CmoCh17G009240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G009240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	thylakoid lumenal 19 kDa protein, chloroplastic-like
Location	Cmo_Chr17: 8247222 .. 8248790 (+)
RNA-Seq Expression	CmoCh17G009240
Synteny	CmoCh17G009240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTGCACGGAAATGGGATATCGCTTGTGAAAATCGGGGCATTGTTGTAATAAAAACCAAGTTTGGGGCTACAACTACAAGGAATTAATGTAAATTTTATTTTTTTAAATAGCTTTAAATTATTTAATTGGTTCTCTCTTTGGGCATAGCTGTCTGTTTAGGTAAGAATAGTGACCGTTAGATTTTTGTTAGAAGCTTATGGAATAATAAATATAAAAAAGTTAAATAATAAAAATAAAAACATTTAATATATAAATTCCATAAATTAAAAAACGATTTAGAAAAATAAAGAAAATGGAAAATAATGGATAAGGAGAAAATCCTACGCAGACGAGATAAACCAGAAATCCAAAATCCACGAAAATCGCTCACTATGGCCGCAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCATAATTGCCGCAAATTCCGCCGCCGCAAAAGCCCCAAATTATCCCCGTTCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGGGTAGCGCCATCGCCATAGCCGCGATTGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCAACAAGAAAGACTCTGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGATTAGTATCAAAAGTCGAAAAAGGTATTTCAAAATCGCCATGGAAATTCCTAAATTAAAGAACTCGAATAGTTCAATTCATTTCGAAAATCAATTTTAGCTTCTTGATTCCGCAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCCGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATGGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGAGATCAGGATATGCTTCGGCATGTTCATGAATCCTTCAAGACGATCGGATCGTATTGAGCTTTGGTCGCGTCGTCGGAGATTTGGTCGGAGGGAGGTTTGCGTTGTCGCTGTGTACGAATTGGTTGTTACATGCTTATTCTTGAATGACGGAAATCTGTAGCTGTGTACGAATTAGCCCGATCATTTAAGTTCATGGTTGTATAAGTAATGAACATGGTCTCTGTTACGACAAATCATTTTGAAAAAATAAAAAATAAAGTCCTGAAAGATTAAATTCAAACTAAACAGTATCATTACGAGCTATAAGGATGAACATGTTTATCATACAGCTCCACCGATCACGCTCGATCATCACTCAACTCGTCGTCGACCCCCTAGTGCATCAGCGATAGTAAAAACAGCTCTCTGTCCCG

mRNA sequence

ATGCCCCTGCACGGAAATGGGATATCGCTTGTGAAAATCGGGGCATTGTTAAATCCAAAATCCACGAAAATCGCTCACTATGGCCGCAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCATAATTGCCGCAAATTCCGCCGCCGCAAAAGCCCCAAATTATCCCCGTTCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGGCGCCATCGCCATAGCCGCGATTGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCAACAAGAAAGACTCTGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGATTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCCGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATGGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGAGATCAGGATATGCTTCGGCATGTTCATGAATCCTTCAAGACGATCGGATCGTATTGAGCTTTGGTCGCGTCGTCGGAGATTTGGTCGGAGGGAGGTTTGCGTTGTCGCTGTGTACGAATTGGTTGTTACATGCTTATTCTTGAATGACGGAAATCTGTAGCTGTGTACGAATTAGCCCGATCATTTAAGTTCATGGTTGTATAAGTAATGAACATGGTCTCTGTTACGACAAATCATTTTGAAAAAATAAAAAATAAAGTCCTGAAAGATTAAATTCAAACTAAACAGTATCATTACGAGCTATAAGGATGAACATGTTTATCATACAGCTCCACCGATCACGCTCGATCATCACTCAACTCGTCGTCGACCCCCTAGTGCATCAGCGATAGTAAAAACAGCTCTCTGTCCCG

Coding sequence (CDS)

ATGCCCCTGCACGGAAATGGGATATCGCTTGTGAAAATCGGGGCATTGTTAAATCCAAAATCCACGAAAATCGCTCACTATGGCCGCAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCATAATTGCCGCAAATTCCGCCGCCGCAAAAGCCCCAAATTATCCCCGTTCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGGCGCCATCGCCATAGCCGCGATTGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCAACAAGAAAGACTCTGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGATTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCCGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATGGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGAGATCAGGATATGCTTCGGCATGTTCATGAATCCTTCAAGACGATCGGATCGTATTGA

Protein sequence

MPLHGNGISLVKIGALLNPKSTKIAHYGRSNLAIGVLLRRRCIHRNNRPIIAANSAAAKAPNYPRSSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

Homology

[Close]

