCTAGGAAGAGGTTTCCACACCTTTATAAGGAATGCATCGTTCCCCTCTCCAACCGATGTGAGATCTCACATATAGAGAGTGGGTCGGTATATTCATGAAACGAAAAGGTTATAAGAAAAAGATTAATTAAGAAAATTATAGAACTCCCACTCTGTAACAGCCCAACCCCACCAGTAGCAGATATTGTCCTCTTTGGGCATTCCTTTCAAGGGCTTCCCCTCACGGTTTTAAAACACGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAAAATGTTTCGTTCCCTTCTCTAACCAATAAGGGATCTCAATGTAGAACTAAACTTTCTAAACAGTACGGCATTCGATAACAGCTATTCAGTAATAGGATATCTAAGAAAGCAAACCGCATTCCAGCTACTACTCGTATGATACATATAAATACATATGACACAAAACTAACGATATAATAGAAGAGGAAAACATTTACCCAGTATTCTCATCATGTACGAATAATATTAAGTAGCCATCATCTTCTTCTGAAGTGGTGCCAGGTATACGAGGAACAAAGATAGCTTCAGAACCAAATCTACCAGGTCCAAGGTCATACAGGCCTCGAACATTTCCTCCAACTTCAATCTTCGTTCTTCCAGTTTCACGTTTAGCATGCAGATCAAATTTAGCAATCCCCGTGACTTTTGCAATGCTGTCCAGTGTAGTTCCATATACATATCGTTGCTTCCTGATTGCATAGAGAGTACATCATCAATTCCATGTGATAGGAATCCAGTTCATCAAGGCCAGAAAAACAAAAAGGAACGTGCAAATAAGAAAATGATAACGAGAATCATCCGAATCGCTAACTGCAGTAGATGACGTGCAATGCTGTCACTAAAACACTGTAAATGCAAATTTTGAATGAATGGTATCCCATTTCAAACTGTTAATTACTCGGATATACAAAGGAATAGAACAAAAATTCCCCTACGGCTAATGTTGTTTCTGAAGATGTAATAGCCCAAACCCACCGCTAGGAGATATTGTTTATAAAGGTTTCCAAAAGGTTTCTAAAACGCGTCTGCTAGGAAGAGGTTTTCGCACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCATAGAAGATGTCTTCTAATGGGGTTCTAGTGCTATAATTAATTGGAAAATTGCAGACGAAAGAGATGTCCTTTAGTTCAAGCTTTTCTTACTCCAAAATTGGATGATCTTTTCATATATCCCCATGGATTTGAGCCGATATTCTTTTACAAATGCTAGAAAAAAAGGGAATTAAAATACCTGCCAGTGTAGCATTCATTCACTCTTGGAAAATCTACAGCAGATTCCGAGAGTTTCCTCTGTGAAGATAAACCAGATTTAAGATTGAATCTCATCTCATACCTGATAGATGGAAAAATAATTAGAAATATCACAGCCACATCAAGAACTTTTCTTCATTTGTAGAAATGGATTAGAGTCCTACAGCTCATTTGAGAAGTTCTCAAGCTTCTCCTTAACAGACCCACTGACCATGTCCAAGTCTGGATTCTCGAGACGGCATGTAATCAAAACTACTTCATCTCCTTCCTCCCAAGCATTAGCTAAGAAGAAGTATACAACATAA

mRNA sequence

ATGGGGCTTCTTTTCCAACACTGTTTAACCAGTTTCAGTGCAGAAAACTTGAAGATTCAGTCCTGGAGGGAGGAGGAAGCACAGTACGTAAGAATTTCGTCACAAGAAAGCAAGCAGAGGTCCTCTTTCGTCCCGAAAATAACTGTATGGTCAGTCAAAGCCTTTCTTGCTCTTGAAGTTGCTCCTGCTCAGATTGAACAGTCCTACAGCTCATTTGAGAAGTTCTCAAGCTTCTCCTTAACAGACCCACTGACCATGTCCAAGTCTGGATTCTCGAGACGGCATGTAATCAAAACTACTTCATCTCCTTCCTCCCAAGCATTAGCTAAGAAGAAGTATACAACATAA

Coding sequence (CDS)

ATGGGGCTTCTTTTCCAACACTGTTTAACCAGTTTCAGTGCAGAAAACTTGAAGATTCAGTCCTGGAGGGAGGAGGAAGCACAGTACGTAAGAATTTCGTCACAAGAAAGCAAGCAGAGGTCCTCTTTCGTCCCGAAAATAACTGTATGGTCAGTCAAAGCCTTTCTTGCTCTTGAAGTTGCTCCTGCTCAGATTGAACAGTCCTACAGCTCATTTGAGAAGTTCTCAAGCTTCTCCTTAACAGACCCACTGACCATGTCCAAGTCTGGATTCTCGAGACGGCATGTAATCAAAACTACTTCATCTCCTTCCTCCCAAGCATTAGCTAAGAAGAAGTATACAACATAA

Protein sequence

MGLLFQHCLTSFSAENLKIQSWREEEAQYVRISSQESKQRSSFVPKITVWSVKAFLALEVAPAQIEQSYSSFEKFSSFSLTDPLTMSKSGFSRRHVIKTTSSPSSQALAKKKYTT
Homology
[Close]
BLAST of CmoCh17G009330 vs. ExPASy TrEMBL
Match: A0A0V0HJ00 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 66  EQSYSSFEKFSSFSLTDPLTMSKSGFSRRHVIKTTSSPSSQALA 110
           E   SS +KFSSFSLT PLTMS+SGF RR VI TTSSPSSQALA
Sbjct: 10  ESPNSSLQKFSSFSLTAPLTMSRSGFIRRQVINTTSSPSSQALA 53

The following BLAST results are available for this feature:
BLAST of CmoCh17G009330 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0V0HJ004.2e-0677.27Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
BLAST of CmoCh17G009330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G009330.1CmoCh17G009330.1mRNA