BLAST of CmoCh17G009240 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 285.0 bits (728), Expect = 8.7e-76
Identity = 139/218 (63.76%), Postives = 170/218 (77.98%), Query Frame = 0


Query: 56  AAAKAPNYPRSSIQTLTLLIDRRGAIAIAAIVSTSP--PSLADAGPAFNVYYGTAASAAN 115
           +A + P  P++    L   +    A+A  ++++  P  P+  +    + +YYGTAASAAN
Sbjct: 13  SATRTPIVPKAIASRLGTSL--AAALAATSVLTMVPVLPAAGEGNQTYKIYYGTAASAAN 72

Query: 116 YGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAG 175
           YGG GGN+++K SAEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG
Sbjct: 73  YGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAG 132

Query: 176 IRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISV 235
            RQL P+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY YEIDG G HSLI+V
Sbjct: 133 FRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITV 192

Query: 236 TCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGS 272
           TC+KN+LYAHFVNAP PEWNRD D L H+ +SFKT+ S
Sbjct: 193 TCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of CmoCh17G009240 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.3e-103
Identity = 200/229 (87.34%), Postives = 204/229 (89.08%), Query Frame = 0


Query: 52  AANSAAAKAPNYPR--------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNV 111
           AA S    AP  P+         S  +L+ L     AIAIAAIVSTSPPSLADAGPAFNV
Sbjct: 37  AAASTGTTAPKLPQKPQIIPILQSKPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNV 96

Query: 112 YYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRS 171
           YYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRS
Sbjct: 97  YYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRS 156

Query: 172 EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID 231
           EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID
Sbjct: 157 EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID 216

Query: 232 GAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY 273
            AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
Sbjct: 217 SAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY 265

[Close]

BLAST of CmoCh17G009240 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.7e-98
Identity = 180/193 (93.26%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 80  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKE 139
           AIA+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKE
Sbjct: 58  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 117

Query: 140 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 199
           RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA
Sbjct: 118 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 177

Query: 200 SAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 259
           SAESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML
Sbjct: 178 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 237

Query: 260 RHVHESFKTIGSY 273
           RHVHESFKT+GSY
Sbjct: 238 RHVHESFKTVGSY 250

[Close]

BLAST of CmoCh17G009240 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.7e-98
Identity = 180/193 (93.26%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 80  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKE 139
           AIA+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKE
Sbjct: 58  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 117

Query: 140 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 199
           RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA
Sbjct: 118 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 177

Query: 200 SAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 259
           SAESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML
Sbjct: 178 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 237

Query: 260 RHVHESFKTIGSY 273
           RHVHESFKT+GSY
Sbjct: 238 RHVHESFKTVGSY 250

[Close]

BLAST of CmoCh17G009240 vs. ExPASy TrEMBL
Match: A0A0A0K624 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 8.4e-98
Identity = 179/193 (92.75%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 80  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKE 139
           AIA+AAI+ST+ PSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEY+YDVP+GWKE
Sbjct: 53  AIAVAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKE 112

Query: 140 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 199
           RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA
Sbjct: 113 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 172

Query: 200 SAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 259
           SAESF AEEKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML
Sbjct: 173 SAESFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 232

Query: 260 RHVHESFKTIGSY 273
           RHVH+SFKT+GSY
Sbjct: 233 RHVHDSFKTVGSY 245

[Close]

BLAST of CmoCh17G009240 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.2e-96
Identity = 178/193 (92.23%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 80  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKE 139
           AIA+AAI+ST+PPSLADAG AFNVYYGTAASAANYGG GGNA+KKDSAEY+YDVP+GWKE
Sbjct: 57  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 116

Query: 140 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 199
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 117 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 176

Query: 200 SAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 259
           SAE  SAEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 177 SAEGISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 236

Query: 260 RHVHESFKTIGSY 273
           RHVHESFKT+GSY
Sbjct: 237 RHVHESFKTVGSY 249

[Close]

BLAST of CmoCh17G009240 vs. NCBI nr
Match: XP_023547955.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.7 bits (997), Expect = 4.3e-104
Identity = 202/234 (86.32%), Postives = 205/234 (87.61%), Query Frame = 0


Query: 52  AANSAAAKAPNYPR-------------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAG 111
           AA S    AP  P+              S  +L+ L     AIAIAAIVSTSPPSLADAG
Sbjct: 14  AAASTGTTAPKLPQIPPPQKPQIIPILQSKPSLSSLTAAGSAIAIAAIVSTSPPSLADAG 73

Query: 112 PAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYN 171
           PAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYN
Sbjct: 74  PAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYN 133

Query: 172 PKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYY 231
           PKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYY
Sbjct: 134 PKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYY 193

Query: 232 EYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY 273
           EYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
Sbjct: 194 EYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY 247

[Close]

BLAST of CmoCh17G009240 vs. NCBI nr
Match: KAG6575683.1 (Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014238.1 Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 386.7 bits (992), Expect = 1.6e-103
Identity = 201/234 (85.90%), Postives = 205/234 (87.61%), Query Frame = 0


Query: 52  AANSAAAKAPNYPR-------------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAG 111
           AA S  A AP  P+              S  +L+ L     AIAIA IVSTSPPSLADAG
Sbjct: 14  AAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIATIVSTSPPSLADAG 73

Query: 112 PAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYN 171
           PAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYN
Sbjct: 74  PAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYN 133

Query: 172 PKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYY 231
           PKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYY
Sbjct: 134 PKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYY 193

Query: 232 EYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY 273
           EYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHESFKTIGSY
Sbjct: 194 EYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHESFKTIGSY 247

[Close]

BLAST of CmoCh17G009240 vs. NCBI nr
Match: XP_022991922.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 386.0 bits (990), Expect = 2.8e-103
Identity = 200/229 (87.34%), Postives = 204/229 (89.08%), Query Frame = 0


Query: 52  AANSAAAKAPNYPR--------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNV 111
           AA S    AP  P+         S  +L+ L     AIAIAAIVSTSPPSLADAGPAFNV
Sbjct: 37  AAASTGTTAPKLPQKPQIIPILQSKPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNV 96

Query: 112 YYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRS 171
           YYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRS
Sbjct: 97  YYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRS 156

Query: 172 EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID 231
           EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID
Sbjct: 157 EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID 216

Query: 232 GAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY 273
            AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
Sbjct: 217 SAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY 265

[Close]

BLAST of CmoCh17G009240 vs. NCBI nr
Match: XP_008461279.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA0058638.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa] >TYK10445.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 3.5e-98
Identity = 180/193 (93.26%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 80  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKE 139
           AIA+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKE
Sbjct: 58  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 117

Query: 140 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 199
           RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA
Sbjct: 118 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 177

Query: 200 SAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 259
           SAESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML
Sbjct: 178 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 237

Query: 260 RHVHESFKTIGSY 273
           RHVHESFKT+GSY
Sbjct: 238 RHVHESFKTVGSY 250

[Close]

BLAST of CmoCh17G009240 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 367.5 bits (942), Expect = 1.0e-97
Identity = 180/192 (93.75%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 81  IAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKER 140
           IA+AAI+ST+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEY+YDVP+GWKER
Sbjct: 59  IAVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKER 118

Query: 141 LVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIAS 200
           LVSKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIAS
Sbjct: 119 LVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIAS 178

Query: 201 AESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLR 260
           AESF AEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLR
Sbjct: 179 AESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLR 238

Query: 261 HVHESFKTIGSY 273
           HVHESFKTIGSY
Sbjct: 239 HVHESFKTIGSY 250

[Close]

BLAST of CmoCh17G009240 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 229.9 bits (585), Expect = 2.4e-60
Identity = 107/140 (76.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 132 DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSD 191
           +V +GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 192 VNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 251
           V LQD IA A+   +EE+KDE GQ+YY YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 252 WNRDQDMLRHVHESFKTIGS 272
           WNRD D L H+ +SFKT+ S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of CmoCh17G009240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	8.7e-76	63.76	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh17G009240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN94	1.3e-103	87.34	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]
A0A5D3CG07	1.7e-98	93.26	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	1.7e-98	93.26	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0K624	8.4e-98	92.75	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 S...	[more]
A0A6J1H7M1	1.2e-96	92.23	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]

BLAST of CmoCh17G009240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547955.1	4.3e-104	86.32	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
KAG6575683.1	1.6e-103	85.90	Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma...	[more]
XP_022991922.1	2.8e-103	87.34	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_008461279.1	3.5e-98	93.26	PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA00...	[more]
XP_038896859.1	1.0e-97	93.75	thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]	[more]

BLAST of CmoCh17G009240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	2.4e-60	76.43	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 127..267 e-value: 6.0E-12 score: 46.0
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 108..268 e-value: 6.2E-18 score: 67.3
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 64..269
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 64..269
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 126..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G009240.1	CmoCh17G009240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding